© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06167 |
| Gene name | |
| Location | scaffold_07:1445530..1447209 |
| Strand | + |
| Gene length (bp) | 1679 |
| Transcript length (bp) | 1494 |
| Coding sequence length (bp) | 1494 |
| Protein length (aa) | 498 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01544 | CorA | CorA-like Mg2+ transporter protein | 2.2E-10 | 212 | 434 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0006812 | cation transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0008150 | biological_process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.1077 | 0.0838 | 0.0369 | 0.1254 | 0.8724 | 0.1229 | 0.1292 | 0.1536 | 0.1872 | 0.0417 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 383 | 405 | 22 |
| 2 | 415 | 437 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3419 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06167 MQPAPRPAVPRLSRFLQPRWTRGQVWRGPGSSLRWDSRPFDGSLLCCCRYHDCGSAAAHDKAAATTTTTGSWKDK LRSYGNGGGGGGAGGSRACAGPPRDEFAPGGSSMFNSRRVMTAKAALEPMLRCTEVDENGKAILTDEEFKKTELI AKFGLLPRDLRKIDSSNLPHILVRPSAILLNLLHLKVLIKHDRVFLFDVHGSKESWPQSAFMHDLKNKLEQQPKP SQGPNGLPYEFRALEATLMSVTSEMEAEFESVREPVMHILSELEDDIDRDKLRVLLILSKRISTFEQKSKLVRDA IEELLEADDDLSAMYLTEKAGGTRQRRGNDDHTEVEMLLESYHKLTDEIVQEAGNLVSGIRNTEEIVRAILDANR NALMLLDLKFSVGTLSLAMGTFVAGLYGMNLENFIEESQLGFAIVAGASAAMSLLVCWYGLAKLRRTRRIKMMMG GHESSRVPRGLTFRDDGALGVLDSRNREFLRRAQMQRAMMVKKPWWR* |
| Coding | >Ophcf2|06167 ATGCAACCGGCGCCTAGACCAGCAGTCCCTCGCCTCTCCCGATTCCTCCAGCCGCGGTGGACGCGAGGACAGGTC TGGCGCGGGCCTGGCAGCTCTCTGCGCTGGGATTCGCGCCCGTTTGATGGGTCGCTTCTGTGCTGCTGCCGCTAT CACGACTGTGGCTCCGCTGCGGCGCATGACAAGGCGGCGGCGACGACGACCACGACGGGCAGCTGGAAGGATAAG CTGCGGAGCTATGGCAATGGTGGTGGCGGTGGTGGTGCAGGCGGTTCCAGGGCTTGCGCTGGGCCGCCGCGGGAT GAGTTTGCGCCGGGGGGGTCGTCTATGTTCAACAGTCGGAGGGTGATGACGGCCAAGGCGGCGTTGGAGCCTATG CTTCGATGTACAGAGGTGGATGAGAATGGCAAGGCGATCCTGACGGATGAGGAGTTTAAGAAGACGGAGTTGATT GCAAAGTTTGGCCTTTTACCTCGCGATCTGCGCAAGATTGACTCGTCCAATCTGCCTCACATACTGGTCCGGCCA TCGGCTATTCTTCTCAACCTGCTGCACCTCAAGGTGCTGATCAAGCACGACCGCGTCTTCCTCTTCGACGTACAC GGGTCCAAAGAGTCGTGGCCGCAGTCGGCCTTTATGCACGACCTCAAGAACAAGCTGGAGCAGCAGCCGAAGCCG