© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05975 |
| Gene name | |
| Location | scaffold_07:289683..290786 |
| Strand | - |
| Gene length (bp) | 1103 |
| Transcript length (bp) | 1038 |
| Coding sequence length (bp) | 1038 |
| Protein length (aa) | 346 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01398 | JAB | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 6.4E-29 | 49 | 157 |
| PF18323 | CSN5_C | Cop9 signalosome subunit 5 C-terminal domain | 4.2E-20 | 250 | 340 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0070122 | obsolete isopeptidase activity | Yes |
| GO:0140492 | metal-dependent deubiquitinase activity | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0019783 | ubiquitin-like protein peptidase activity | No |
| GO:0008237 | metallopeptidase activity | No |
| GO:0008233 | peptidase activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0101005 | deubiquitinase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0005488 | binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear export signal | 0.427 | 0.6528 | 0.0072 | 0.0739 | 0.114 | 0.0124 | 0.15 | 0.3735 | 0.0332 | 0.0319 |
| Orthofinder run ID | 4 |
| Orthogroup | 5481 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05975 MEASMLKTWEIDNDIRLVDPKRDALYAYDEAAQKSIANARPWTKDPTYFRSVRISAVALIKMTMHARSGGDVEVM GLMQGYTEDDAFIVTDAFRLPVEGTETRVNAQEDSNEYIVEYLDLCRAQGRKENVVGWYHSHPGYGCWLSGIDVE TESLQQYQDPFVAVVIDPDRTISAGKVDIGAFRTYPASYEPPVDTWSRPDGVQTVPMAKAAEFGAHANRYYSLEV SHFKSTLDARLLELLWHKYWVQTLSQSPLLTNRDYGSRLMVDLSSKMKEAATALTRTRATPSSLLGALGSGTGAS VVNGKGGDKAIDKLADDTNSIATNERSGLAADEIKAKLFNNLGSR* |
| Coding | >Ophcf2|05975 ATGGAGGCCTCGATGCTCAAGACCTGGGAGATTGACAACGATATTCGCCTTGTTGATCCTAAGCGCGATGCTCTA TACGCGTACGACGAGGCCGCTCAGAAGAGCATCGCCAACGCCCGTCCCTGGACAAAGGACCCAACCTACTTCCGC AGCGTACGCATCAGCGCCGTCGCCCTCATAAAAATGACGATGCACGCCCGCTCTGGTGGCGACGTCGAAGTCATG GGCCTCATGCAGGGATACACCGAGGACGACGCCTTCATCGTGACCGACGCCTTTCGTCTCCCCGTCGAAGGCACA GAGACGAGGGTCAACGCCCAAGAAGACAGCAACGAGTACATCGTCGAGTATCTGGACCTTTGCCGTGCTCAGGGA CGCAAGGAAAACGTGGTGGGCTGGTATCACAGTCATCCGGGATACGGCTGCTGGCTCAGCGGCATCGACGTCGAG ACCGAGTCCCTTCAGCAGTATCAGGATCCCTTCGTCGCCGTCGTCATCGACCCAGATCGTACCATCAGCGCGGGA AAGGTCGACATCGGCGCCTTTCGCACCTACCCGGCCTCGTACGAGCCTCCGGTCGACACGTGGTCCCGTCCGGAC GGAGTGCAGACCGTACCCATGGCCAAGGCGGCCGAGTTCGGCGCCCACGCCAACCGCTACTACAGCCTCGAGGTG TCGCACTTCAAGAGCACGCTCGACGCCCGGCTTCTCGAGCTGCTGTGGCACAAGTACTGGGTGCAGACGCTGAGC CAAAGCCCGCTGCTCACTAACCGCGACTACGGCAGCAGGCTGATGGTCGACCTGAGCTCCAAGATGAAGGAGGCG GCGACGGCGCTGACTCGGACTCGGGCCACGCCGAGCTCGCTGCTGGGCGCGCTGGGTTCCGGCACCGGGGCCTCC GTCGTCAACGGCAAGGGCGGTGACAAGGCCATTGATAAGCTCGCCGACGATACCAACTCGATTGCGACCAACGAG CGGTCCGGTCTGGCGGCTGACGAGATCAAGGCCAAGCTCTTTAACAACTTGGGCTCCCGGTAG |
