© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05915 |
| Gene name | |
| Location | scaffold_07:121678..123325 |
| Strand | + |
| Gene length (bp) | 1647 |
| Transcript length (bp) | 1476 |
| Coding sequence length (bp) | 1476 |
| Protein length (aa) | 492 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01494 | FAD_binding_3 | FAD binding domain | 1.2E-23 | 9 | 375 |
| PF00890 | FAD_binding_2 | FAD binding domain | 7.8E-06 | 11 | 41 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 1.9E-05 | 13 | 42 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0071949 | FAD binding | Yes |
| GO:0000166 | nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0050660 | flavin adenine dinucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 394 | 416 | 22 |
| 3 | 451 | 482 | 31 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 99.67 | 56.55 | 142.80 |
| Alive | In ants, during behavior modification | 93.76 | 53.04 | 134.48 |
| Dead | In ants, recently dead | 78.21 | 44.82 | 111.60 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.792717 | no |
| Alive | Dead | 0.291041 | no |
| Dead | Fungus | 0.210301 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05915 MELKTTSRLRVIIVGAGIGGLTAALALNRAGIDFIIVEKHASVLEPMGSSITLTPGSQRILHQLGILNKIKTLSR PYSRDVEVRGPNGQVLSQVSLSSFAIMHGEGIIILQRDLLIRTLYEALPAESEFFLGRSVVSVEHEAGGVRVHLS DGLSETGHLVVGSDGVRGVVRGAMWKHADAMSPGLITRDDGEAVWCSWRCLWATCAEDERVTNDVIMSSHDNRSC TTVLSPLGSLTLGVMVKTGSAGRRSNRLPTYKAEETEKMAASVAHLPLNESLTFGHLWAKKLRGGMTDIEVGVLN RWHYGRIVLVGDTAHSITPAMTSGANLCMESVVELVNALHQAVVDAGNQVPTGTDLERALSRYQERQLPRAMTVC RLSMLYDRLHAWDATWMRLWSLYLARWLNPLLVPLFLGYIFRGSPLLDFVPVEGWPRGTWSWVHGHEEMERGNWR WAVGGVAVVVLIVLGWALGVVGGEFALILLLFRRLWLFSWG* |
| Coding | >Ophcf2|05915 ATGGAACTCAAAACTACCAGCCGACTTCGTGTCATCATCGTGGGAGCCGGCATCGGCGGCCTCACCGCGGCACTC GCACTGAATCGGGCCGGCATTGACTTTATCATCGTTGAGAAGCACGCGTCGGTGCTCGAGCCGATGGGCTCCTCC ATCACCTTGACTCCCGGATCGCAGAGGATCCTGCATCAGCTGGGAATCCTGAACAAGATCAAGACACTCTCGCGC CCCTATTCCCGAGACGTTGAGGTTCGAGGACCAAACGGTCAGGTGCTGTCTCAAGTCTCCTTGTCGAGCTTTGCC ATCATGCATGGAGAAGGCATCATAATTCTGCAGCGTGATTTGCTCATCAGAACGCTGTACGAGGCGCTACCCGCC GAATCCGAGTTTTTCTTGGGCAGGTCGGTTGTGTCAGTCGAGCACGAAGCAGGAGGCGTCCGCGTTCATCTCTCG