© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|06209 |
| Gene name | |
| Location | scaffold_07:1598152..1599648 |
| Strand | + |
| Gene length (bp) | 1496 |
| Transcript length (bp) | 1332 |
| Coding sequence length (bp) | 1332 |
| Protein length (aa) | 444 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 5.0E-36 | 83 | 396 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 9 | 31 | 22 |
| 2 | 79 | 101 | 22 |
| 3 | 113 | 132 | 19 |
| 4 | 170 | 192 | 22 |
| 5 | 199 | 221 | 22 |
| 6 | 260 | 282 | 22 |
| 7 | 295 | 314 | 19 |
| 8 | 320 | 337 | 17 |
| 9 | 344 | 366 | 22 |
| 10 | 381 | 403 | 22 |
| 11 | 410 | 429 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 66.38 | 37.87 | 94.89 |
| Alive | In ants, during behavior modification | 365.07 | 158.52 | 571.62 |
| Dead | In ants, recently dead | 188.06 | 98.50 | 277.63 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.000657 | yes |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06209 MAVVDRKKVLRVIIVSLLLDLISFTFILPLFPKLLEFYRDREAPALVQHGPQTLLQRVIAGLNSYKMAFSRPIDS RHDIVLLGGAMGSLFSLLQAIASPVIGRLSDRYGRRAALLASMCGNILSVLLWLAAVDFRTFIASRVVGGLSEGN IQLATAIASDISDDASRGSTMAIIGSCFCVAFTFGPALGAWLSTMAVMAANPFAMAAGFSLLLILVETVYLYFCL PETLPALTQPGRRGREAVSEAKRRTTSVERTNSPWLLYAVNFFFLLFFSGMESSLSFMTYELFAFSPGKNGRLLG FIGLVASVLQGGVTRRMPPLLSIRVGVVACLASFVLLGRINTVGGLYVAATCLATTSATVVTGLNALSSFDASED ERGSKLGILRSWGQLGRGLGPVLFTSIYWWAGREYAYNVGATGILMVAAAAFMGLKTPKAASVSVKRA* |
| Coding | >Ophcf2|06209 ATGGCAGTCGTCGATAGGAAAAAGGTCCTTCGGGTCATCATCGTCTCCCTCCTCCTTGATTTGATCTCCTTTACC TTCATCCTACCGCTCTTCCCCAAGCTTCTCGAGTTCTATCGTGATCGCGAGGCCCCGGCCCTCGTCCAACATGGC CCGCAGACGTTGCTTCAGCGCGTCATCGCCGGTCTCAACAGCTACAAGATGGCCTTTTCGCGGCCCATCGATTCG CGCCATGACATCGTCCTTCTGGGCGGAGCCATGGGCTCGCTCTTCTCCCTGCTGCAAGCCATAGCCTCGCCCGTC ATCGGCCGCTTGTCCGACCGATATGGCCGCCGCGCCGCCCTGCTCGCTTCCATGTGTGGCAACATCCTCTCCGTT CTGTTGTGGCTTGCCGCCGTCGACTTCCGCACCTTTATCGCCAGCCGCGTCGTCGGCGGACTATCCGAGGGCAAT