© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|06094 |
| Gene name | |
| Location | scaffold_07:1223553..1224516 |
| Strand | + |
| Gene length (bp) | 963 |
| Transcript length (bp) | 909 |
| Coding sequence length (bp) | 909 |
| Protein length (aa) | 303 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12146 | Hydrolase_4 | Serine aminopeptidase, S33 | 5.7E-52 | 27 | 276 |
| PF12697 | Abhydrolase_6 | Alpha/beta hydrolase family | 1.3E-15 | 31 | 284 |
| PF00561 | Abhydrolase_1 | alpha/beta hydrolase fold | 4.3E-11 | 31 | 144 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 37 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 41.64 | 21.04 | 62.25 |
| Alive | In ants, during behavior modification | 213.03 | 118.39 | 307.68 |
| Dead | In ants, recently dead | 79.12 | 44.00 | 114.24 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.000238 | yes |
| Dead | Fungus | 0.001226 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06094 MASIDESTFEHGDSSFYSKTWTPHGAIKAKLVFVHGFSEHINRYNDFFPKLAKHGIQVLSWDQRGWGRSASKSWQ KGRTGPTAEVIADVAAFVREKLVESDEASRVPVFVMGHSMGGGQVLTLAGDDNYADLVGRVRGWILESPFVGFPP GGEPSSVTVFAGRLMGRLLPKQQMKHAVAAELLTRDLDIVKSVRDDPLCHDTGTLEGLASMLDRAENLSSGRVRL GKHVRSVLLTHGTKDMVCCCDAAVRFVDGQDAVEDKTWKLYDGAYHQLHTDHCKDDFARDVAEWILKRSDEQVEA KL* |
| Coding | >Ophcf2|06094 ATGGCGAGCATTGACGAGTCGACCTTTGAGCATGGAGATTCCAGCTTCTACTCCAAGACGTGGACGCCACACGGC GCCATCAAGGCCAAGCTGGTATTCGTGCACGGCTTCAGCGAGCACATCAACCGCTATAACGATTTCTTCCCCAAG CTGGCCAAACACGGCATCCAGGTACTGTCCTGGGATCAGCGCGGATGGGGCCGCAGCGCAAGCAAGTCGTGGCAG AAGGGCCGGACGGGTCCGACAGCCGAGGTGATTGCCGACGTGGCAGCCTTTGTGCGCGAAAAGCTGGTGGAATCG GACGAAGCGTCGCGGGTGCCCGTCTTCGTCATGGGCCACTCCATGGGCGGAGGCCAGGTTCTGACGCTGGCGGGT GACGATAACTACGCTGACCTGGTGGGACGCGTGCGAGGCTGGATACTCGAGAGCCCCTTTGTTGGCTTCCCTCCA GGCGGAGAGCCCAGCAGCGTGACCGTCTTCGCTGGCCGGCTCATGGGCCGACTTCTACCCAAGCAGCAGATGAAG CACGCCGTGGCAGCCGAGTTGCTAACGCGAGACCTGGACATCGTCAAGTCTGTGCGCGACGACCCTCTATGCCAC GACACGGGTACGCTCGAAGGACTCGCCTCGATGTTGGACCGAGCAGAGAACCTCTCCTCCGGCCGAGTCCGGCTC GGGAAGCACGTGCGCAGCGTGCTGCTGACGCATGGAACAAAGGACATGGTTTGCTGCTGCGACGCGGCTGTTCGG TTCGTCGATGGCCAGGATGCTGTTGAGGATAAGACGTGGAAGCTGTATGACGGCGCGTATCATCAGCTTCATACT GATCACTGTAAGGATGATTTTGCGAGGGATGTGGCTGAGTGGATCTTGAAGCGGAGTGATGAGCAGGTCGAGGCC AAGTTGTGA |
