© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05864 |
| Gene name | |
| Location | scaffold_06:2466254..2467710 |
| Strand | + |
| Gene length (bp) | 1456 |
| Transcript length (bp) | 1221 |
| Coding sequence length (bp) | 1221 |
| Protein length (aa) | 407 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03151 | TPT | Triose-phosphate Transporter family | 1.6E-25 | 49 | 337 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 48 | 70 | 22 |
| 2 | 77 | 99 | 22 |
| 3 | 114 | 131 | 17 |
| 4 | 136 | 158 | 22 |
| 5 | 173 | 190 | 17 |
| 6 | 197 | 216 | 19 |
| 7 | 231 | 253 | 22 |
| 8 | 266 | 288 | 22 |
| 9 | 292 | 314 | 22 |
| 10 | 321 | 340 | 19 |
| 11 | 366 | 388 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 127.19 | 72.66 | 181.73 |
| Alive | In ants, during behavior modification | 164.60 | 88.97 | 240.23 |
| Dead | In ants, recently dead | 195.11 | 106.66 | 283.56 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.203489 | no |
| Alive | Dead | 0.360820 | no |
| Dead | Fungus | 0.026470 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05864 MAPTSSSSSSADASPVVSQSSTEVFDMGYDEQAIDKGPEPSPSKGLHPALYIANWIFFSNLTILFNKWILDSAGF RYPILLTCWHLVFSVFATQILARTTTLLDSRHKLPMTPRLYLRTICPIGLFYSGSLVCSNLVYLYLSVAFIQMLK SAAPVAVLFASWAWRVADPSLDALVNVLVIVAGVALASFGEIQFSLIGFLYQLGGIVFEAVRIVMIQVMLSGQGL NMDPIVGLYYYAPVCAGMNILVALFTEIPRFKWEDAASVGFFMLLLNALIAFMLNIASVFLIGKTSGLVMTLSGI LKNILLIVVSVIIWRTEITPLQGVGYTIALAGLTYYSVGYDQLAKCSQGAVAWMAASMPPSTSTLQARRLVLTAI FALTGLLVLLVGLQRFDGRTGYSPRVDVGTE* |
| Coding | >Ophcf2|05864 ATGGCTCCGACGTCGTCTTCTTCGTCGTCAGCCGACGCCTCGCCCGTTGTCTCCCAATCATCAACCGAAGTCTTC GACATGGGCTATGACGAGCAAGCAATTGATAAAGGGCCCGAGCCGTCGCCTTCCAAGGGCCTGCATCCCGCGCTA TACATTGCGAATTGGATATTCTTCTCCAACCTCACCATATTGTTTAACAAATGGATTCTCGACTCTGCTGGCTTC AGATACCCCATCCTCCTGACGTGCTGGCATCTCGTCTTCTCCGTCTTCGCTACCCAGATCCTCGCTCGTACGACG ACACTGCTCGACTCGCGCCATAAGCTGCCCATGACGCCCCGTCTCTACCTCCGCACTATCTGCCCCATCGGCCTC TTCTACTCGGGGTCTCTCGTCTGCTCCAACCTCGTGTATCTCTATCTCTCCGTCGCCTTTATCCAGATGCTCAAA TCGGCCGCCCCAGTAGCCGTTCTCTTCGCTTCGTGGGCCTGGCGCGTCGCCGATCCGAGCCTGGACGCTCTGGTC AACGTCCTCGTCATCGTCGCCGGCGTCGCCCTCGCCTCCTTTGGCGAGATACAATTTTCGCTCATCGGCTTCCTC TACCAGCTAGGTGGCATCGTCTTCGAGGCTGTTCGCATTGTCATGATTCAGGTCATGCTCAGCGGCCAGGGCCTC AACATGGACCCCATCGTCGGACTCTACTACTATGCCCCCGTCTGCGCCGGCATGAACATACTCGTCGCGCTCTTC ACCGAGATTCCGCGCTTTAAATGGGAGGACGCGGCTAGCGTTGGCTTCTTCATGCTCCTCCTCAACGCCCTCATC GCCTTTATGCTCAACATCGCTAGTGTATTCCTGATCGGCAAGACGTCAGGCCTCGTCATGACGCTTAGTGGCATC CTAAAGAATATTCTACTCATCGTTGTCTCAGTCATCATCTGGCGCACCGAGATCACTCCCCTCCAAGGCGTCGGC TACACCATCGCCCTAGCCGGCCTCACCTACTACTCCGTAGGCTACGACCAGCTAGCCAAGTGCTCGCAAGGAGCC GTCGCCTGGATGGCAGCCTCGATGCCGCCCTCTACCTCGACGCTACAGGCCCGCAGGCTCGTCCTCACCGCCATC TTCGCCCTCACGGGTCTGTTGGTCCTGCTCGTCGGCCTGCAGCGCTTCGACGGGAGGACTGGGTATTCGCCCAGG GTCGATGTTGGCACCGAGTGA |
