© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06039 |
| Gene name | |
| Location | scaffold_07:470981..471374 |
| Strand | + |
| Gene length (bp) | 393 |
| Transcript length (bp) | 393 |
| Coding sequence length (bp) | 393 |
| Protein length (aa) | 131 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09435 | DUF2015 | Fungal protein of unknown function (DUF2015) | 3.7E-45 | 12 | 125 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 24 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 204.15 | 108.47 | 299.82 |
| Alive | In ants, during behavior modification | 255.84 | 140.39 | 371.28 |
| Dead | In ants, recently dead | 311.28 | 174.16 | 448.40 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.291814 | no |
| Alive | Dead | 0.257582 | no |
| Dead | Fungus | 0.028747 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06039 MAYKYILFSFSVFLFIVATALFVTRDHWRRHVPAIRLPGAGYIYSQLPRSFVDDIEAGLSSDTFDLGGNVEAGDG RAGLDSAGKAEILKIMKKRRMTFDQARKTYMENRFKANGIGADGRPRDPKFVSFS* |
| Coding | >Ophcf2|06039 ATGGCCTACAAATACATCCTCTTCAGCTTCTCCGTCTTCCTCTTCATCGTCGCCACCGCCCTCTTCGTCACCCGC GATCACTGGCGTCGTCACGTTCCCGCCATTCGTCTTCCCGGCGCCGGCTACATCTACTCTCAGTTGCCCCGGAGC TTCGTCGACGATATCGAGGCCGGGCTGTCGAGCGATACCTTTGACCTGGGCGGCAATGTCGAGGCTGGCGACGGT CGCGCAGGCCTAGACAGCGCGGGAAAGGCCGAGATTCTCAAGATCATGAAGAAGAGGCGCATGACGTTTGACCAG GCTCGCAAGACGTATATGGAGAACCGGTTCAAGGCCAACGGTATCGGCGCCGACGGCCGTCCGCGGGATCCCAAG TTTGTCAGCTTTTCCTGA |
| Transcript | >Ophcf2|06039 ATGGCCTACAAATACATCCTCTTCAGCTTCTCCGTCTTCCTCTTCATCGTCGCCACCGCCCTCTTCGTCACCCGC GATCACTGGCGTCGTCACGTTCCCGCCATTCGTCTTCCCGGCGCCGGCTACATCTACTCTCAGTTGCCCCGGAGC TTCGTCGACGATATCGAGGCCGGGCTGTCGAGCGATACCTTTGACCTGGGCGGCAATGTCGAGGCTGGCGACGGT CGCGCAGGCCTAGACAGCGCGGGAAAGGCCGAGATTCTCAAGATCATGAAGAAGAGGCGCATGACGTTTGACCAG GCTCGCAAGACGTATATGGAGAACCGGTTCAAGGCCAACGGTATCGGCGCCGACGGCCGTCCGCGGGATCCCAAG TTTGTCAGCTTTTCCTGA |
| Gene | >Ophcf2|06039 ATGGCCTACAAATACATCCTCTTCAGCTTCTCCGTCTTCCTCTTCATCGTCGCCACCGCCCTCTTCGTCACCCGC GATCACTGGCGTCGTCACGTTCCCGCCATTCGTCTTCCCGGCGCCGGCTACATCTACTCTCAGTTGCCCCGGAGC TTCGTCGACGATATCGAGGCCGGGCTGTCGAGCGATACCTTTGACCTGGGCGGCAATGTCGAGGCTGGCGACGGT CGCGCAGGCCTAGACAGCGCGGGAAAGGCCGAGATTCTCAAGATCATGAAGAAGAGGCGCATGACGTTTGACCAG GCTCGCAAGACGTATATGGAGAACCGGTTCAAGGCCAACGGTATCGGCGCCGACGGCCGTCCGCGGGATCCCAAG TTTGTCAGCTTTTCCTGA |