© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|06023 |
| Gene name | |
| Location | scaffold_07:429364..430536 |
| Strand | + |
| Gene length (bp) | 1172 |
| Transcript length (bp) | 1074 |
| Coding sequence length (bp) | 1074 |
| Protein length (aa) | 358 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04116 | FA_hydroxylase | Fatty acid hydroxylase | 1.0E-22 | 202 | 337 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0008610 | lipid biosynthetic process | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0006629 | lipid metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:0009058 | biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0046872 | metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0008150 | biological_process | No |
| GO:0043167 | ion binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0008152 | metabolic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.0938 | 0.0698 | 0.0101 | 0.1026 | 0.2126 | 0.0715 | 0.9647 | 0.1886 | 0.3276 | 0.0212 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 34 | 56 | 22 |
| 2 | 189 | 211 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2372 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06023 MAASQNHTLLAGALPPLPLYSLEPTGDVFDCISDFWLSLLLPIIVYWAASLLFHVIDVWDLFPQYRLHTPDEIVR RNHAGRFEVARDVVVQQVIQVVTGAALALTEPAEMRGKAEYDVAVWASRLRIAQRALPALLRLLGLNAAAISKSV SSSHPLLARALAGGGFSPELDAPNLGVPAFAPWELTAASVVYYVLVPVLQFFAAIFVLDTWQYFLHRLMHVNRWL YTTFHSRHHRLYVPYAYGALYNHPFEGFLLDTLGAGIAFKLTGMTLRQGTCFFAFSTLKTVDDHCGYAFPWDPLQ HITSNNAAYHDIHHQTWGIKSNFSQPFFTFWDSLLNTKYKGRRGDRLADRKRAGETK* |
| Coding | >Ophcf2|06023 ATGGCCGCATCTCAGAACCACACGCTTTTGGCTGGCGCGCTGCCGCCTCTGCCCCTGTACAGTCTCGAGCCGACG GGTGACGTCTTCGACTGCATCTCCGACTTTTGGCTATCGCTCCTCCTGCCCATCATCGTCTACTGGGCTGCCTCG CTGCTGTTTCACGTCATCGATGTCTGGGACCTCTTCCCCCAGTATCGACTCCATACGCCAGATGAGATCGTCCGG CGCAACCACGCCGGTCGGTTCGAGGTGGCGCGCGACGTGGTGGTGCAACAGGTTATACAAGTCGTCACCGGCGCT GCCCTCGCCCTGACCGAACCGGCCGAGATGCGTGGCAAGGCCGAGTACGACGTGGCGGTGTGGGCCAGCCGTCTT CGCATCGCTCAGCGCGCCCTCCCAGCCCTGCTACGGCTGCTGGGCCTCAACGCCGCCGCCATCTCCAAGAGCGTG TCGTCTTCGCATCCTCTGCTGGCCCGCGCCCTAGCCGGCGGCGGCTTCTCGCCCGAGCTCGACGCTCCCAACCTC GGCGTCCCGGCCTTTGCCCCCTGGGAGTTGACGGCGGCCAGCGTCGTCTACTACGTGCTCGTCCCGGTGCTGCAG TTCTTCGCCGCCATCTTCGTCCTCGATACCTGGCAATACTTTCTCCATCGGCTCATGCACGTGAACCGCTGGCTG TATACCACGTTCCACTCGCGGCACCATCGGCTTTATGTTCCGTACGCCTACGGGGCGCTTTACAACCATCCCTTT GAGGGTTTTCTTCTCGACACGCTCGGGGCGGGCATCGCCTTTAAGCTCACGGGCATGACGCTGCGTCAGGGCACC TGCTTCTTCGCCTTCTCCACGCTCAAGACGGTCGACGACCACTGCGGCTATGCGTTCCCCTGGGACCCCTTGCAG CACATAACGAGTAACAATGCTGCCTATCACGACATCCACCACCAGACGTGGGGAATCAAGAGCAACTTTTCGCAG CCCTTTTTCACCTTTTGGGATTCGCTGCTCAACACGAAATACAAGGGCCGGCGAGGCGACCGGTTGGCGGATAGG AAGCGCGCCGGGGAGACCAAGTAA |
