© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05933 |
| Gene name | |
| Location | scaffold_07:170736..171444 |
| Strand | + |
| Gene length (bp) | 708 |
| Transcript length (bp) | 585 |
| Coding sequence length (bp) | 585 |
| Protein length (aa) | 195 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04117 | Mpv17_PMP22 | Mpv17 / PMP22 family | 9.2E-20 | 127 | 188 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 107 | 129 | 22 |
| 2 | 144 | 166 | 22 |
| 3 | 173 | 192 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 24.74 | 9.03 | 40.46 |
| Alive | In ants, during behavior modification | 64.44 | 27.68 | 101.20 |
| Dead | In ants, recently dead | 51.70 | 23.68 | 79.72 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.318191 | no |
| Dead | Fungus | 0.003907 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05933 MPSPILTATLQAAGLSMASNLMAQFLEAYQNQHAFVPDHRQLCRFLALTLIITPPNYMWQQFLERCFPSHPRPST PTTTFELKTAEEAAPPPTARPLSLFNTATKWFVDCITMGALANTVAFLVLMGLLKGQPALRIWDNVRSETIPIII AGYKIWPLASVISFSFVPVHRRVVFLSFVGLLWGIYMSLIAARV* |
| Coding | >Ophcf2|05933 ATGCCCTCTCCCATTCTGACGGCCACCCTCCAAGCCGCGGGCCTGTCCATGGCCTCGAACCTGATGGCCCAGTTC CTCGAAGCCTATCAGAATCAGCACGCCTTTGTCCCAGATCATCGTCAGCTATGCCGCTTCCTCGCCCTCACCCTC ATCATCACGCCACCCAACTACATGTGGCAGCAATTTCTAGAGCGATGTTTCCCCTCGCATCCGCGTCCTTCAACC CCGACCACGACCTTCGAGCTCAAGACGGCTGAAGAGGCCGCGCCGCCGCCAACAGCCCGGCCGCTGAGCCTCTTC AATACCGCTACCAAGTGGTTCGTCGACTGCATTACAATGGGCGCTCTGGCCAATACCGTTGCCTTCTTGGTGCTC ATGGGCTTGCTCAAGGGTCAACCTGCGCTGCGCATCTGGGATAACGTCCGCTCAGAAACGATACCCATCATCATC GCCGGTTACAAGATCTGGCCGCTGGCTTCCGTCATCAGCTTCTCCTTTGTGCCCGTCCATCGGCGAGTCGTCTTC CTTAGCTTCGTCGGCCTGCTGTGGGGGATTTACATGAGTCTCATCGCCGCGCGTGTCTAG |
| Transcript | >Ophcf2|05933 ATGCCCTCTCCCATTCTGACGGCCACCCTCCAAGCCGCGGGCCTGTCCATGGCCTCGAACCTGATGGCCCAGTTC CTCGAAGCCTATCAGAATCAGCACGCCTTTGTCCCAGATCATCGTCAGCTATGCCGCTTCCTCGCCCTCACCCTC ATCATCACGCCACCCAACTACATGTGGCAGCAATTTCTAGAGCGATGTTTCCCCTCGCATCCGCGTCCTTCAACC CCGACCACGACCTTCGAGCTCAAGACGGCTGAAGAGGCCGCGCCGCCGCCAACAGCCCGGCCGCTGAGCCTCTTC AATACCGCTACCAAGTGGTTCGTCGACTGCATTACAATGGGCGCTCTGGCCAATACCGTTGCCTTCTTGGTGCTC ATGGGCTTGCTCAAGGGTCAACCTGCGCTGCGCATCTGGGATAACGTCCGCTCAGAAACGATACCCATCATCATC GCCGGTTACAAGATCTGGCCGCTGGCTTCCGTCATCAGCTTCTCCTTTGTGCCCGTCCATCGGCGAGTCGTCTTC CTTAGCTTCGTCGGCCTGCTGTGGGGGATTTACATGAGTCTCATCGCCGCGCGTGTCTAG |
| Gene | >Ophcf2|05933 ATGCCCTCTCCCATTCTGACGGCCACCCTCCAAGCCGCGGGCCTGTCCATGGCCTCGAACCTGATGGCCCAGTTC CTCGAAGCCTATCAGAATCAGGTACGACGAGCATCGTAATTGCTCCTCCTCTCCTCCTCCGCCTCCTCTCCCTCC CGCTCACCGCGTCGCAGCACGCCTTTGTCCCAGATCATCGTCAGCTATGCCGCTTCCTCGCCCTCACCCTCATCA TCACGCCACCCAACTACATGTGGCAGCAATTTCTAGAGCGATGTTTCCCCTCGCATCCGCGTCCTTCAACCCCGA CCACGACCTTCGAGCTCAAGACGGCTGAAGAGGCCGCGCCGCCGCCAACAGCCCGGCCGCTGAGCCTCTTCAATA CCGCTACCAAGTGGTTCGTCGACTGCATTACAATGGGCGCTCTGGCCAATACCGTTGCCTTCTTGGTGCTCATGG GCTTGCTCAAGGGTCAACCTGCGCTGCGCATCTGGGATAACGTCCGCTCAGTGCGTCAGAGTCTCCATCAATGTT GAAGCTTCATGGCTGACCATCTAGCAGGAAACGATACCCATCATCATCGCCGGTTACAAGATCTGGCCGCTGGCT TCCGTCATCAGCTTCTCCTTTGTGCCCGTCCATCGGCGAGTCGTCTTCCTTAGCTTCGTCGGCCTGCTGTGGGGG ATTTACATGAGTCTCATCGCCGCGCGTGTCTAG |