TCGCAGGGCCCCAACGGATTACCGTACGAGTTCCGGGCTCTCGAGGCGACGCTCATGTCGGTCACGTCGGAGATG GAGGCCGAGTTTGAGTCGGTGCGCGAGCCGGTCATGCATATCCTCAGCGAGTTGGAGGATGATATCGATCGTGAT AAGCTGCGGGTACTGCTGATTTTGTCGAAGCGGATTAGCACCTTTGAGCAAAAGTCCAAGTTGGTGCGCGATGCT ATTGAGGAGTTGCTCGAGGCGGACGACGACTTGTCGGCCATGTACCTTACCGAGAAGGCGGGAGGGACGAGGCAG CGGCGCGGCAACGATGATCACACCGAGGTGGAGATGCTGCTCGAGTCGTATCACAAGCTCACCGACGAGATCGTT CAGGAGGCTGGCAACCTGGTATCCGGGATACGGAACACGGAGGAGATCGTCCGCGCCATCCTCGACGCCAACCGC AACGCCCTCATGCTCCTGGACCTCAAGTTCAGCGTCGGCACCCTCAGCCTAGCGATGGGGACCTTTGTAGCGGGC CTCTACGGCATGAACCTGGAGAACTTCATCGAAGAATCACAACTGGGCTTCGCCATCGTGGCGGGCGCCTCGGCG GCCATGTCACTGCTGGTATGCTGGTACGGGCTCGCCAAGCTGAGGCGGACGCGACGCATCAAGATGATGATGGGC GGACACGAATCGTCGCGGGTTCCTCGCGGCTTGACCTTTCGTGATGATGGGGCTTTGGGTGTGTTGGATTCGAGG AATAGGGAGTTTTTGAGGAGGGCTCAGATGCAGAGGGCTATGATGGTGAAGAAGCCTTGGTGGAGGTGA |
| Transcript | >Ophcf2|06167 ATGCAACCGGCGCCTAGACCAGCAGTCCCTCGCCTCTCCCGATTCCTCCAGCCGCGGTGGACGCGAGGACAGGTC TGGCGCGGGCCTGGCAGCTCTCTGCGCTGGGATTCGCGCCCGTTTGATGGGTCGCTTCTGTGCTGCTGCCGCTAT CACGACTGTGGCTCCGCTGCGGCGCATGACAAGGCGGCGGCGACGACGACCACGACGGGCAGCTGGAAGGATAAG CTGCGGAGCTATGGCAATGGTGGTGGCGGTGGTGGTGCAGGCGGTTCCAGGGCTTGCGCTGGGCCGCCGCGGGAT GAGTTTGCGCCGGGGGGGTCGTCTATGTTCAACAGTCGGAGGGTGATGACGGCCAAGGCGGCGTTGGAGCCTATG CTTCGATGTACAGAGGTGGATGAGAATGGCAAGGCGATCCTGACGGATGAGGAGTTTAAGAAGACGGAGTTGATT GCAAAGTTTGGCCTTTTACCTCGCGATCTGCGCAAGATTGACTCGTCCAATCTGCCTCACATACTGGTCCGGCCA TCGGCTATTCTTCTCAACCTGCTGCACCTCAAGGTGCTGATCAAGCACGACCGCGTCTTCCTCTTCGACGTACAC GGGTCCAAAGAGTCGTGGCCGCAGTCGGCCTTTATGCACGACCTCAAGAACAAGCTGGAGCAGCAGCCGAAGCCG TCGCAGGGCCCCAACGGATTACCGTACGAGTTCCGGGCTCTCGAGGCGACGCTCATGTCGGTCACGTCGGAGATG GAGGCCGAGTTTGAGTCGGTGCGCGAGCCGGTCATGCATATCCTCAGCGAGTTGGAGGATGATATCGATCGTGAT AAGCTGCGGGTACTGCTGATTTTGTCGAAGCGGATTAGCACCTTTGAGCAAAAGTCCAAGTTGGTGCGCGATGCT ATTGAGGAGTTGCTCGAGGCGGACGACGACTTGTCGGCCATGTACCTTACCGAGAAGGCGGGAGGGACGAGGCAG CGGCGCGGCAACGATGATCACACCGAGGTGGAGATGCTGCTCGAGTCGTATCACAAGCTCACCGACGAGATCGTT CAGGAGGCTGGCAACCTGGTATCCGGGATACGGAACACGGAGGAGATCGTCCGCGCCATCCTCGACGCCAACCGC