© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06060 |
| Gene name | |
| Location | scaffold_07:681339..682524 |
| Strand | + |
| Gene length (bp) | 1185 |
| Transcript length (bp) | 828 |
| Coding sequence length (bp) | 828 |
| Protein length (aa) | 276 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00561 | Abhydrolase_1 | alpha/beta hydrolase fold | 4.6E-21 | 51 | 152 |
| PF12697 | Abhydrolase_6 | Alpha/beta hydrolase family | 6.9E-13 | 53 | 180 |
| PF12146 | Hydrolase_4 | Serine aminopeptidase, S33 | 4.5E-11 | 50 | 148 |
| PF07819 | PGAP1 | PGAP1-like protein | 2.3E-05 | 52 | 158 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016788 | hydrolase activity, acting on ester bonds | Yes |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 175.42 | 101.40 | 249.44 |
| Alive | In ants, during behavior modification | 137.76 | 74.37 | 201.14 |
| Dead | In ants, recently dead | 83.81 | 45.48 | 122.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.220474 | no |
| Alive | Dead | 0.001945 | yes |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06060 MSGILQRPGYLHLPLEFARAESQIKRAIISRGLAYDLYETQKTNRKYHAKPPIIFLHGLFGSRRNNQSVCKLLSR DLNTQVYALDLRNHGDSFHHPDHDYNVMADDVSTFMKDNGLKEATVIGHSMGAKVAMTLALRAPDLVASLISVDN APVRKHNQDDFGQYIRGMAQVEAASLTSRSQADKVLEQFVPSPAVRQFLLGNLQRPQGSPKLKFRIPLNILHGSL GVLGDFPDFASTQQRFSKPALFIRGNKSDYASMLATGLYRNSQRTSVKKS* |
| Coding | >Ophcf2|06060 ATGTCGGGAATTCTACAAAGGCCGGGCTATCTTCATTTGCCCCTTGAGTTTGCAAGAGCAGAATCGCAGATTAAA CGTGCCATCATCTCACGCGGTCTGGCTTACGACTTGTATGAGACGCAGAAAACCAACCGAAAATATCATGCCAAG CCCCCAATCATATTCTTGCACGGACTCTTTGGATCCAGACGGAATAATCAATCTGTCTGCAAGTTACTATCACGG GATTTGAACACACAGGTATACGCTTTGGATTTGAGAAACCATGGCGACTCTTTTCATCACCCTGACCATGATTAC AATGTAATGGCAGATGATGTCTCGACATTCATGAAAGACAATGGATTAAAAGAAGCCACTGTCATTGGTCATTCT ATGGGAGCTAAAGTAGCCATGACTTTGGCTCTGCGCGCACCAGATTTGGTTGCGTCGTTGATCTCCGTGGACAAT GCTCCTGTTCGGAAACACAATCAAGATGACTTTGGCCAATACATTCGAGGCATGGCGCAAGTCGAGGCCGCTAGT CTTACTTCCCGGAGCCAAGCTGATAAAGTTCTAGAACAATTTGTACCCTCCCCTGCTGTGCGCCAGTTTTTGTTG GGCAATCTTCAAAGGCCGCAAGGATCACCGAAGCTTAAGTTTCGCATTCCGCTGAATATCTTGCATGGGTCATTA GGTGTGCTAGGTGACTTTCCGGATTTCGCGAGCACTCAGCAGCGCTTCTCAAAGCCGGCGTTGTTCATCCGTGGC AACAAGAGCGATTATGCATCGATGCTGGCCACTGGCTTATATCGGAACAGCCAGAGGACTTCTGTAAAGAAGTCT TGA |
