© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06201 |
| Gene name | |
| Location | scaffold_07:1581320..1582881 |
| Strand | + |
| Gene length (bp) | 1561 |
| Transcript length (bp) | 1482 |
| Coding sequence length (bp) | 1482 |
| Protein length (aa) | 494 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 9.8E-36 | 111 | 443 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 2.4E-05 | 102 | 208 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 57 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 104 | 126 | 22 |
| 2 | 141 | 163 | 22 |
| 3 | 170 | 188 | 18 |
| 4 | 198 | 220 | 22 |
| 5 | 227 | 249 | 22 |
| 6 | 259 | 281 | 22 |
| 7 | 302 | 324 | 22 |
| 8 | 337 | 359 | 22 |
| 9 | 366 | 388 | 22 |
| 10 | 394 | 416 | 22 |
| 11 | 429 | 451 | 22 |
| 12 | 461 | 483 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06201 MDVHQVNSRALHDDDDDSAATATMTTTTTTAVVAAAAAVARNDEDEDEDEDEDEDEDEDDDDDHRVRRQHQPDNI DGDALEKRASSASYEETYPEGGLRAWLVVLGSWFAMVSSMGLMNTVGIFQAYTLRHQLRHHSEGTVGWIFSVYTF LSFFCGVYIGPVFDKYGPRWLVVAGCASTFVGVLLLSFCQELWQFVLSFGVLAGFGTSLLFTPCIAAVGHWFRRR RGFATGMASTAGGIGGIVFPLMLTSLFESVGYGWATRALALACLACGLVGVALVRSRLPPAQDATAHPDLRILRQ VPFTLTTVAIFLLEFSLFIPLTFISTYAMHEGFDQSFAFHLLPIMNAGSVVGRALPGYYADVVGPFNVCLASVLL SLVACLCVWLPLGHTAAGIIVFSLIFGFASGTSIAIAPVCIGRMCKTRNYGRYYATTYTVVSFACLLGVPIGGSI VRASGGSYTSLIVLTGAVYVGSALCMLMAKVWHLGWKRWLAVY* |
| Coding | >Ophcf2|06201 ATGGATGTGCATCAGGTCAATTCGCGGGCCTTGCACGATGACGATGATGATAGTGCGGCGACGGCGACGATGACG ACGACGACGACTACTGCTGTTGTTGCTGCTGCTGCTGCTGTGGCGAGGAATGACGAGGATGAGGATGAGGATGAG GATGAGGATGAGGATGAGGATGAGGATGATGACGATGATCATCGTGTTCGTCGTCAACATCAACCGGACAATATT GATGGCGACGCGCTCGAGAAGAGGGCTTCATCCGCATCTTACGAAGAGACGTATCCCGAAGGAGGGCTGCGGGCC TGGCTGGTCGTCTTGGGAAGTTGGTTCGCCATGGTTTCGTCGATGGGGTTGATGAATACGGTTGGCATCTTTCAG GCTTATACGCTGCGTCACCAGCTTCGACATCATAGCGAGGGGACGGTCGGCTGGATCTTTTCCGTCTATACCTTT CTCTCCTTCTTCTGCGGCGTCTACATCGGTCCCGTCTTCGACAAGTACGGTCCTAGATGGCTGGTTGTCGCCGGC TGTGCGAGCACCTTTGTCGGCGTATTGCTACTGAGTTTCTGTCAAGAACTCTGGCAATTCGTCCTCTCCTTCGGC