Protein ID | Ophcf2|05850 |
Gene name | |
Location | scaffold_06:2432528..2435039 |
Strand | - |
Gene length (bp) | 2511 |
Transcript length (bp) | 2031 |
Coding sequence length (bp) | 2031 |
Protein length (aa) | 677 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF12895 | ANAPC3 | Anaphase-promoting complex, cyclosome, subunit 3 | 3.8E-23 | 15 | 93 |
PF13424 | TPR_12 | Tetratricopeptide repeat | 5.6E-09 | 418 | 486 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 1.5E-02 | 134 | 163 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 1.0E-01 | 459 | 486 |
PF13374 | TPR_10 | Tetratricopeptide repeat | 4.3E-04 | 456 | 485 |
PF13432 | TPR_16 | Tetratricopeptide repeat | 6.1E-05 | 462 | 524 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 57 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|05850 MESFLREWRQDALNKAQYESAIFIGDKLLALTKDDQDAFWLAQVHFATGNYARAQAFLNKQDLIGRNPSCRYLAG HCLIKQNRFDEALNVLGERNPTHLVSNGNKRKAQPRHHGRPRQHDGGHGDAADRRFEAAMCFLRGICYAKQNAFD RAKECYKDAVRIDVQCFEAFQQLMKNSLLSPDEEWQFLESLDFDSIQVKGDVSSSQEAADFTRMLYTTRLSKYRN PAAFETAYDSLSTHYQLTDNADLQLARADLLYTQCRYRDALAVTNAVLFHDKYNFGVFPVHLACLYELEMTNMLF LTAHDAADTHPEEPCTWLAVGIYYLAIDKIPEARRYFSKASMMDAHFGPAWIGFAHTFAAEGEHDQAISAYSTAA RLFMGTHLPQLFLGMQNQALNNMTLADEFLKTAYGLCKTDPLLLNEMGVVKYHQDRPKEAVQYFSAALKMADEID SEPSAWLAARTNLGHAYRRLGHFNRALAEFDEVLRLGGKDAAVFSAKALILMEQNRPGEAVGILHQALAISPQDG IATELLNRALDETALDETRCETDEGLAEFEQRLERSKAEAARRVNGGRGKGKGRERASLEEDEEDGEEEEDDRDE QDDSLMEMTDDEVGSRLWMTSEDYRGMYYEFTMHVKGYLVEIGRPASSSSGSGPGSTTLKSIYLLNTAISQTSEQ L* |
Coding | >Ophcf2|05850 ATGGAGAGCTTCCTGAGGGAGTGGAGGCAAGATGCCCTCAACAAAGCACAGTACGAGTCTGCCATCTTCATCGGC GACAAGCTACTCGCCTTGACCAAGGATGATCAGGACGCGTTCTGGCTGGCCCAGGTTCATTTTGCTACCGGTAAT TACGCCCGTGCTCAGGCCTTCCTCAACAAGCAAGACCTCATCGGGCGCAACCCGTCGTGTCGATACCTGGCCGGC CACTGCCTCATCAAGCAGAACCGGTTCGACGAGGCGCTCAACGTCCTCGGCGAGCGAAACCCGACGCACCTCGTC TCCAACGGAAACAAGCGCAAAGCTCAGCCTCGCCACCACGGTCGACCTAGGCAGCACGACGGTGGTCATGGTGAC GCGGCGGACCGCCGGTTCGAGGCCGCCATGTGCTTCCTCCGCGGCATCTGCTACGCCAAGCAAAACGCCTTCGAC CGGGCTAAAGAGTGCTACAAGGACGCCGTTAGGATCGACGTGCAGTGCTTCGAGGCTTTCCAGCAGCTGATGAAG AACTCGCTCTTGTCGCCGGACGAGGAGTGGCAGTTCCTCGAGAGCCTCGACTTTGACTCCATTCAGGTCAAGGGC GACGTGTCGTCGTCGCAGGAGGCGGCCGACTTCACCAGGATGCTGTACACGACGCGGCTGTCCAAGTACCGCAAC CCAGCCGCGTTCGAGACGGCCTACGACTCGCTGTCGACGCACTACCAGCTGACGGATAATGCGGACCTGCAGCTG GCGCGGGCGGACCTCTTGTACACGCAGTGCAGGTACCGCGATGCGCTGGCGGTGACGAACGCGGTATTGTTTCAC