Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|06243
Gene name
Location	scaffold_07:1680462..1681601
Strand	-
Gene length (bp)	1139
Transcript length (bp)	873
Coding sequence length (bp)	873
Protein length (aa)	291

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF02104	SURF1	SURF1 family	4.3E-54	55	263

GO

GO Term	Description	Terminal node
GO:0016020	membrane	Yes
GO:0005575	cellular_component	No
GO:0110165	cellular anatomical entity	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	46	68	22
2	254	273	19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	49.08	25.29	72.88
Alive	In ants, during behavior modification	38.05	18.44	57.66
Dead	In ants, recently dead	41.34	20.55	62.12

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.268548	no
Alive	Dead	0.722437	no
Dead	Fungus	0.472255	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|06243 MTKMIRRICRPGISVSSSRQQPADDPTFVSILDGPPRIARIKRKHGPGLILLALIPITAFALGTWQVQRLRWKSE LIAKLEDRLIRDPLPLPPHVDPSALDEFDYRRVVASGYFRHDQEMLIGPRIRDGQDGFLVVTPLERVDASTVLVN RGWISKKFARQASRPDSLPTHLATVEGLLRKPWKKNMFTPDNKPESGQFYFPDVEQMAALTDSQPVWVESTTEPE FMTIIDLESRGIPIGRSPEVSLRNNHAQYIVTWYSLCLATSVMFYMLVKKPPPGMARQLHPHRKF*
Coding	>Ophcf2\|06243 ATGACCAAGATGATCCGCCGCATCTGCCGCCCCGGAATCTCCGTATCGTCTTCAAGACAACAGCCAGCCGACGAC CCAACCTTCGTCTCCATCCTCGACGGCCCCCCAAGAATCGCCCGAATCAAGCGCAAACACGGCCCCGGCCTCATC CTCCTCGCCCTCATCCCAATCACCGCCTTCGCCCTCGGAACATGGCAGGTTCAACGCCTTCGCTGGAAATCAGAA CTCATCGCTAAGCTAGAGGATCGGCTCATTCGAGATCCGCTTCCTCTGCCGCCGCATGTCGACCCGTCCGCCCTC GATGAATTCGACTACCGCCGTGTCGTTGCATCGGGATATTTCCGTCATGATCAGGAGATGCTCATTGGGCCTCGG ATTCGTGACGGCCAAGATGGCTTTCTCGTCGTCACGCCTCTTGAGAGGGTAGACGCGTCGACCGTCTTGGTAAAC CGCGGCTGGATCAGCAAGAAGTTTGCCCGTCAGGCTTCCCGGCCCGATTCGCTTCCGACTCATCTCGCCACCGTC GAGGGATTGCTGCGCAAGCCGTGGAAGAAGAACATGTTTACGCCCGATAACAAGCCCGAAAGCGGCCAATTTTAT TTTCCCGACGTTGAGCAAATGGCTGCCCTGACCGACAGCCAGCCTGTTTGGGTCGAATCTACCACGGAGCCCGAG TTCATGACCATAATAGACCTCGAGTCCCGCGGCATCCCCATCGGGCGGTCTCCCGAGGTCAGCTTGAGAAACAAC CACGCGCAGTACATCGTCACCTGGTATTCCTTGTGCTTGGCCACATCCGTCATGTTCTACATGTTGGTCAAGAAA CCTCCACCAGGCATGGCCCGTCAACTGCACCCGCACAGAAAATTCTAG