GTCCTCGCCGGTTTCGGCACCTCCCTCCTCTTCACGCCCTGCATAGCAGCCGTGGGCCACTGGTTCCGCCGTCGA CGCGGCTTCGCAACAGGCATGGCCTCGACGGCCGGCGGGATAGGCGGCATCGTCTTCCCCTTGATGCTCACCTCT CTCTTCGAAAGCGTCGGTTACGGATGGGCCACGCGCGCCTTGGCCCTCGCCTGTTTGGCCTGCGGACTCGTCGGC GTTGCGCTCGTGCGCTCTCGTCTCCCGCCCGCTCAGGACGCCACGGCTCATCCCGATCTTCGAATCCTGCGACAG GTTCCCTTTACGCTGACGACCGTCGCCATCTTCCTACTCGAGTTTTCGCTCTTCATCCCCCTGACCTTTATATCG ACGTATGCCATGCACGAGGGTTTCGACCAATCCTTCGCCTTTCATCTTCTCCCCATCATGAACGCCGGCTCCGTC GTGGGCCGCGCTTTACCAGGATACTACGCCGACGTGGTCGGTCCCTTCAACGTCTGTCTCGCCTCGGTCCTCCTC TCGCTGGTAGCCTGTCTCTGCGTCTGGCTACCGCTGGGACACACAGCGGCCGGCATAATCGTCTTCTCCCTCATC TTCGGCTTCGCAAGCGGGACGAGCATCGCCATCGCGCCCGTCTGCATAGGCCGGATGTGCAAGACGCGCAACTAC GGCCGCTACTACGCGACCACCTACACCGTCGTCTCCTTCGCCTGCCTCCTGGGCGTGCCCATCGGGGGATCTATC GTTCGGGCCAGCGGGGGGTCGTATACGAGTTTGATTGTGCTTACGGGGGCTGTCTACGTTGGTTCTGCGCTTTGT ATGCTCATGGCTAAGGTGTGGCATTTGGGATGGAAGCGGTGGTTGGCCGTATATTGA |
| Transcript | >Ophcf2|06201 ATGGATGTGCATCAGGTCAATTCGCGGGCCTTGCACGATGACGATGATGATAGTGCGGCGACGGCGACGATGACG ACGACGACGACTACTGCTGTTGTTGCTGCTGCTGCTGCTGTGGCGAGGAATGACGAGGATGAGGATGAGGATGAG GATGAGGATGAGGATGAGGATGAGGATGATGACGATGATCATCGTGTTCGTCGTCAACATCAACCGGACAATATT GATGGCGACGCGCTCGAGAAGAGGGCTTCATCCGCATCTTACGAAGAGACGTATCCCGAAGGAGGGCTGCGGGCC TGGCTGGTCGTCTTGGGAAGTTGGTTCGCCATGGTTTCGTCGATGGGGTTGATGAATACGGTTGGCATCTTTCAG GCTTATACGCTGCGTCACCAGCTTCGACATCATAGCGAGGGGACGGTCGGCTGGATCTTTTCCGTCTATACCTTT CTCTCCTTCTTCTGCGGCGTCTACATCGGTCCCGTCTTCGACAAGTACGGTCCTAGATGGCTGGTTGTCGCCGGC TGTGCGAGCACCTTTGTCGGCGTATTGCTACTGAGTTTCTGTCAAGAACTCTGGCAATTCGTCCTCTCCTTCGGC GTCCTCGCCGGTTTCGGCACCTCCCTCCTCTTCACGCCCTGCATAGCAGCCGTGGGCCACTGGTTCCGCCGTCGA CGCGGCTTCGCAACAGGCATGGCCTCGACGGCCGGCGGGATAGGCGGCATCGTCTTCCCCTTGATGCTCACCTCT CTCTTCGAAAGCGTCGGTTACGGATGGGCCACGCGCGCCTTGGCCCTCGCCTGTTTGGCCTGCGGACTCGTCGGC GTTGCGCTCGTGCGCTCTCGTCTCCCGCCCGCTCAGGACGCCACGGCTCATCCCGATCTTCGAATCCTGCGACAG GTTCCCTTTACGCTGACGACCGTCGCCATCTTCCTACTCGAGTTTTCGCTCTTCATCCCCCTGACCTTTATATCG ACGTATGCCATGCACGAGGGTTTCGACCAATCCTTCGCCTTTCATCTTCTCCCCATCATGAACGCCGGCTCCGTC GTGGGCCGCGCTTTACCAGGATACTACGCCGACGTGGTCGGTCCCTTCAACGTCTGTCTCGCCTCGGTCCTCCTC