GACAAGTACAACTTCGGCGTGTTCCCGGTGCACCTGGCGTGTCTCTACGAGCTCGAGATGACCAACATGCTGTTC CTGACTGCACACGACGCGGCCGACACACACCCGGAGGAGCCGTGCACGTGGCTGGCTGTGGGCATCTACTACCTG GCCATTGATAAGATCCCCGAGGCTCGAAGGTACTTTAGCAAAGCCAGTATGATGGACGCACACTTTGGACCGGCC TGGATCGGCTTCGCTCACACGTTTGCGGCCGAGGGCGAACACGACCAGGCCATCTCGGCCTACTCGACGGCTGCG CGGCTGTTCATGGGCACACACTTGCCACAGCTGTTCCTGGGGATGCAGAACCAGGCCCTGAACAACATGACGCTG GCGGACGAGTTCCTGAAGACGGCCTACGGGCTGTGCAAGACGGATCCGTTGCTGCTCAACGAGATGGGCGTCGTC AAGTATCACCAGGACCGGCCCAAGGAGGCGGTGCAGTATTTCTCGGCGGCACTCAAGATGGCCGACGAGATTGAC AGCGAGCCGTCGGCCTGGCTGGCGGCGCGGACGAACCTCGGTCACGCGTATCGGCGGCTGGGGCACTTTAACCGG GCGCTGGCCGAGTTTGACGAGGTGCTGCGGTTAGGGGGCAAGGACGCGGCCGTCTTCAGCGCCAAGGCCCTGATC CTGATGGAGCAGAACCGGCCGGGAGAGGCGGTCGGGATCCTGCACCAGGCGCTTGCCATCAGCCCGCAGGACGGC ATCGCGACGGAGCTGCTCAACCGGGCGCTGGACGAGACGGCGCTTGACGAGACGAGGTGCGAGACGGATGAGGGG CTGGCCGAGTTCGAGCAGCGGCTGGAGAGGAGCAAAGCGGAAGCGGCGCGGAGGGTCAACGGCGGCCGCGGTAAG GGGAAGGGAAGGGAGAGGGCATCGCTGGAGGAGGACGAGGAGGATGGAGAGGAAGAAGAGGATGACAGGGATGAG CAGGACGATAGCCTGATGGAGATGACGGACGACGAGGTAGGTAGCCGCTTGTGGATGACGTCCGAGGACTACCGA GGTATGTATTACGAATTTACGATGCATGTGAAGGGTTATCTCGTGGAGATTGGGCGACCGGCTTCGTCCAGCTCT GGGAGCGGTCCAGGCTCAACAACACTCAAGTCCATCTATCTCTTAAATACGGCCATCTCTCAGACTTCAGAACAG CTTTAG |
Transcript | >Ophcf2|05850 ATGGAGAGCTTCCTGAGGGAGTGGAGGCAAGATGCCCTCAACAAAGCACAGTACGAGTCTGCCATCTTCATCGGC GACAAGCTACTCGCCTTGACCAAGGATGATCAGGACGCGTTCTGGCTGGCCCAGGTTCATTTTGCTACCGGTAAT TACGCCCGTGCTCAGGCCTTCCTCAACAAGCAAGACCTCATCGGGCGCAACCCGTCGTGTCGATACCTGGCCGGC CACTGCCTCATCAAGCAGAACCGGTTCGACGAGGCGCTCAACGTCCTCGGCGAGCGAAACCCGACGCACCTCGTC TCCAACGGAAACAAGCGCAAAGCTCAGCCTCGCCACCACGGTCGACCTAGGCAGCACGACGGTGGTCATGGTGAC GCGGCGGACCGCCGGTTCGAGGCCGCCATGTGCTTCCTCCGCGGCATCTGCTACGCCAAGCAAAACGCCTTCGAC CGGGCTAAAGAGTGCTACAAGGACGCCGTTAGGATCGACGTGCAGTGCTTCGAGGCTTTCCAGCAGCTGATGAAG AACTCGCTCTTGTCGCCGGACGAGGAGTGGCAGTTCCTCGAGAGCCTCGACTTTGACTCCATTCAGGTCAAGGGC GACGTGTCGTCGTCGCAGGAGGCGGCCGACTTCACCAGGATGCTGTACACGACGCGGCTGTCCAAGTACCGCAAC CCAGCCGCGTTCGAGACGGCCTACGACTCGCTGTCGACGCACTACCAGCTGACGGATAATGCGGACCTGCAGCTG GCGCGGGCGGACCTCTTGTACACGCAGTGCAGGTACCGCGATGCGCTGGCGGTGACGAACGCGGTATTGTTTCAC GACAAGTACAACTTCGGCGTGTTCCCGGTGCACCTGGCGTGTCTCTACGAGCTCGAGATGACCAACATGCTGTTC CTGACTGCACACGACGCGGCCGACACACACCCGGAGGAGCCGTGCACGTGGCTGGCTGTGGGCATCTACTACCTG GCCATTGATAAGATCCCCGAGGCTCGAAGGTACTTTAGCAAAGCCAGTATGATGGACGCACACTTTGGACCGGCC