Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05873
Gene name
Locationscaffold_06:2483337..2483973
Strand-
Gene length (bp)636
Transcript length (bp)531
Coding sequence length (bp)531
Protein length (aa) 177

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02466 Tim17 Tim17/Tim22/Tim23/Pmp24 family 3.4E-39 35 162

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 54 0.5

Transmembrane Domains

Domain # Start End Length
1 40 62 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05873
MNSSPLGTPMSGNALQANPSQDPSVRAVQAAMESCLGKSIMSGVMGFGMGGLFGMFMASMSYDTPFGSPITNAAG
QNLSDMPLRKQLKLGLKDMGSRSYSMAKNFGKVGALFAGIECGIEGLRAKNDLGNGIAAGCLTGGILAKKAGPQA
VAGGCVAFAAFSAAIDTWMRQPKEDD*
Coding >Ophcf2|05873
ATGAACTCGTCTCCTCTCGGCACGCCGATGAGCGGCAATGCGCTGCAGGCAAACCCCTCCCAGGACCCCAGCGTC
CGCGCCGTCCAAGCGGCGATGGAGTCTTGCTTGGGGAAATCCATCATGTCTGGCGTCATGGGATTCGGAATGGGT
GGTCTCTTCGGCATGTTCATGGCCTCTATGTCATATGACACGCCCTTTGGCAGCCCCATCACCAACGCGGCAGGC
CAGAACCTCTCAGACATGCCCCTGCGGAAGCAACTAAAGCTAGGCCTCAAAGATATGGGCTCGCGATCGTACTCG
ATGGCCAAGAACTTCGGCAAAGTCGGCGCGCTCTTCGCCGGCATCGAGTGCGGCATCGAGGGCCTGCGGGCCAAG
AACGACCTGGGGAATGGCATCGCTGCTGGCTGCCTCACCGGCGGCATCTTGGCTAAGAAGGCTGGGCCGCAGGCT
GTTGCTGGTGGTTGCGTTGCCTTTGCTGCCTTTAGTGCTGCTATTGATACGTGGATGAGGCAGCCCAAGGAGGAT
GACTGA
Transcript >Ophcf2|05873
ATGAACTCGTCTCCTCTCGGCACGCCGATGAGCGGCAATGCGCTGCAGGCAAACCCCTCCCAGGACCCCAGCGTC
CGCGCCGTCCAAGCGGCGATGGAGTCTTGCTTGGGGAAATCCATCATGTCTGGCGTCATGGGATTCGGAATGGGT
GGTCTCTTCGGCATGTTCATGGCCTCTATGTCATATGACACGCCCTTTGGCAGCCCCATCACCAACGCGGCAGGC
CAGAACCTCTCAGACATGCCCCTGCGGAAGCAACTAAAGCTAGGCCTCAAAGATATGGGCTCGCGATCGTACTCG
ATGGCCAAGAACTTCGGCAAAGTCGGCGCGCTCTTCGCCGGCATCGAGTGCGGCATCGAGGGCCTGCGGGCCAAG
AACGACCTGGGGAATGGCATCGCTGCTGGCTGCCTCACCGGCGGCATCTTGGCTAAGAAGGCTGGGCCGCAGGCT
GTTGCTGGTGGTTGCGTTGCCTTTGCTGCCTTTAGTGCTGCTATTGATACGTGGATGAGGCAGCCCAAGGAGGAT
GACTGA
Gene >Ophcf2|05873
ATGAACTCGTCTCCTCTCGGCACGCCGATGAGCGGCAATGCGCTGCAGGCAAACCCCTCCCAGGACCCCAGCGTC
CGCGCCGTACGTCTCGCCGGCTTTCTGCCATCTCCAAGTTGACTGATCCGGTCCAGGTCCAAGCGGCGATGGAGT
CTTGCTTGGGGAAATCCATCATGTCTGGCGTCATGGGATTCGGAATGGGTGGTCTCTTCGGCATGTTCATGGCCT
CTGTACGACGCGTCTCTCCCGTCAGCTTGTCTTGTCCGGATGCTCACAACCGTATAGATGTCATATGACACGCCC
TTTGGCAGCCCCATCACCAACGCGGCAGGCCAGAACCTCTCAGACATGCCCCTGCGGAAGCAACTAAAGCTAGGC
CTCAAAGATATGGGCTCGCGATCGTACTCGATGGCCAAGAACTTCGGCAAAGTCGGCGCGCTCTTCGCCGGCATC
GAGTGCGGCATCGAGGGCCTGCGGGCCAAGAACGACCTGGGGAATGGCATCGCTGCTGGCTGCCTCACCGGCGGC
ATCTTGGCTAAGAAGGCTGGGCCGCAGGCTGTTGCTGGTGGTTGCGTTGCCTTTGCTGCCTTTAGTGCTGCTATT
GATACGTGGATGAGGCAGCCCAAGGAGGATGACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail