Protein ID | Ophcf2|05901 |
Gene name | |
Location | scaffold_07:83045..84050 |
Strand | + |
Gene length (bp) | 1005 |
Transcript length (bp) | 1005 |
Coding sequence length (bp) | 1005 |
Protein length (aa) | 335 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04488 | Gly_transf_sug | Glycosyltransferase sugar-binding region containing DXD motif | 2.4E-10 | 102 | 154 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum|Golgi apparatus | Signal peptide|Transmembrane domain | 0.1643 | 0.1298 | 0.1995 | 0.1281 | 0.1031 | 0.0106 | 0.7342 | 0.2457 | 0.836 | 0.0138 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 12 | 31 | 19 |
2 | 281 | 303 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 1803 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|05901 MASLMRWSSRKVGALVFLALLFLLVVHQVSYISDIDFANRLPDPLQVVSQCSAESQHDNTGIPKRIHQMWKTNNV SSYPIEATHTAWKSMFEPADYTVKLWAEADIVNLIAAKYPWLLSTYQGYSQNIQRADVARLVVLHAEGGIYADLD VHPVSLQEISCWRHLGLQALFAPTSGTQGISNHFVMAEKGSAFLQWALHEAKRRGGASSRRIIFPYLQVFWSTGP LMVNSAYRSYVSHMGQADKPVGVAEERYGGSVIRHAAGRSWHKSDGLFLNYVADRVGVGSSYIVIVAPMLFLALA AFLARRHFKAGMLASRDGPLSPIIERIQAFKDRS* |
Coding | >Ophcf2|05901 ATGGCCTCCCTAATGAGATGGAGTTCCCGAAAAGTCGGTGCCCTCGTCTTCCTCGCTCTCCTCTTCCTCCTCGTC GTCCACCAGGTCAGCTACATAAGCGACATCGACTTCGCCAACCGCCTCCCCGACCCCCTACAAGTCGTCAGCCAA TGCTCAGCCGAGAGCCAACATGACAACACCGGGATCCCCAAGCGTATTCATCAGATGTGGAAGACCAACAACGTC TCATCATACCCCATCGAAGCTACCCACACTGCCTGGAAGTCAATGTTCGAACCGGCAGACTACACCGTCAAACTC TGGGCCGAGGCCGACATCGTCAACCTGATAGCGGCAAAGTACCCCTGGCTCCTGTCGACATATCAGGGCTACTCG CAGAACATCCAACGCGCAGACGTCGCCAGGCTCGTCGTCCTTCACGCCGAGGGCGGCATCTACGCTGATCTCGAC GTCCACCCCGTCTCGCTACAAGAAATCTCCTGCTGGCGTCATCTCGGGCTTCAGGCCCTCTTCGCCCCAACTTCG GGAACGCAGGGCATCAGCAACCACTTCGTCATGGCCGAAAAGGGCTCCGCCTTTCTCCAATGGGCCCTACACGAG GCCAAGCGTCGAGGAGGAGCCTCGTCTCGACGAATCATCTTCCCCTACCTTCAGGTCTTTTGGTCGACGGGGCCT CTCATGGTCAACTCGGCTTACCGCTCCTACGTCTCGCATATGGGTCAGGCAGATAAGCCGGTGGGCGTGGCCGAG GAGAGATACGGCGGATCCGTCATCCGGCACGCTGCAGGCCGGTCATGGCACAAGTCTGACGGCCTGTTCCTGAAT TACGTCGCCGACAGGGTTGGAGTGGGCAGTTCCTACATCGTCATTGTCGCCCCTATGCTTTTCCTCGCTCTGGCG GCTTTCCTGGCGAGACGACACTTCAAGGCCGGCATGTTGGCTTCTCGTGATGGGCCGCTGTCTCCCATCATCGAA CGGATACAAGCATTCAAAGATAGATCATGA |