| Transcript | >Ophcf2|06060 ATGTCGGGAATTCTACAAAGGCCGGGCTATCTTCATTTGCCCCTTGAGTTTGCAAGAGCAGAATCGCAGATTAAA CGTGCCATCATCTCACGCGGTCTGGCTTACGACTTGTATGAGACGCAGAAAACCAACCGAAAATATCATGCCAAG CCCCCAATCATATTCTTGCACGGACTCTTTGGATCCAGACGGAATAATCAATCTGTCTGCAAGTTACTATCACGG GATTTGAACACACAGGTATACGCTTTGGATTTGAGAAACCATGGCGACTCTTTTCATCACCCTGACCATGATTAC AATGTAATGGCAGATGATGTCTCGACATTCATGAAAGACAATGGATTAAAAGAAGCCACTGTCATTGGTCATTCT ATGGGAGCTAAAGTAGCCATGACTTTGGCTCTGCGCGCACCAGATTTGGTTGCGTCGTTGATCTCCGTGGACAAT GCTCCTGTTCGGAAACACAATCAAGATGACTTTGGCCAATACATTCGAGGCATGGCGCAAGTCGAGGCCGCTAGT CTTACTTCCCGGAGCCAAGCTGATAAAGTTCTAGAACAATTTGTACCCTCCCCTGCTGTGCGCCAGTTTTTGTTG GGCAATCTTCAAAGGCCGCAAGGATCACCGAAGCTTAAGTTTCGCATTCCGCTGAATATCTTGCATGGGTCATTA GGTGTGCTAGGTGACTTTCCGGATTTCGCGAGCACTCAGCAGCGCTTCTCAAAGCCGGCGTTGTTCATCCGTGGC AACAAGAGCGATTATGCATCGATGCTGGCCACTGGCTTATATCGGAACAGCCAGAGGACTTCTGTAAAGAAGTCT TGA |
| Gene | >Ophcf2|06060 ATGTCGGGAATTCTACAAAGGCCGGGCTATCTTCATTTGCCCCTTGAGTTTGCAAGAGCAGAATCGCAGATTAAA CGTGCCATCATCTCACGCGGTCTGGCTTACGACTTGTATGAGACGCAGAAAACCAACCGAAAATATCATGCCAAG CCCCCAATCATATTCTTGCACGGACTCTTTGGATCCAGACGGAATAATCAATCTGTCTGCAAGTGCGTTTCTGAC GCGCAGCGCCAGGAGTTTGTGGATGCAATGAAGATTGACCATTTGTCAGGTTACTATCACGGGATTTGAACACAC AGGTATACGCTTTGGTGAGCAAAATTCTTATACGACAACAATAACGAACATGATTATGTGCTAAACAGTCAAGGA TTTGAGAAACCATGGCGACTCTTTTCATCACCCTGACCATGATTACAATGTAATGGCAGATGATGTCTCGACATT CATGAAAGACAATGGATTAAAAGAAGCCACTGTCATTGGTCATTCTATGTCAGTCCACATTCTTCGCTAGTATAC TGCTCTGCATATTGATGATCCTACCTAGGGGAGCTAAAGTAGCCATGACTTTGGCTCTGCGCGCACCAGATTTGG TTGCGTCGTTGATCTCCGTGGACAATGCTCCTGTTCGGAAACACAATCAAGATGACTTTGGCCAATACATTCGAG GCATGGCGCAAGTCGAGGCCGCTAGTCTTACTTCCCGGAGCCAAGCTGATAAAGTTCTAGAACAATTTGTACCCG TATGTGATCATCCCGTCCGTCGCCTAGCTAAATTAACCGGCTAATTGCCCGCAACGACGATACCTAGTCCCCTGC TGTGCGCCAGTTTTTGTTGGGCAATCTTCAAAGGCCGCAAGGATCACCGAAGCTTAAGTTTCGCATTCCGCTGAA TATCTTGCATGGGTCATTAGGTGTGCTAGGTGACTTTCCGGATTTCGCGAGCACTCAGCAGCGCTTCTCAAAGCC GGCGTTGTTCATCCGTGGCAACAAGAGCGATTATGTGAATGGCGAGGCAATTTCACACATCAGTCATCTCTTCTT AAATGTCAAAATCGTAGGCATCGATGCTGGCCACTGGCTTATATCGGAACAGCCAGAGGACTTCTGTAAAGGTAT GTGAATTTATCGTCGCTCGAAGCTTGCTGTGGGGATTCTAACATCATAAAGAAGTCTTGA |