TCGCTGGTAGCCTGTCTCTGCGTCTGGCTACCGCTGGGACACACAGCGGCCGGCATAATCGTCTTCTCCCTCATC TTCGGCTTCGCAAGCGGGACGAGCATCGCCATCGCGCCCGTCTGCATAGGCCGGATGTGCAAGACGCGCAACTAC GGCCGCTACTACGCGACCACCTACACCGTCGTCTCCTTCGCCTGCCTCCTGGGCGTGCCCATCGGGGGATCTATC GTTCGGGCCAGCGGGGGGTCGTATACGAGTTTGATTGTGCTTACGGGGGCTGTCTACGTTGGTTCTGCGCTTTGT ATGCTCATGGCTAAGGTGTGGCATTTGGGATGGAAGCGGTGGTTGGCCGTATATTGA |
| Gene | >Ophcf2|06201 ATGGATGTGCATCAGGTCAATTCGCGGGCCTTGCACGATGACGATGATGATAGTGCGGCGACGGCGACGATGACG ACGACGACGACTACTGCTGTTGTTGCTGCTGCTGCTGCTGTGGCGAGGAATGACGAGGATGAGGATGAGGATGAG GATGAGGATGAGGATGAGGATGAGGATGATGACGATGATCATCGTGTTCGTCGTCAACATCAACCGGACAATATT GATGGCGACGCGCTCGAGAAGAGGGCTTCATCCGCATCTTACGAAGAGACGTATCCCGAAGGAGGGCTGCGGGCC TGGCTGGTCGTCTTGGGAAGTTGGTTCGCCATGGTTTCGTCGATGGGGTTGATGAATACGGTTGGCATCTTTCAG GCTTATACGCTGCGTCACCAGCTTCGACATCATAGCGAGGGGACGGTCGGCTGGATCTTTTCCGTCTATACCTTT CTCTCCTTCTTCTGCGGCGTCTACATCGGTCCCGTCTTCGACAAGTACGGTCCTAGATGGCTGGTTGTCGCCGGC TGTGCGAGCACCTTTGTCGGCGTATTGCTACTGAGTTTCTGTCAAGGTGAGTCGACTACCTACCTAACCTCTCCC TTTTATAAACCCCCTTCCTTCATCCCATCCAACTAACAATCCCGACCAAGAACTCTGGCAATTCGTCCTCTCCTT CGGCGTCCTCGCCGGTTTCGGCACCTCCCTCCTCTTCACGCCCTGCATAGCAGCCGTGGGCCACTGGTTCCGCCG TCGACGCGGCTTCGCAACAGGCATGGCCTCGACGGCCGGCGGGATAGGCGGCATCGTCTTCCCCTTGATGCTCAC CTCTCTCTTCGAAAGCGTCGGTTACGGATGGGCCACGCGCGCCTTGGCCCTCGCCTGTTTGGCCTGCGGACTCGT CGGCGTTGCGCTCGTGCGCTCTCGTCTCCCGCCCGCTCAGGACGCCACGGCTCATCCCGATCTTCGAATCCTGCG ACAGGTTCCCTTTACGCTGACGACCGTCGCCATCTTCCTACTCGAGTTTTCGCTCTTCATCCCCCTGACCTTTAT ATCGACGTATGCCATGCACGAGGGTTTCGACCAATCCTTCGCCTTTCATCTTCTCCCCATCATGAACGCCGGCTC CGTCGTGGGCCGCGCTTTACCAGGATACTACGCCGACGTGGTCGGTCCCTTCAACGTCTGTCTCGCCTCGGTCCT CCTCTCGCTGGTAGCCTGTCTCTGCGTCTGGCTACCGCTGGGACACACAGCGGCCGGCATAATCGTCTTCTCCCT CATCTTCGGCTTCGCAAGCGGGACGAGCATCGCCATCGCGCCCGTCTGCATAGGCCGGATGTGCAAGACGCGCAA CTACGGCCGCTACTACGCGACCACCTACACCGTCGTCTCCTTCGCCTGCCTCCTGGGCGTGCCCATCGGGGGATC TATCGTTCGGGCCAGCGGGGGGTCGTATACGAGTTTGATTGTGCTTACGGGGGCTGTCTACGTTGGTTCTGCGCT TTGTATGCTCATGGCTAAGGTGTGGCATTTGGGATGGAAGCGGTGGTTGGCCGTATATTGA |