GACGGACTCTCGGAGACGGGTCATCTGGTGGTGGGCTCCGACGGTGTCAGGGGCGTCGTCCGGGGCGCCATGTGG AAACACGCCGATGCCATGTCTCCGGGACTCATCACTCGAGATGATGGAGAAGCGGTGTGGTGCAGTTGGAGGTGT CTCTGGGCCACTTGCGCGGAAGACGAACGGGTGACAAACGACGTCATCATGAGTAGCCATGACAACCGGTCGTGC ACAACCGTCCTCTCCCCCCTGGGAAGTCTGACACTGGGCGTAATGGTCAAGACGGGCTCGGCCGGACGACGAAGT AATCGGCTGCCTACATACAAGGCCGAGGAGACGGAGAAGATGGCGGCGTCGGTTGCACATCTGCCTCTCAACGAG AGCCTGACGTTTGGCCATCTCTGGGCTAAGAAGCTTCGAGGAGGCATGACGGATATCGAAGTGGGCGTCTTGAAC CGCTGGCATTACGGACGCATCGTCCTCGTCGGCGATACAGCCCACAGCATAACGCCAGCCATGACATCTGGCGCC AACTTGTGCATGGAAAGCGTCGTCGAGCTCGTCAACGCCCTTCACCAGGCCGTCGTCGATGCAGGGAACCAGGTG CCGACCGGGACCGATCTCGAGAGGGCGCTCAGCCGATACCAGGAACGTCAGCTCCCGCGTGCCATGACGGTGTGC CGCCTGTCGATGCTGTACGACCGGCTGCACGCGTGGGACGCGACGTGGATGAGGCTATGGTCGCTTTACCTCGCT CGCTGGCTGAACCCGCTGCTGGTTCCGCTCTTCCTGGGCTACATCTTCCGTGGGAGTCCGCTGTTGGACTTTGTG CCTGTCGAGGGCTGGCCGAGGGGGACCTGGTCTTGGGTTCATGGCCACGAGGAGATGGAGAGGGGAAATTGGCGG TGGGCTGTTGGGGGGGTTGCGGTGGTTGTGCTTATCGTTCTCGGGTGGGCTTTGGGGGTTGTTGGGGGGGAGTTT GCCCTCATCTTGTTGCTATTTCGACGGCTATGGCTGTTTTCGTGGGGGTGA |
| Transcript | >Ophcf2|05915 ATGGAACTCAAAACTACCAGCCGACTTCGTGTCATCATCGTGGGAGCCGGCATCGGCGGCCTCACCGCGGCACTC GCACTGAATCGGGCCGGCATTGACTTTATCATCGTTGAGAAGCACGCGTCGGTGCTCGAGCCGATGGGCTCCTCC ATCACCTTGACTCCCGGATCGCAGAGGATCCTGCATCAGCTGGGAATCCTGAACAAGATCAAGACACTCTCGCGC CCCTATTCCCGAGACGTTGAGGTTCGAGGACCAAACGGTCAGGTGCTGTCTCAAGTCTCCTTGTCGAGCTTTGCC ATCATGCATGGAGAAGGCATCATAATTCTGCAGCGTGATTTGCTCATCAGAACGCTGTACGAGGCGCTACCCGCC GAATCCGAGTTTTTCTTGGGCAGGTCGGTTGTGTCAGTCGAGCACGAAGCAGGAGGCGTCCGCGTTCATCTCTCG GACGGACTCTCGGAGACGGGTCATCTGGTGGTGGGCTCCGACGGTGTCAGGGGCGTCGTCCGGGGCGCCATGTGG AAACACGCCGATGCCATGTCTCCGGGACTCATCACTCGAGATGATGGAGAAGCGGTGTGGTGCAGTTGGAGGTGT CTCTGGGCCACTTGCGCGGAAGACGAACGGGTGACAAACGACGTCATCATGAGTAGCCATGACAACCGGTCGTGC ACAACCGTCCTCTCCCCCCTGGGAAGTCTGACACTGGGCGTAATGGTCAAGACGGGCTCGGCCGGACGACGAAGT AATCGGCTGCCTACATACAAGGCCGAGGAGACGGAGAAGATGGCGGCGTCGGTTGCACATCTGCCTCTCAACGAG AGCCTGACGTTTGGCCATCTCTGGGCTAAGAAGCTTCGAGGAGGCATGACGGATATCGAAGTGGGCGTCTTGAAC CGCTGGCATTACGGACGCATCGTCCTCGTCGGCGATACAGCCCACAGCATAACGCCAGCCATGACATCTGGCGCC AACTTGTGCATGGAAAGCGTCGTCGAGCTCGTCAACGCCCTTCACCAGGCCGTCGTCGATGCAGGGAACCAGGTG