Transcript	>Ophcf2\|06243 ATGACCAAGATGATCCGCCGCATCTGCCGCCCCGGAATCTCCGTATCGTCTTCAAGACAACAGCCAGCCGACGAC CCAACCTTCGTCTCCATCCTCGACGGCCCCCCAAGAATCGCCCGAATCAAGCGCAAACACGGCCCCGGCCTCATC CTCCTCGCCCTCATCCCAATCACCGCCTTCGCCCTCGGAACATGGCAGGTTCAACGCCTTCGCTGGAAATCAGAA CTCATCGCTAAGCTAGAGGATCGGCTCATTCGAGATCCGCTTCCTCTGCCGCCGCATGTCGACCCGTCCGCCCTC GATGAATTCGACTACCGCCGTGTCGTTGCATCGGGATATTTCCGTCATGATCAGGAGATGCTCATTGGGCCTCGG ATTCGTGACGGCCAAGATGGCTTTCTCGTCGTCACGCCTCTTGAGAGGGTAGACGCGTCGACCGTCTTGGTAAAC CGCGGCTGGATCAGCAAGAAGTTTGCCCGTCAGGCTTCCCGGCCCGATTCGCTTCCGACTCATCTCGCCACCGTC GAGGGATTGCTGCGCAAGCCGTGGAAGAAGAACATGTTTACGCCCGATAACAAGCCCGAAAGCGGCCAATTTTAT TTTCCCGACGTTGAGCAAATGGCTGCCCTGACCGACAGCCAGCCTGTTTGGGTCGAATCTACCACGGAGCCCGAG TTCATGACCATAATAGACCTCGAGTCCCGCGGCATCCCCATCGGGCGGTCTCCCGAGGTCAGCTTGAGAAACAAC CACGCGCAGTACATCGTCACCTGGTATTCCTTGTGCTTGGCCACATCCGTCATGTTCTACATGTTGGTCAAGAAA CCTCCACCAGGCATGGCCCGTCAACTGCACCCGCACAGAAAATTCTAG
Gene	>Ophcf2\|06243 ATGACCAAGATGATCCGCCGCATCTGCCGCCCCGGAATCTCCGTATCGTCTTCAGTCCGCCCCTCAGTATCTCTC CAATCCCACCCAATTCCATCACCAGCCCGTTCGCCCTCCCACCTCTTCACAACCACCTCTCTCCGCCAGAGACAA CAGCCAGCCGACGACCCAACCTTCGTCTCCATCCTCGACGGCCCCCCAAGAATCGCCCGAATCAAGCGCAAACAC GGCCCCGGCCTCATCCTCCTCGGTACAGCCCAAAAAACGAAGAAAGCCAAGACGTTTCCTGATCCCCGCCTACAG CCCTCATCCCAATCACCGCCTTCGCCCTCGGAACATGGCAGGTTCAACGCCTTCGCTGGAAATCAGAACTCATCG CTAAGCTAGAGGATCGGCTCATTCGAGATCCGCTTCCTCTGCCGCCGCATGTCGACCCGTCCGCCCTCGATGAAT TCGACTACCGCCGTGTCGTTGCATCGGGATATTTCCGTCATGATCAGGAGATGCTCATTGGGCCTCGGATTCGTG ACGGCCAAGATGGCTTTCTCGTCGTCACGCCTCTTGAGAGGGTAGACGCGTCGACCGTCTTGGTAAACCGCGGCT GGATCAGCAAGAAGTTTGCCCGTCAGGCTTCCCGGCCCGATTCGCTTCCGACTCATCTCGCCACCGTCGAGGGAT TGCTGCGCAAGCCGTGGAAGAAGAACATGTTTACGCCCGATAACAAGCCCGAAAGCGGCCAATTTTATTTTCCCG ACGTTGAGCAAATGGCTGCCCTGACCGACAGCCAGCCTGTTTGGGTCGAATCTACCACGGGTATATCCTCCTAGC TGCCAGCCTCACCTCCTCCCTTGATCCTTCGTCCGGCGCTAAATGACGACAGAGCCCGAGTTCATGACCATAATA GACCTCGAGTCCCGCGGCATCCCCATCGGGCGGTCTCCCGAGGTCAGCTTGAGAAACAACCACGCGCAGTACATC GTCACCTGGTACGTCGCCCTTGCCCCCCCCCTTTGCTGGGAACCGATATTCTGACAAGACCCAGGTATTCCTTGT GCTTGGCCACATCCGTCATGTTCTACATGTTGGTCAAGAAACCTCCACCAGGCATGGCCCGTCAACTGCACCCGC ACAGAAAATTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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