Transcript | >Ophcf2|05901 ATGGCCTCCCTAATGAGATGGAGTTCCCGAAAAGTCGGTGCCCTCGTCTTCCTCGCTCTCCTCTTCCTCCTCGTC GTCCACCAGGTCAGCTACATAAGCGACATCGACTTCGCCAACCGCCTCCCCGACCCCCTACAAGTCGTCAGCCAA TGCTCAGCCGAGAGCCAACATGACAACACCGGGATCCCCAAGCGTATTCATCAGATGTGGAAGACCAACAACGTC TCATCATACCCCATCGAAGCTACCCACACTGCCTGGAAGTCAATGTTCGAACCGGCAGACTACACCGTCAAACTC TGGGCCGAGGCCGACATCGTCAACCTGATAGCGGCAAAGTACCCCTGGCTCCTGTCGACATATCAGGGCTACTCG CAGAACATCCAACGCGCAGACGTCGCCAGGCTCGTCGTCCTTCACGCCGAGGGCGGCATCTACGCTGATCTCGAC GTCCACCCCGTCTCGCTACAAGAAATCTCCTGCTGGCGTCATCTCGGGCTTCAGGCCCTCTTCGCCCCAACTTCG GGAACGCAGGGCATCAGCAACCACTTCGTCATGGCCGAAAAGGGCTCCGCCTTTCTCCAATGGGCCCTACACGAG GCCAAGCGTCGAGGAGGAGCCTCGTCTCGACGAATCATCTTCCCCTACCTTCAGGTCTTTTGGTCGACGGGGCCT CTCATGGTCAACTCGGCTTACCGCTCCTACGTCTCGCATATGGGTCAGGCAGATAAGCCGGTGGGCGTGGCCGAG GAGAGATACGGCGGATCCGTCATCCGGCACGCTGCAGGCCGGTCATGGCACAAGTCTGACGGCCTGTTCCTGAAT TACGTCGCCGACAGGGTTGGAGTGGGCAGTTCCTACATCGTCATTGTCGCCCCTATGCTTTTCCTCGCTCTGGCG GCTTTCCTGGCGAGACGACACTTCAAGGCCGGCATGTTGGCTTCTCGTGATGGGCCGCTGTCTCCCATCATCGAA CGGATACAAGCATTCAAAGATAGATCATGA |
Gene | >Ophcf2|05901 ATGGCCTCCCTAATGAGATGGAGTTCCCGAAAAGTCGGTGCCCTCGTCTTCCTCGCTCTCCTCTTCCTCCTCGTC GTCCACCAGGTCAGCTACATAAGCGACATCGACTTCGCCAACCGCCTCCCCGACCCCCTACAAGTCGTCAGCCAA TGCTCAGCCGAGAGCCAACATGACAACACCGGGATCCCCAAGCGTATTCATCAGATGTGGAAGACCAACAACGTC TCATCATACCCCATCGAAGCTACCCACACTGCCTGGAAGTCAATGTTCGAACCGGCAGACTACACCGTCAAACTC TGGGCCGAGGCCGACATCGTCAACCTGATAGCGGCAAAGTACCCCTGGCTCCTGTCGACATATCAGGGCTACTCG CAGAACATCCAACGCGCAGACGTCGCCAGGCTCGTCGTCCTTCACGCCGAGGGCGGCATCTACGCTGATCTCGAC GTCCACCCCGTCTCGCTACAAGAAATCTCCTGCTGGCGTCATCTCGGGCTTCAGGCCCTCTTCGCCCCAACTTCG GGAACGCAGGGCATCAGCAACCACTTCGTCATGGCCGAAAAGGGCTCCGCCTTTCTCCAATGGGCCCTACACGAG GCCAAGCGTCGAGGAGGAGCCTCGTCTCGACGAATCATCTTCCCCTACCTTCAGGTCTTTTGGTCGACGGGGCCT CTCATGGTCAACTCGGCTTACCGCTCCTACGTCTCGCATATGGGTCAGGCAGATAAGCCGGTGGGCGTGGCCGAG GAGAGATACGGCGGATCCGTCATCCGGCACGCTGCAGGCCGGTCATGGCACAAGTCTGACGGCCTGTTCCTGAAT TACGTCGCCGACAGGGTTGGAGTGGGCAGTTCCTACATCGTCATTGTCGCCCCTATGCTTTTCCTCGCTCTGGCG GCTTTCCTGGCGAGACGACACTTCAAGGCCGGCATGTTGGCTTCTCGTGATGGGCCGCTGTCTCCCATCATCGAA CGGATACAAGCATTCAAAGATAGATCATGA |