| Transcript | >Ophcf2|05975 ATGGAGGCCTCGATGCTCAAGACCTGGGAGATTGACAACGATATTCGCCTTGTTGATCCTAAGCGCGATGCTCTA TACGCGTACGACGAGGCCGCTCAGAAGAGCATCGCCAACGCCCGTCCCTGGACAAAGGACCCAACCTACTTCCGC AGCGTACGCATCAGCGCCGTCGCCCTCATAAAAATGACGATGCACGCCCGCTCTGGTGGCGACGTCGAAGTCATG GGCCTCATGCAGGGATACACCGAGGACGACGCCTTCATCGTGACCGACGCCTTTCGTCTCCCCGTCGAAGGCACA GAGACGAGGGTCAACGCCCAAGAAGACAGCAACGAGTACATCGTCGAGTATCTGGACCTTTGCCGTGCTCAGGGA CGCAAGGAAAACGTGGTGGGCTGGTATCACAGTCATCCGGGATACGGCTGCTGGCTCAGCGGCATCGACGTCGAG ACCGAGTCCCTTCAGCAGTATCAGGATCCCTTCGTCGCCGTCGTCATCGACCCAGATCGTACCATCAGCGCGGGA AAGGTCGACATCGGCGCCTTTCGCACCTACCCGGCCTCGTACGAGCCTCCGGTCGACACGTGGTCCCGTCCGGAC GGAGTGCAGACCGTACCCATGGCCAAGGCGGCCGAGTTCGGCGCCCACGCCAACCGCTACTACAGCCTCGAGGTG TCGCACTTCAAGAGCACGCTCGACGCCCGGCTTCTCGAGCTGCTGTGGCACAAGTACTGGGTGCAGACGCTGAGC CAAAGCCCGCTGCTCACTAACCGCGACTACGGCAGCAGGCTGATGGTCGACCTGAGCTCCAAGATGAAGGAGGCG GCGACGGCGCTGACTCGGACTCGGGCCACGCCGAGCTCGCTGCTGGGCGCGCTGGGTTCCGGCACCGGGGCCTCC GTCGTCAACGGCAAGGGCGGTGACAAGGCCATTGATAAGCTCGCCGACGATACCAACTCGATTGCGACCAACGAG CGGTCCGGTCTGGCGGCTGACGAGATCAAGGCCAAGCTCTTTAACAACTTGGGCTCCCGGTAG |
| Gene | >Ophcf2|05975 ATGGAGGCCTCGATGCTCAAGACCTGGGGCACGTGTTCCCCTTCAGTGTTTCCCCTTCACCCTTCCACCCTCTCT GACCCCTTTCTCCTACAGAGATTGACAACGATATTCGCCTTGTTGATCCTAAGCGCGATGCTCTATACGCGTACG ACGAGGCCGCTCAGAAGAGCATCGCCAACGCCCGTCCCTGGACAAAGGACCCAACCTACTTCCGCAGCGTACGCA TCAGCGCCGTCGCCCTCATAAAAATGACGATGCACGCCCGCTCTGGTGGCGACGTCGAAGTCATGGGCCTCATGC AGGGATACACCGAGGACGACGCCTTCATCGTGACCGACGCCTTTCGTCTCCCCGTCGAAGGCACAGAGACGAGGG TCAACGCCCAAGAAGACAGCAACGAGTACATCGTCGAGTATCTGGACCTTTGCCGTGCTCAGGGACGCAAGGAAA ACGTGGTGGGCTGGTATCACAGTCATCCGGGATACGGCTGCTGGCTCAGCGGCATCGACGTCGAGACCGAGTCCC TTCAGCAGTATCAGGATCCCTTCGTCGCCGTCGTCATCGACCCAGATCGTACCATCAGCGCGGGAAAGGTCGACA TCGGCGCCTTTCGCACCTACCCGGCCTCGTACGAGCCTCCGGTCGACACGTGGTCCCGTCCGGACGGAGTGCAGA CCGTACCCATGGCCAAGGCGGCCGAGTTCGGCGCCCACGCCAACCGCTACTACAGCCTCGAGGTGTCGCACTTCA AGAGCACGCTCGACGCCCGGCTTCTCGAGCTGCTGTGGCACAAGTACTGGGTGCAGACGCTGAGCCAAAGCCCGC TGCTCACTAACCGCGACTACGGCAGCAGGCTGATGGTCGACCTGAGCTCCAAGATGAAGGAGGCGGCGACGGCGC TGACTCGGACTCGGGCCACGCCGAGCTCGCTGCTGGGCGCGCTGGGTTCCGGCACCGGGGCCTCCGTCGTCAACG GCAAGGGCGGTGACAAGGCCATTGATAAGCTCGCCGACGATACCAACTCGATTGCGACCAACGAGCGGTCCGGTC TGGCGGCTGACGAGATCAAGGCCAAGCTCTTTAACAACTTGGGCTCCCGGTAG |