| Transcript | >Ophcf2|06094 ATGGCGAGCATTGACGAGTCGACCTTTGAGCATGGAGATTCCAGCTTCTACTCCAAGACGTGGACGCCACACGGC GCCATCAAGGCCAAGCTGGTATTCGTGCACGGCTTCAGCGAGCACATCAACCGCTATAACGATTTCTTCCCCAAG CTGGCCAAACACGGCATCCAGGTACTGTCCTGGGATCAGCGCGGATGGGGCCGCAGCGCAAGCAAGTCGTGGCAG AAGGGCCGGACGGGTCCGACAGCCGAGGTGATTGCCGACGTGGCAGCCTTTGTGCGCGAAAAGCTGGTGGAATCG GACGAAGCGTCGCGGGTGCCCGTCTTCGTCATGGGCCACTCCATGGGCGGAGGCCAGGTTCTGACGCTGGCGGGT GACGATAACTACGCTGACCTGGTGGGACGCGTGCGAGGCTGGATACTCGAGAGCCCCTTTGTTGGCTTCCCTCCA GGCGGAGAGCCCAGCAGCGTGACCGTCTTCGCTGGCCGGCTCATGGGCCGACTTCTACCCAAGCAGCAGATGAAG CACGCCGTGGCAGCCGAGTTGCTAACGCGAGACCTGGACATCGTCAAGTCTGTGCGCGACGACCCTCTATGCCAC GACACGGGTACGCTCGAAGGACTCGCCTCGATGTTGGACCGAGCAGAGAACCTCTCCTCCGGCCGAGTCCGGCTC GGGAAGCACGTGCGCAGCGTGCTGCTGACGCATGGAACAAAGGACATGGTTTGCTGCTGCGACGCGGCTGTTCGG TTCGTCGATGGCCAGGATGCTGTTGAGGATAAGACGTGGAAGCTGTATGACGGCGCGTATCATCAGCTTCATACT GATCACTGTAAGGATGATTTTGCGAGGGATGTGGCTGAGTGGATCTTGAAGCGGAGTGATGAGCAGGTCGAGGCC AAGTTGTGA |
| Gene | >Ophcf2|06094 ATGGCGAGCATTGACGAGTCGACCTTTGAGCATGGAGATTCCAGCTTCTACTCCAAGACGTGGACGGTGAGTGGA AGCGAGAACGTTGACAGCTGTGGACGGCGCTGATGCCCAATTCAGCCACACGGCGCCATCAAGGCCAAGCTGGTA TTCGTGCACGGCTTCAGCGAGCACATCAACCGCTATAACGATTTCTTCCCCAAGCTGGCCAAACACGGCATCCAG GTACTGTCCTGGGATCAGCGCGGATGGGGCCGCAGCGCAAGCAAGTCGTGGCAGAAGGGCCGGACGGGTCCGACA GCCGAGGTGATTGCCGACGTGGCAGCCTTTGTGCGCGAAAAGCTGGTGGAATCGGACGAAGCGTCGCGGGTGCCC GTCTTCGTCATGGGCCACTCCATGGGCGGAGGCCAGGTTCTGACGCTGGCGGGTGACGATAACTACGCTGACCTG GTGGGACGCGTGCGAGGCTGGATACTCGAGAGCCCCTTTGTTGGCTTCCCTCCAGGCGGAGAGCCCAGCAGCGTG ACCGTCTTCGCTGGCCGGCTCATGGGCCGACTTCTACCCAAGCAGCAGATGAAGCACGCCGTGGCAGCCGAGTTG CTAACGCGAGACCTGGACATCGTCAAGTCTGTGCGCGACGACCCTCTATGCCACGACACGGGTACGCTCGAAGGA CTCGCCTCGATGTTGGACCGAGCAGAGAACCTCTCCTCCGGCCGAGTCCGGCTCGGGAAGCACGTGCGCAGCGTG CTGCTGACGCATGGAACAAAGGACATGGTTTGCTGCTGCGACGCGGCTGTTCGGTTCGTCGATGGCCAGGATGCT GTTGAGGATAAGACGTGGAAGCTGTATGACGGCGCGTATCATCAGCTTCATACTGATCACTGTAAGGATGATTTT GCGAGGGATGTGGCTGAGTGGATCTTGAAGCGGAGTGATGAGCAGGTCGAGGCCAAGTTGTGA |