ATCCAGCTTGCGACCGCCATCGCCAGCGACATTTCGGATGACGCCTCGCGCGGTTCCACAATGGCCATCATCGGC TCTTGTTTCTGCGTCGCTTTTACCTTTGGTCCGGCTCTCGGCGCTTGGCTTAGCACCATGGCCGTCATGGCTGCG AACCCGTTCGCCATGGCCGCCGGCTTCAGCTTGTTGCTGATTCTTGTCGAGACCGTCTATCTCTACTTTTGCCTT CCCGAGACGCTTCCCGCTTTGACGCAGCCCGGGAGGCGGGGCCGTGAGGCCGTGTCTGAGGCGAAACGCCGGACG ACGTCGGTGGAAAGGACCAACTCACCTTGGTTACTCTACGCTGTCAATTTTTTTTTCCTCCTCTTCTTCTCTGGA ATGGAGAGTTCGCTCTCGTTTATGACCTACGAGCTTTTCGCCTTTTCGCCGGGCAAGAACGGCAGGTTGCTGGGT TTCATAGGTCTCGTGGCGTCGGTTCTTCAGGGCGGCGTCACGCGCAGGATGCCGCCTCTTCTGTCTATCCGTGTC GGTGTCGTGGCCTGTCTTGCGTCCTTTGTCCTACTCGGGAGGATCAACACCGTGGGCGGTCTTTACGTTGCCGCC ACCTGTCTTGCCACGACATCGGCTACCGTCGTCACTGGTCTCAATGCGCTGAGTAGTTTTGATGCCAGCGAGGAC GAGCGAGGGAGCAAGCTGGGCATCCTGCGCAGCTGGGGCCAGCTGGGACGTGGCCTCGGTCCCGTCTTGTTCACC AGCATCTACTGGTGGGCGGGACGCGAGTATGCGTACAACGTGGGCGCGACGGGCATTCTCATGGTGGCAGCGGCT GCTTTTATGGGACTCAAGACGCCCAAGGCGGCGAGCGTGAGCGTCAAGCGAGCATGA |
| Transcript | >Ophcf2|06209 ATGGCAGTCGTCGATAGGAAAAAGGTCCTTCGGGTCATCATCGTCTCCCTCCTCCTTGATTTGATCTCCTTTACC TTCATCCTACCGCTCTTCCCCAAGCTTCTCGAGTTCTATCGTGATCGCGAGGCCCCGGCCCTCGTCCAACATGGC CCGCAGACGTTGCTTCAGCGCGTCATCGCCGGTCTCAACAGCTACAAGATGGCCTTTTCGCGGCCCATCGATTCG CGCCATGACATCGTCCTTCTGGGCGGAGCCATGGGCTCGCTCTTCTCCCTGCTGCAAGCCATAGCCTCGCCCGTC ATCGGCCGCTTGTCCGACCGATATGGCCGCCGCGCCGCCCTGCTCGCTTCCATGTGTGGCAACATCCTCTCCGTT CTGTTGTGGCTTGCCGCCGTCGACTTCCGCACCTTTATCGCCAGCCGCGTCGTCGGCGGACTATCCGAGGGCAAT ATCCAGCTTGCGACCGCCATCGCCAGCGACATTTCGGATGACGCCTCGCGCGGTTCCACAATGGCCATCATCGGC TCTTGTTTCTGCGTCGCTTTTACCTTTGGTCCGGCTCTCGGCGCTTGGCTTAGCACCATGGCCGTCATGGCTGCG AACCCGTTCGCCATGGCCGCCGGCTTCAGCTTGTTGCTGATTCTTGTCGAGACCGTCTATCTCTACTTTTGCCTT CCCGAGACGCTTCCCGCTTTGACGCAGCCCGGGAGGCGGGGCCGTGAGGCCGTGTCTGAGGCGAAACGCCGGACG ACGTCGGTGGAAAGGACCAACTCACCTTGGTTACTCTACGCTGTCAATTTTTTTTTCCTCCTCTTCTTCTCTGGA ATGGAGAGTTCGCTCTCGTTTATGACCTACGAGCTTTTCGCCTTTTCGCCGGGCAAGAACGGCAGGTTGCTGGGT TTCATAGGTCTCGTGGCGTCGGTTCTTCAGGGCGGCGTCACGCGCAGGATGCCGCCTCTTCTGTCTATCCGTGTC