© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06077 |
| Gene name | |
| Location | scaffold_07:1179120..1179747 |
| Strand | + |
| Gene length (bp) | 627 |
| Transcript length (bp) | 453 |
| Coding sequence length (bp) | 453 |
| Protein length (aa) | 151 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01124 | MAPEG | MAPEG family | 8.9E-22 | 15 | 141 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 27 | 17 |
| 2 | 79 | 101 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 15.13 | 3.29 | 26.97 |
| Alive | In ants, during behavior modification | 13.39 | 2.76 | 24.01 |
| Dead | In ants, recently dead | 10.16 | 1.40 | 18.92 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.772165 | no |
| Alive | Dead | 0.425052 | no |
| Dead | Fungus | 0.315295 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06077 MAIPLELPDQYGLVLAAATSTFFVNTMHAFRTMKFRKASGVEYPQSYATNEQAAKNPSAYRFNCAQRAHHNFTEN HTSLLGALLIAGIRYPVPAAALGAGWSLSRIMYLLGYTSSAGPRGRLLGAIGGNLSDLFLKLAAAYSSAMFVLGK * |
| Coding | >Ophcf2|06077 ATGGCGATTCCTCTTGAACTCCCTGATCAGTATGGCCTGGTGCTCGCGGCCGCCACGAGTACTTTCTTCGTCAAT ACAATGCACGCCTTCCGCACCATGAAGTTCCGCAAAGCCAGCGGAGTCGAATATCCTCAAAGCTACGCCACCAAC GAACAGGCGGCCAAGAATCCGTCCGCCTACCGATTCAACTGCGCTCAACGAGCTCACCACAACTTTACCGAGAAC CACACATCTCTTCTCGGCGCTTTGCTCATCGCTGGTATTCGCTATCCTGTTCCTGCGGCCGCCCTCGGAGCTGGA TGGAGCTTGTCGAGAATTATGTACCTGCTCGGCTATACCAGCTCTGCCGGCCCTCGCGGCCGACTGCTCGGTGCC ATTGGCGGCAATCTGAGCGACTTGTTCCTCAAACTAGCCGCGGCCTACTCATCTGCCATGTTCGTTCTTGGCAAA TAG |
| Transcript | >Ophcf2|06077 ATGGCGATTCCTCTTGAACTCCCTGATCAGTATGGCCTGGTGCTCGCGGCCGCCACGAGTACTTTCTTCGTCAAT ACAATGCACGCCTTCCGCACCATGAAGTTCCGCAAAGCCAGCGGAGTCGAATATCCTCAAAGCTACGCCACCAAC GAACAGGCGGCCAAGAATCCGTCCGCCTACCGATTCAACTGCGCTCAACGAGCTCACCACAACTTTACCGAGAAC CACACATCTCTTCTCGGCGCTTTGCTCATCGCTGGTATTCGCTATCCTGTTCCTGCGGCCGCCCTCGGAGCTGGA TGGAGCTTGTCGAGAATTATGTACCTGCTCGGCTATACCAGCTCTGCCGGCCCTCGCGGCCGACTGCTCGGTGCC ATTGGCGGCAATCTGAGCGACTTGTTCCTCAAACTAGCCGCGGCCTACTCATCTGCCATGTTCGTTCTTGGCAAA TAG |
| Gene | >Ophcf2|06077 ATGGCGATTCCTCTTGAACTCCCTGATCAGTATGGGTCAGTGAGAGAGAGGACCTTGGAATATCGTTCCATGAGA GATGGCTAACAGCTGCCTATCCTTCAGCCTGGTGCTCGCGGCCGCCACGAGTACTTTCTTCGTCAATACAATGCA CGCCTTCCGCACCATGAAGTTCCGCAAAGCCAGCGGAGTCGAATATCCTCAAAGCTACGCCACCAACGAACAGGC GGCCAAGAATCCGTCCGCCTACCGATTCAACTGCGGTCCGTTGCCTGTCTTGTTCCCCAGCCGTTCGTCACTGAT ACTTGACCAGCTCAACGAGCTCACCACAACTTTACCGAGAACCACACATCTCTTCTCGGCGCTTTGCTCATCGCT GGTATTCGCTATCCTGTTCCTGCGGCCGCCCTCGGAGCTGGATGGAGCTTGTCGAGAATTATGTACCTGCTCGGC TATACCAGCTCTGCCGGCCCTCGCGGCCGACTGCTGTATGTCCTTTTTTTTTCATGCTTGTCGTCAGCCGAACCG AACTAATGCGTCTTCAGCGGTGCCATTGGCGGCAATCTGAGCGACTTGTTCCTCAAACTAGCCGCGGCCTACTCA TCTGCCATGTTCGTTCTTGGCAAATAG |