© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06067 |
| Gene name | |
| Location | scaffold_07:900545..901510 |
| Strand | + |
| Gene length (bp) | 965 |
| Transcript length (bp) | 546 |
| Coding sequence length (bp) | 546 |
| Protein length (aa) | 182 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04161 | Arv1 | Arv1-like family | 3.2E-46 | 3 | 138 |
| PF04161 | Arv1 | Arv1-like family | 1.9E-08 | 133 | 171 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0032366 | intracellular sterol transport | Yes |
| GO:0015918 | sterol transport | No |
| GO:0051641 | cellular localization | No |
| GO:0051179 | localization | No |
| GO:0046907 | intracellular transport | No |
| GO:0071702 | organic substance transport | No |
| GO:0015850 | organic hydroxy compound transport | No |
| GO:0006869 | lipid transport | No |
| GO:0008150 | biological_process | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0032365 | intracellular lipid transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 132 | 154 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 151.54 | 83.64 | 219.43 |
| Alive | In ants, during behavior modification | 173.80 | 96.52 | 251.09 |
| Dead | In ants, recently dead | 167.60 | 93.64 | 241.55 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.534640 | no |
| Alive | Dead | 0.863128 | no |
| Dead | Fungus | 0.655760 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06067 MPICIECRHYVKTLWTKYSGAGDQSSGHNIRLTVCRQCGRFCDKYVEHDFIVLFIDLVLIKPQVYRHLLHNTLMR ELDGFDPSIIRLGVLLLLFDVYLTWARIEKQTVPTASPSESNLGRLARQPIVLQYMFFLLLSLLVSSSTKLFPIL MVIWEYDVPAAARSLGWALLLVQHPDGLWAD* |
| Coding | >Ophcf2|06067 ATGCCTATCTGTATTGAATGTCGACATTATGTGAAGACTCTCTGGACCAAGTACTCCGGTGCTGGTGACCAGTCA TCCGGCCACAACATTCGATTGACTGTTTGCCGACAATGTGGTCGGTTCTGCGACAAATACGTGGAGCACGACTTC ATCGTCTTGTTCATTGACCTTGTGTTGATCAAGCCGCAAGTCTACCGCCATCTTCTACACAACACCCTCATGCGC GAATTGGATGGCTTTGATCCGTCAATCATACGTCTTGGGGTTTTACTACTACTTTTCGATGTCTACCTCACGTGG GCTCGCATTGAGAAGCAGACAGTACCCACTGCGTCTCCTAGCGAAAGCAACCTGGGTCGACTTGCGCGTCAGCCA ATTGTGTTGCAGTATATGTTCTTTTTGCTGCTGTCCCTGCTTGTCTCGTCCTCTACCAAACTTTTCCCCATTTTG ATGGTCATCTGGGAATATGACGTCCCCGCCGCCGCACGATCACTGGGCTGGGCGCTTTTGCTGGTGCAGCATCCC GATGGGCTATGGGCCGATTAG |
| Transcript | >Ophcf2|06067 ATGCCTATCTGTATTGAATGTCGACATTATGTGAAGACTCTCTGGACCAAGTACTCCGGTGCTGGTGACCAGTCA TCCGGCCACAACATTCGATTGACTGTTTGCCGACAATGTGGTCGGTTCTGCGACAAATACGTGGAGCACGACTTC ATCGTCTTGTTCATTGACCTTGTGTTGATCAAGCCGCAAGTCTACCGCCATCTTCTACACAACACCCTCATGCGC GAATTGGATGGCTTTGATCCGTCAATCATACGTCTTGGGGTTTTACTACTACTTTTCGATGTCTACCTCACGTGG GCTCGCATTGAGAAGCAGACAGTACCCACTGCGTCTCCTAGCGAAAGCAACCTGGGTCGACTTGCGCGTCAGCCA ATTGTGTTGCAGTATATGTTCTTTTTGCTGCTGTCCCTGCTTGTCTCGTCCTCTACCAAACTTTTCCCCATTTTG ATGGTCATCTGGGAATATGACGTCCCCGCCGCCGCACGATCACTGGGCTGGGCGCTTTTGCTGGTGCAGCATCCC GATGGGCTATGGGCCGATTAG |
| Gene | >Ophcf2|06067 ATGCCTATCTGTATTGAATGTCGACATTATGTGAAGACTCTCTGGACCAAGTACTCCGGTGCTGGTGACCAGTCA TCCGGCCACAACATTCGATTGACTGTTTGCCGACAATGTGGTCGGTTCTGCGACAAATACGTGGAGCACGACTTC ATCGTCTTGTTCATTGACCTTGTGTTGATCAAGCCGCAAGCATGTTGCCTCTCTAGCGATTTTTTGAAGACTGCT GATGTTCTAACTCCTCGTTGAAGGTCTACCGCCATCTTCTACACAACACCCTCATGCGCGAATTGGATGGCTTTG ATGTAAGTTACTTCACTACATGCGCGATCCGACAAATCTTCCACTTTCATACCCTCTTGTCAAACATTCCAGGCA CCAACTGTCTTCTGACCGAAGTTTCCCGAGGCGGTAGCCGTCAATCATACGTCTTGGGGTTTTACTACTACTTTT CGATGTCTACCTCACGTGGGCTCGCATTGAGAAGCAGACAGTACCCACTGCGTCTCCTAGCGAAAGCAACCTGGG TCGACTTGCGCGTCAGCCAATTGTGTTGCAGTATATGTTCTTTTGTCAGTCTTCGTCATAGGTATTGCATAGGAT ATTCATGTTCATCACTCACTACTTGATAGTGCTGCTGTGTACGCTCTCGACCACGGCTTTTCACGTCAGCATTCG TTTCTTGGCATCTTCACCATATTCGCCACTACTCTCTTTGGGTATAATGGCTCGACGAACGAGACCCAATTCTAT TTCGACAGCCCTGCTTGTCTCGTCCTCTACCAAACTTTTCCCCATTTTGATGGTCATCTGGGAATATGACGTCCC CGCCGCCGCACGATCACTGGGCTGGGCGGTAGTAGCAAATAATGTCGAGGCGTTGCGAATTCTCCTAGACTGCAG ATATCACACAGCTTGCATACTAGCTTTTGCTGGTGCAGCATCCCGATGGGCTATGGGCCGATTAG |