CCGACCGGGACCGATCTCGAGAGGGCGCTCAGCCGATACCAGGAACGTCAGCTCCCGCGTGCCATGACGGTGTGC CGCCTGTCGATGCTGTACGACCGGCTGCACGCGTGGGACGCGACGTGGATGAGGCTATGGTCGCTTTACCTCGCT CGCTGGCTGAACCCGCTGCTGGTTCCGCTCTTCCTGGGCTACATCTTCCGTGGGAGTCCGCTGTTGGACTTTGTG CCTGTCGAGGGCTGGCCGAGGGGGACCTGGTCTTGGGTTCATGGCCACGAGGAGATGGAGAGGGGAAATTGGCGG TGGGCTGTTGGGGGGGTTGCGGTGGTTGTGCTTATCGTTCTCGGGTGGGCTTTGGGGGTTGTTGGGGGGGAGTTT GCCCTCATCTTGTTGCTATTTCGACGGCTATGGCTGTTTTCGTGGGGGTGA |
| Gene | >Ophcf2|05915 ATGGAACTCAAAACTACCAGCCGACTTCGTGTCATCATCGTGGGAGCCGGCATCGGCGGCCTCACCGCGGCACTC GCACTGAATCGGGCCGGCATTGACTTTATCATCGTTGAGAAGCACGCGTCGGTGCTCGAGCCGATGGGCTCCTCC ATCACCTTGACTCCCGGATCGCAGAGGATCCTGCATCAGCTGGGAATCCTGAACAAGATCAAGACACTCTCGCGC CCCTATTCCCGAGACGTTGAGGTTCGAGGACCAAACGGTCAGGTGCTGTCTCAAGTCTCCTTGTCGAGCTTTGCC ATCATGTGAGAGCGGGCCTTACCCACCCCAAAATCAGCGGGTGCAATCTCTTTAACAAGGTTGGCAAAGGCATGG AGAAGGCATCATAATTCTGCAGCGTGATTTGCTCATCAGAACGCTGTACGAGGCGCTACCCGCCGAATCCGAGTT TTTCTTGGGCAGGTCGGTTGTGTCAGTCGAGCACGAAGCAGGAGGCGTCCGCGTTCATCTCTCGGACGGACTCTC GGAGACGGGTCATCTGGTGGTGGGCTCCGACGGTGTCAGGGGCGTCGTCCGGGGCGCCATGTGGAAACACGCCGA TGCCATGTCTCCGGGACTCATCACTCGAGATGATGGAGAAGGTGAGCGGCCACTTTGGTAGTTGTTGACGCCTGC TCACAGTTTTGCAGCGGTGTGGTGCAGTTGGAGGTGTCTCTGGGCCACTTGCGCGGAAGACGAACGGGTGACAAA CGACGTCATCATGAGTAGCCATGACAACCGGTCGTGCACAACCGTCCTCTCCCCCCTGGGAAGTCTGACACTGGG CGTAATGGTCAAGACGGGCTCGGCCGGACGACGAAGTAATCGGCTGCCTACATACAAGGCCGAGGAGACGGAGAA GATGGCGGCGTCGGTTGCACATCTGCCTCTCAACGAGAGCCTGACGTTTGGCCATCTCTGGGCTAAGAAGCTTCG AGGAGGCATGACGGATATCGAAGTGGGCGTCTTGAACCGCTGGCATTACGGACGCATCGTCCTCGTCGGCGATAC AGCCCACAGCGTGAGTTGCGAAAACAAGAAGTTGTACTTGGTTGCATCAGCATCTGACGGGCTGAGCAGATAACG CCAGCCATGACATCTGGCGCCAACTTGTGCATGGAAAGCGTCGTCGAGCTCGTCAACGCCCTTCACCAGGCCGTC GTCGATGCAGGGAACCAGGTGCCGACCGGGACCGATCTCGAGAGGGCGCTCAGCCGATACCAGGAACGTCAGCTC CCGCGTGCCATGACGGTGTGCCGCCTGTCGATGCTGTACGACCGGCTGCACGCGTGGGACGCGACGTGGATGAGG CTATGGTCGCTTTACCTCGCTCGCTGGCTGAACCCGCTGCTGGTTCCGCTCTTCCTGGGCTACATCTTCCGTGGG AGTCCGCTGTTGGACTTTGTGCCTGTCGAGGGCTGGCCGAGGGGGACCTGGTCTTGGGTTCATGGCCACGAGGAG ATGGAGAGGGGAAATTGGCGGTGGGCTGTTGGGGGGGTTGCGGTGGTTGTGCTTATCGTTCTCGGGTGGGCTTTG GGGGTTGTTGGGGGGGAGTTTGCCCTCATCTTGTTGCTATTTCGACGGCTATGGCTGTTTTCGTGGGGGTGA |