AACGCCCTCATGCTCCTGGACCTCAAGTTCAGCGTCGGCACCCTCAGCCTAGCGATGGGGACCTTTGTAGCGGGC CTCTACGGCATGAACCTGGAGAACTTCATCGAAGAATCACAACTGGGCTTCGCCATCGTGGCGGGCGCCTCGGCG GCCATGTCACTGCTGGTATGCTGGTACGGGCTCGCCAAGCTGAGGCGGACGCGACGCATCAAGATGATGATGGGC GGACACGAATCGTCGCGGGTTCCTCGCGGCTTGACCTTTCGTGATGATGGGGCTTTGGGTGTGTTGGATTCGAGG AATAGGGAGTTTTTGAGGAGGGCTCAGATGCAGAGGGCTATGATGGTGAAGAAGCCTTGGTGGAGGTGA |
| Gene | >Ophcf2|06167 ATGCAACCGGCGCCTAGACCAGCAGTCCCTCGCCTCTCCCGATTCCTCCAGCCGCGGTGGACGCGAGGACAGGTC TGGCGCGGGCCTGGCAGCTCTCTGCGCTGGGATTCGCGCCCGTTTGATGGGTCGCTTCTGTGCTGCTGCCGCTAT CACGACTGTGGCTCCGCTGCGGCGCATGACAAGGCGGCGGCGACGACGACCACGACGGGCAGCTGGAAGGATAAG CTGCGGAGCTATGGCAATGGTGGTGGCGGTGGTGGTGCAGGCGGTTCCAGGGCTTGCGCTGGGCCGCCGCGGGAT GAGTTTGCGCCGGGGGGGTCGTCTATGTTCAACAGTCGGAGGGTGATGACGGCCAAGGCGGCGTTGGAGCCTATG CTTCGATGTACAGAGGTGGATGAGAATGGCAAGGCGATCCTGACGGATGAGGAGTTTAAGAAGACGGAGTTGATT GCAAAGGTGAGATGATTGTCCTCTTTTTCTCTCCTTTGCTTGCTGCCCCTTTTGTTTCCCGTGGCTGGTCGGCTG CAAGCTGGTTTTGACGAGAGCTGAGAAGAGACGACGACGACACTGTCAAATCATGTATAGTTTGGCCTTTTACCT CGCGATCTGCGCAAGATTGACTCGTCCAATCTGCCTCACATACTGGTCCGGCCATCGGCTATTCTTCTCAACCTG CTGCACCTCAAGGTGCTGATCAAGCACGACCGCGTCTTCCTCTTCGACGTACACGGGTCCAAAGAGTCGTGGCCG CAGTCGGCCTTTATGCACGACCTCAAGAACAAGCTGGAGCAGCAGCCGAAGCCGTCGCAGGGCCCCAACGGATTA CCGTACGAGTTCCGGGCTCTCGAGGCGACGCTCATGTCGGTCACGTCGGAGATGGAGGCCGAGTTTGAGTCGGTG CGCGAGCCGGTCATGCATATCCTCAGCGAGTTGGAGGATGATATCGATCGTGATAAGCTGCGGGTACTGCTGATT TTGTCGAAGCGGATTAGCACCTTTGAGCAAAAGTCCAAGTTGGTGCGCGATGCTATTGAGGAGTTGCTCGAGGCG GACGACGACTTGTCGGCCATGTACCTTACCGAGAAGGCGGGAGGGACGAGGCAGCGGCGCGGCAACGATGATCAC ACCGAGGTGGAGATGCTGCTCGAGTCGTATCACAAGCTCACCGACGAGATCGTTCAGGAGGCTGGCAACCTGGTA TCCGGGATACGGAACACGGAGGAGATGTACGACATGTCCCGCTGTCTCGGGTCTGGCGAGGTTCAGCTAACGAAA TGTCCAGCGTCCGCGCCATCCTCGACGCCAACCGCAACGCCCTCATGCTCCTGGACCTCAAGTTCAGCGTCGGCA CCCTCAGCCTAGCGATGGGGACCTTTGTAGCGGGCCTCTACGGCATGAACCTGGAGAACTTCATCGAAGAATCAC AACTGGGCTTCGCCATCGTGGCGGGCGCCTCGGCGGCCATGTCACTGCTGGTATGCTGGTACGGGCTCGCCAAGC TGAGGCGGACGCGACGCATCAAGATGATGATGGGCGGACACGAATCGTCGCGGGTTCCTCGCGGCTTGACCTTTC GTGATGATGGGGCTTTGGGTGTGTTGGATTCGAGGAATAGGGAGTTTTTGAGGAGGGCTCAGATGCAGAGGGCTA TGATGGTGAAGAAGCCTTGGTGGAGGTGA |