© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06090 |
| Gene name | |
| Location | scaffold_07:1213425..1213862 |
| Strand | - |
| Gene length (bp) | 437 |
| Transcript length (bp) | 213 |
| Coding sequence length (bp) | 213 |
| Protein length (aa) | 71 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02238 | COX7a | Cytochrome c oxidase subunit VII | 1.0E-19 | 8 | 62 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 36 | 58 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 1981.63 | 1131.16 | 2832.10 |
| Alive | In ants, during behavior modification | 1298.80 | 691.50 | 1906.10 |
| Dead | In ants, recently dead | 1124.84 | 599.62 | 1650.06 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.030531 | yes |
| Alive | Dead | 0.463876 | no |
| Dead | Fungus | 0.002117 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06090 MGLIDKKNHVIDHQRYYQNAFQAHTRLWRINPRSRIYLVPFQVLVWGSLGATLYAAGRKVCGYNTWFSKN* |
| Coding | >Ophcf2|06090 ATGGGTCTAATCGACAAGAAGAACCATGTGATTGATCACCAGCGCTACTACCAGAATGCCTTTCAGGCGCATACT CGCCTCTGGAGGATTAATCCACGATCTCGCATATACCTGGTGCCCTTCCAAGTCTTGGTCTGGGGCAGCTTGGGA GCTACATTGTACGCCGCTGGTCGCAAGGTCTGTGGCTACAACACATGGTTCAGCAAGAATTAA |
| Transcript | >Ophcf2|06090 ATGGGTCTAATCGACAAGAAGAACCATGTGATTGATCACCAGCGCTACTACCAGAATGCCTTTCAGGCGCATACT CGCCTCTGGAGGATTAATCCACGATCTCGCATATACCTGGTGCCCTTCCAAGTCTTGGTCTGGGGCAGCTTGGGA GCTACATTGTACGCCGCTGGTCGCAAGGTCTGTGGCTACAACACATGGTTCAGCAAGAATTAA |
| Gene | >Ophcf2|06090 ATGGGGTATGTCTCTGAATCTCGCGCAGCTTCCAGAGTCTATTCGTGACAATCCCTGCCCGCCGCTCAGGGTTCC CGATCGCGCGTTGCCGCCAGTCCGCCAACAGCACGCTGACGGAGGAACAGTCTAATCGACAAGAAGAACCATGTG ATTGATCACCAGCGCTACTACCAGAATGCCTTTCAGGCGCATACTCGCCTCTGGAGGATTGTACGGCCGCAGAGC GGGAGCTGATGAGGCCATAAAATTGACAAGGTTTCTAGAATCCACGATCTCGCATATACCTGGTGCCCTTCCAAG TCTTGGTCTGGGGCAGCTTGGGAGGTTTGTCTCAAGGCTCGCTTGCGCTTTCTTCTCATTCTAACGGGCTCACAG CTACATTGTACGCCGCTGGTCGCAAGGTCTGTGGCTACAACACATGGTTCAGCAAGAATTAA |