| Transcript | >Ophcf2|05864 ATGGCTCCGACGTCGTCTTCTTCGTCGTCAGCCGACGCCTCGCCCGTTGTCTCCCAATCATCAACCGAAGTCTTC GACATGGGCTATGACGAGCAAGCAATTGATAAAGGGCCCGAGCCGTCGCCTTCCAAGGGCCTGCATCCCGCGCTA TACATTGCGAATTGGATATTCTTCTCCAACCTCACCATATTGTTTAACAAATGGATTCTCGACTCTGCTGGCTTC AGATACCCCATCCTCCTGACGTGCTGGCATCTCGTCTTCTCCGTCTTCGCTACCCAGATCCTCGCTCGTACGACG ACACTGCTCGACTCGCGCCATAAGCTGCCCATGACGCCCCGTCTCTACCTCCGCACTATCTGCCCCATCGGCCTC TTCTACTCGGGGTCTCTCGTCTGCTCCAACCTCGTGTATCTCTATCTCTCCGTCGCCTTTATCCAGATGCTCAAA TCGGCCGCCCCAGTAGCCGTTCTCTTCGCTTCGTGGGCCTGGCGCGTCGCCGATCCGAGCCTGGACGCTCTGGTC AACGTCCTCGTCATCGTCGCCGGCGTCGCCCTCGCCTCCTTTGGCGAGATACAATTTTCGCTCATCGGCTTCCTC TACCAGCTAGGTGGCATCGTCTTCGAGGCTGTTCGCATTGTCATGATTCAGGTCATGCTCAGCGGCCAGGGCCTC AACATGGACCCCATCGTCGGACTCTACTACTATGCCCCCGTCTGCGCCGGCATGAACATACTCGTCGCGCTCTTC ACCGAGATTCCGCGCTTTAAATGGGAGGACGCGGCTAGCGTTGGCTTCTTCATGCTCCTCCTCAACGCCCTCATC GCCTTTATGCTCAACATCGCTAGTGTATTCCTGATCGGCAAGACGTCAGGCCTCGTCATGACGCTTAGTGGCATC CTAAAGAATATTCTACTCATCGTTGTCTCAGTCATCATCTGGCGCACCGAGATCACTCCCCTCCAAGGCGTCGGC TACACCATCGCCCTAGCCGGCCTCACCTACTACTCCGTAGGCTACGACCAGCTAGCCAAGTGCTCGCAAGGAGCC GTCGCCTGGATGGCAGCCTCGATGCCGCCCTCTACCTCGACGCTACAGGCCCGCAGGCTCGTCCTCACCGCCATC TTCGCCCTCACGGGTCTGTTGGTCCTGCTCGTCGGCCTGCAGCGCTTCGACGGGAGGACTGGGTATTCGCCCAGG GTCGATGTTGGCACCGAGTGA |
| Gene | >Ophcf2|05864 ATGGCTCCGACGTCGTCTTCTTCGTCGTCAGCCGACGCCTCGCCCGTTGTCTCCCAATCATCAACCGAAGTCTTC GACATGGGCTATGACGAGCAAGCAATTGATAAAGGGCCCGAGCCGTCGCCTTCCAAGGGCCTGCATCCCGCGCTA TACATTGCGTACGACGCTTCGTTTCCTCCACGGTGCGCCGACCTCTTCCGCTGACTCTCTGTCACAGGAATTGGA TATTCTTCTCCAACCTCACCATATTGTTTAACAAATGGATTCTCGACTCTGCTGGCTTCAGTGAGCTCCTCTTCC TCCTCAGAAACCTCCGCAAGCTAACAGATCTCAACAGGATACCGTACGTCGTCTCCCCGAGCTTGGCCGACGGTG AGGCTCTCGCTGACATGCATCGCAGCCATCCTCCTGACGTGCTGGCATCTCGTCTTCTCCGTCTTCGCTACCCAG ATCCTCGCTCGTACGACGACACTGCTCGACTCGCGCCATAAGCTGCCCATGACGCCCCGTCTCTACCTCCGCACT ATCTGCCCCATCGGCCTCTTCTACTCGGGGTCTCTCGTCTGCTCCAACCTCGTGTATCTCTATCTCTCCGTCGCC TTTATCCAGATGCTCAAATCGGCCGCCCCAGTAGCCGTTCTCTTCGCTTCGTGGGCCTGGCGCGTCGCCGATCCG AGCCTGGACGCTCTGGTCAACGTCCTCGTCATCGTCGCCGGCGTCGCCCTCGCCTCCTTTGGCGAGATACAATTT TCGCTCATCGGCTTCCTCTACCAGCTAGGTGGCATCGTCTTCGAGGCTGTTCGCATTGTCATGATTCAGGTCATG CTCAGCGGCCAGGGCCTCAACATGGACCCCATCGTCGGACTCTACTACTATGCCCCCGTCTGCGCCGGCATGAAC ATACTCGTCGCGCTCTTCACCGAGATTCCGCGCTTTAAATGGGAGGACGCGGCTAGCGTTGGCTTCTTCATGCTC CTCCTCAACGCCCTCATCGCCTTTATGCTCAACATCGCTAGTGTATTCCTGGTATGGCTTCACCCACCCGCGCGA TCCCCTCCACATCAAGAGAAGCTAACCGTCGGGGTACCCACAGATCGGCAAGACGTCAGGCCTCGTCATGACGCT TAGTGGCATCCTAAAGAATATTCTACTCATCGTTGTCTCAGTCATCATCTGGCGCACCGAGATCACTCCCCTCCA AGGCGTCGGCTACACCATCGCCCTAGCCGGCCTCACCTACTACTCCGTAGGCTACGACCAGCTAGCCAAGTGCTC GCAAGGAGCCGTCGCCTGGATGGCAGCCTCGATGCCGCCCTCTACCTCGACGCTACAGGCCCGCAGGCTCGTCCT CACCGCCATCTTCGCCCTCACGGGTCTGTTGGTCCTGCTCGTCGGCCTGCAGCGCTTCGACGGGAGGACTGGGTA TTCGCCCAGGGTCGATGTTGGCACCGAGTGA |