GGTGTCGTGGCCTGTCTTGCGTCCTTTGTCCTACTCGGGAGGATCAACACCGTGGGCGGTCTTTACGTTGCCGCC ACCTGTCTTGCCACGACATCGGCTACCGTCGTCACTGGTCTCAATGCGCTGAGTAGTTTTGATGCCAGCGAGGAC GAGCGAGGGAGCAAGCTGGGCATCCTGCGCAGCTGGGGCCAGCTGGGACGTGGCCTCGGTCCCGTCTTGTTCACC AGCATCTACTGGTGGGCGGGACGCGAGTATGCGTACAACGTGGGCGCGACGGGCATTCTCATGGTGGCAGCGGCT GCTTTTATGGGACTCAAGACGCCCAAGGCGGCGAGCGTGAGCGTCAAGCGAGCATGA |
| Gene | >Ophcf2|06209 ATGGCAGTCGTCGATAGGAAAAAGGTCCTTCGGGTCATCATCGTCTCCCTCCTCCTTGATTTGGTCGGTGGCTCC CCGGGCGGATACGCGCCAAGCATCGAGACTCCGCTGACTCTCCACCGAAAAATGAAAAATAAAAAATAAAAACAC GGGCAGATCTCCTTTACCTTCATCCTACCGCTCTTCCCCAAGCTTCTCGAGTTCTATCGTGATCGCGAGGCCCCG GCCCTCGTCCAACATGGCCCGCAGACGTTGCTTCAGCGCGTCATCGCCGGTCTCAACAGCTACAAGATGGCCTTT TCGCGGCCCATCGATTCGCGCCATGACATCGTCCTTCTGGGCGGAGCCATGGGCTCGCTCTTCTCGTGCGCCACT CTCATCATTCCATTCCCTTCCTCCGCCGTCTCGTTGACAATCGCCACCCCTTTCCCCACAGCCTGCTGCAAGCCA TAGCCTCGCCCGTCATCGGCCGCTTGTCCGACCGATATGGCCGCCGCGCCGCCCTGCTCGCTTCCATGTGTGGCA ACATCCTCTCCGTTCTGTTGTGGCTTGCCGCCGTCGACTTCCGCACCTTTATCGCCAGCCGCGTCGTCGGCGGAC TATCCGAGGGCAATATCCAGCTTGCGACCGCCATCGCCAGCGACATTTCGGATGACGCCTCGCGCGGTTCCACAA TGGCCATCATCGGCTCTTGTTTCTGCGTCGCTTTTACCTTTGGTCCGGCTCTCGGCGCTTGGCTTAGCACCATGG CCGTCATGGCTGCGAACCCGTTCGCCATGGCCGCCGGCTTCAGCTTGTTGCTGATTCTTGTCGAGACCGTCTATC TCTACTTTTGCCTTCCCGAGACGCTTCCCGCTTTGACGCAGCCCGGGAGGCGGGGCCGTGAGGCCGTGTCTGAGG CGAAACGCCGGACGACGTCGGTGGAAAGGACCAACTCACCTTGGTTACTCTACGCTGTCAATTTTTTTTTCCTCC TCTTCTTCTCTGGAATGGAGAGTTCGCTCTCGTTTATGACCTACGAGCTTTTCGCCTTTTCGCCGGGCAAGAACG GCAGGTTGCTGGGTTTCATAGGTCTCGTGGCGTCGGTTCTTCAGGGCGGCGTCACGCGCAGGATGCCGCCTCTTC TGTCTATCCGTGTCGGTGTCGTGGCCTGTCTTGCGTCCTTTGTCCTACTCGGGAGGATCAACACCGTGGGCGGTC TTTACGTTGCCGCCACCTGTCTTGCCACGACATCGGCTACCGTCGTCACTGGTCTCAATGCGCTGAGTAGTTTTG ATGCCAGCGAGGACGAGCGAGGGAGCAAGCTGGGCATCCTGCGCAGCTGGGGCCAGCTGGGACGTGGCCTCGGTC CCGTCTTGTTCACCAGCATCTACTGGTGGGCGGGACGCGAGTATGCGTACAACGTGGGCGCGACGGGCATTCTCA TGGTGGCAGCGGCTGCTTTTATGGGACTCAAGACGCCCAAGGCGGCGAGCGTGAGCGTCAAGCGAGCATGA |