Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|05933
Gene name
Location	scaffold_07:170736..171444
Strand	+
Gene length (bp)	708
Transcript length (bp)	585
Coding sequence length (bp)	585
Protein length (aa)	195

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04117	Mpv17_PMP22	Mpv17 / PMP22 family	9.2E-20	127	188

GO

GO Term	Description	Terminal node
GO:0016021	integral component of membrane	Yes
GO:0005575	cellular_component	No
GO:0031224	intrinsic component of membrane	No
GO:0110165	cellular anatomical entity	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 19	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	107	129	22
2	144	166	22
3	173	192	19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|05933 MPSPILTATLQAAGLSMASNLMAQFLEAYQNQHAFVPDHRQLCRFLALTLIITPPNYMWQQFLERCFPSHPRPST PTTTFELKTAEEAAPPPTARPLSLFNTATKWFVDCITMGALANTVAFLVLMGLLKGQPALRIWDNVRSETIPIII AGYKIWPLASVISFSFVPVHRRVVFLSFVGLLWGIYMSLIAARV*
Coding	>Ophcf2\|05933 ATGCCCTCTCCCATTCTGACGGCCACCCTCCAAGCCGCGGGCCTGTCCATGGCCTCGAACCTGATGGCCCAGTTC CTCGAAGCCTATCAGAATCAGCACGCCTTTGTCCCAGATCATCGTCAGCTATGCCGCTTCCTCGCCCTCACCCTC ATCATCACGCCACCCAACTACATGTGGCAGCAATTTCTAGAGCGATGTTTCCCCTCGCATCCGCGTCCTTCAACC CCGACCACGACCTTCGAGCTCAAGACGGCTGAAGAGGCCGCGCCGCCGCCAACAGCCCGGCCGCTGAGCCTCTTC AATACCGCTACCAAGTGGTTCGTCGACTGCATTACAATGGGCGCTCTGGCCAATACCGTTGCCTTCTTGGTGCTC ATGGGCTTGCTCAAGGGTCAACCTGCGCTGCGCATCTGGGATAACGTCCGCTCAGAAACGATACCCATCATCATC GCCGGTTACAAGATCTGGCCGCTGGCTTCCGTCATCAGCTTCTCCTTTGTGCCCGTCCATCGGCGAGTCGTCTTC CTTAGCTTCGTCGGCCTGCTGTGGGGGATTTACATGAGTCTCATCGCCGCGCGTGTCTAG
Transcript	>Ophcf2\|05933 ATGCCCTCTCCCATTCTGACGGCCACCCTCCAAGCCGCGGGCCTGTCCATGGCCTCGAACCTGATGGCCCAGTTC CTCGAAGCCTATCAGAATCAGCACGCCTTTGTCCCAGATCATCGTCAGCTATGCCGCTTCCTCGCCCTCACCCTC ATCATCACGCCACCCAACTACATGTGGCAGCAATTTCTAGAGCGATGTTTCCCCTCGCATCCGCGTCCTTCAACC CCGACCACGACCTTCGAGCTCAAGACGGCTGAAGAGGCCGCGCCGCCGCCAACAGCCCGGCCGCTGAGCCTCTTC AATACCGCTACCAAGTGGTTCGTCGACTGCATTACAATGGGCGCTCTGGCCAATACCGTTGCCTTCTTGGTGCTC ATGGGCTTGCTCAAGGGTCAACCTGCGCTGCGCATCTGGGATAACGTCCGCTCAGAAACGATACCCATCATCATC GCCGGTTACAAGATCTGGCCGCTGGCTTCCGTCATCAGCTTCTCCTTTGTGCCCGTCCATCGGCGAGTCGTCTTC CTTAGCTTCGTCGGCCTGCTGTGGGGGATTTACATGAGTCTCATCGCCGCGCGTGTCTAG
Gene	>Ophcf2\|05933 ATGCCCTCTCCCATTCTGACGGCCACCCTCCAAGCCGCGGGCCTGTCCATGGCCTCGAACCTGATGGCCCAGTTC CTCGAAGCCTATCAGAATCAGGTACGACGAGCATCGTAATTGCTCCTCCTCTCCTCCTCCGCCTCCTCTCCCTCC CGCTCACCGCGTCGCAGCACGCCTTTGTCCCAGATCATCGTCAGCTATGCCGCTTCCTCGCCCTCACCCTCATCA TCACGCCACCCAACTACATGTGGCAGCAATTTCTAGAGCGATGTTTCCCCTCGCATCCGCGTCCTTCAACCCCGA CCACGACCTTCGAGCTCAAGACGGCTGAAGAGGCCGCGCCGCCGCCAACAGCCCGGCCGCTGAGCCTCTTCAATA CCGCTACCAAGTGGTTCGTCGACTGCATTACAATGGGCGCTCTGGCCAATACCGTTGCCTTCTTGGTGCTCATGG GCTTGCTCAAGGGTCAACCTGCGCTGCGCATCTGGGATAACGTCCGCTCAGTGCGTCAGAGTCTCCATCAATGTT GAAGCTTCATGGCTGACCATCTAGCAGGAAACGATACCCATCATCATCGCCGGTTACAAGATCTGGCCGCTGGCT TCCGTCATCAGCTTCTCCTTTGTGCCCGTCCATCGGCGAGTCGTCTTCCTTAGCTTCGTCGGCCTGCTGTGGGGG ATTTACATGAGTCTCATCGCCGCGCGTGTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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