| Transcript | >Ophcf2|06023 ATGGCCGCATCTCAGAACCACACGCTTTTGGCTGGCGCGCTGCCGCCTCTGCCCCTGTACAGTCTCGAGCCGACG GGTGACGTCTTCGACTGCATCTCCGACTTTTGGCTATCGCTCCTCCTGCCCATCATCGTCTACTGGGCTGCCTCG CTGCTGTTTCACGTCATCGATGTCTGGGACCTCTTCCCCCAGTATCGACTCCATACGCCAGATGAGATCGTCCGG CGCAACCACGCCGGTCGGTTCGAGGTGGCGCGCGACGTGGTGGTGCAACAGGTTATACAAGTCGTCACCGGCGCT GCCCTCGCCCTGACCGAACCGGCCGAGATGCGTGGCAAGGCCGAGTACGACGTGGCGGTGTGGGCCAGCCGTCTT CGCATCGCTCAGCGCGCCCTCCCAGCCCTGCTACGGCTGCTGGGCCTCAACGCCGCCGCCATCTCCAAGAGCGTG TCGTCTTCGCATCCTCTGCTGGCCCGCGCCCTAGCCGGCGGCGGCTTCTCGCCCGAGCTCGACGCTCCCAACCTC GGCGTCCCGGCCTTTGCCCCCTGGGAGTTGACGGCGGCCAGCGTCGTCTACTACGTGCTCGTCCCGGTGCTGCAG TTCTTCGCCGCCATCTTCGTCCTCGATACCTGGCAATACTTTCTCCATCGGCTCATGCACGTGAACCGCTGGCTG TATACCACGTTCCACTCGCGGCACCATCGGCTTTATGTTCCGTACGCCTACGGGGCGCTTTACAACCATCCCTTT GAGGGTTTTCTTCTCGACACGCTCGGGGCGGGCATCGCCTTTAAGCTCACGGGCATGACGCTGCGTCAGGGCACC TGCTTCTTCGCCTTCTCCACGCTCAAGACGGTCGACGACCACTGCGGCTATGCGTTCCCCTGGGACCCCTTGCAG CACATAACGAGTAACAATGCTGCCTATCACGACATCCACCACCAGACGTGGGGAATCAAGAGCAACTTTTCGCAG CCCTTTTTCACCTTTTGGGATTCGCTGCTCAACACGAAATACAAGGGCCGGCGAGGCGACCGGTTGGCGGATAGG AAGCGCGCCGGGGAGACCAAGTAA |
| Gene | >Ophcf2|06023 ATGGCCGCATCTCAGAACCACACGCTTTTGGCTGGCGCGCTGCCGCCTCTGCCCCTGTACAGTCTCGAGCCGACG GGTGACGTCTTCGACTGCATCTCCGACTTTTGGCTATCGCTCCTCCTGCCCATCATCGTCTACTGGGCTGCCTCG CTGCTGTTTCACGTCATCGATGTCTGGGACCTCTTCCCCCAGTATCGACTCCATACGCCAGATGAGATCGTCCGG CGCAACCACGCCGGTCGGTTCGAGGTGGCGCGCGACGTGGTGGTGCAACAGGTTATACAAGTCGTCACCGGCGCT GCCCTCGCCCTGACCGAACCGGCCGAGATGCGTGGCAAGGCCGAGTACGACGTGGCGGTGTGGGCCAGCCGTCTT CGCATCGCTCAGCGCGCCCTCCCAGCCCTGCTACGGCTGCTGGGCCTCAACGCCGCCGCCATCTCCAAGAGCGTG TCGTCTTCGCATCCTCTGCTGGCCCGCGCCCTAGCCGGCGGCGGCTTCTCGCCCGAGCTCGACGCTCCCAACCTC GGCGTCCCGGCCTTTGCCCCCTGGGAGTTGACGGCGGCCAGCGTCGTCTACTACGTGCTCGTCCCGGTGCTGCAG TTCTTCGCCGCCATCTTCGTCCTCGATACCTGGCAATACTTTCTCCATCGGCTCATGCACGTGAACCGCTGGCTG TATAGTGAGTCGCCTCCCTTAACCCTTGCACAACAGCATGTCCTCTTGCCTGCCGTGAATCCCCATTCTTCCGTC GGCGGCTGACAGGAAACGTCGTGTCAGCCACGTTCCACTCGCGGCACCATCGGCTTTATGTTCCGTACGCCTACG GGGCGCTTTACAACCATCCCTTTGAGGGTTTTCTTCTCGACACGCTCGGGGCGGGCATCGCCTTTAAGCTCACGG GCATGACGCTGCGTCAGGGCACCTGCTTCTTCGCCTTCTCCACGCTCAAGACGGTCGACGACCACTGCGGCTATG CGTTCCCCTGGGACCCCTTGCAGCACATAACGAGTAACAATGCTGCCTATCACGACATCCACCACCAGACGTGGG GAATCAAGAGCAACTTTTCGCAGCCCTTTTTCACCTTTTGGGATTCGCTGCTCAACACGAAATACAAGGGCCGGC GAGGCGACCGGTTGGCGGATAGGAAGCGCGCCGGGGAGACCAAGTAA |