TGGATCGGCTTCGCTCACACGTTTGCGGCCGAGGGCGAACACGACCAGGCCATCTCGGCCTACTCGACGGCTGCG CGGCTGTTCATGGGCACACACTTGCCACAGCTGTTCCTGGGGATGCAGAACCAGGCCCTGAACAACATGACGCTG GCGGACGAGTTCCTGAAGACGGCCTACGGGCTGTGCAAGACGGATCCGTTGCTGCTCAACGAGATGGGCGTCGTC AAGTATCACCAGGACCGGCCCAAGGAGGCGGTGCAGTATTTCTCGGCGGCACTCAAGATGGCCGACGAGATTGAC AGCGAGCCGTCGGCCTGGCTGGCGGCGCGGACGAACCTCGGTCACGCGTATCGGCGGCTGGGGCACTTTAACCGG GCGCTGGCCGAGTTTGACGAGGTGCTGCGGTTAGGGGGCAAGGACGCGGCCGTCTTCAGCGCCAAGGCCCTGATC CTGATGGAGCAGAACCGGCCGGGAGAGGCGGTCGGGATCCTGCACCAGGCGCTTGCCATCAGCCCGCAGGACGGC ATCGCGACGGAGCTGCTCAACCGGGCGCTGGACGAGACGGCGCTTGACGAGACGAGGTGCGAGACGGATGAGGGG CTGGCCGAGTTCGAGCAGCGGCTGGAGAGGAGCAAAGCGGAAGCGGCGCGGAGGGTCAACGGCGGCCGCGGTAAG GGGAAGGGAAGGGAGAGGGCATCGCTGGAGGAGGACGAGGAGGATGGAGAGGAAGAAGAGGATGACAGGGATGAG CAGGACGATAGCCTGATGGAGATGACGGACGACGAGGTAGGTAGCCGCTTGTGGATGACGTCCGAGGACTACCGA GGTATGTATTACGAATTTACGATGCATGTGAAGGGTTATCTCGTGGAGATTGGGCGACCGGCTTCGTCCAGCTCT GGGAGCGGTCCAGGCTCAACAACACTCAAGTCCATCTATCTCTTAAATACGGCCATCTCTCAGACTTCAGAACAG CTTTAG |
Gene | >Ophcf2|05850 ATGGAGAGCTTCCTGAGGGAGTGGAGGCAAGATGCCCTCAACAAAGCACAGTACGAGTCTGCCATCTTCATCGGC GACAAGCTACTCGCCTTGACCAGTCCGTCCATCTCCATCTCCCTCTCTCTTCATCGAGTTGACCAAGGTCGCAGA GGATGATCAGGACGCGTTCTGGCTGGCCCAGGTTCATTTTGCTACCGGTAATTACGCCCGTGCTCAGGCCTTCCT CAACAAGCAAGACCTCATCGGGCGCAACCCGTCGTGTCGATACCTGGCCGGCCACTGCCTCATCAAGCAGAACCG GTTCGACGAGGCGCTCAACGTCCTCGGCGAGCGAAACCCGACGCACCTCGTCTCCAACGGAAACAAGCGCAAAGC TCAGCCTCGCCACCACGGTCGACCTAGGCAGCACGACGGTGGTCATGGTGACGCGGCGGACCGCCGGTTCGAGGC CGCCATGTGCTTCCTCCGCGGCATCTGCTACGCCAAGCAAAACGCCTTCGACCGGGCTAAAGAGTGCTACAAGGA CGCCGTTAGGATCGACGTGCAGTGCTTCGAGGCTTTCCAGCAGCTGATGAAGAACTCGCTCTTGTCGCCGGACGA GGAGTGGCAGTTCCTCGAGAGCCTCGACTTTGACTCCATTCAGGTCAAGGGCGACGTGTCGTCGTCGCAGGAGGC GGCCGACTTCACCAGGATGCTGTACACGACGCGGCTGTCCAAGTACCGCAACCCAGCCGCGTTCGAGACGGCCTA CGACTCGCTGTCGACGCACTACCAGCTGACGGATAATGCGGACCTGCAGCTGGCGCGGGCGGACCTCTTGTACAC GCAGTGCAGGTACCGCGATGCGCTGGCGGTGACGAACGCGGTATTGTTTCACGACAAGTACAACTTCGGCGTGTT CCCGGTGCACCTGGCGTGTCTCTACGAGCTCGAGATGACCAACATGCTGTTCCTGACTGCACACGACGCGGCCGA CACACACCCGGAGGAGCCGTGCACGTGGCTGGCTGTGGGCATCTACTACCTGGCCATTGATAAGATCCCCGAGGC TCGAAGGTACTTTAGCAAAGCCAGTATGATGGACGCACACTTTGGACCGGCCTGGATCGGCTTCGCTCACACGTT TGCGGCCGAGGGCGAACACGACCAGGCCATCTCGGCCTACTCGACGGCTGCGCGGCTGTTCATGGGCACACACTT GCCACAGCTGTTCCTGGGGATGCAGAACCAGGCCCTGAACAACATGACGCTGGCGGACGAGTTCCTGAAGACGGC CTACGGGCTGTGCAAGACGGATCCGTTGCTGCTCAACGAGATGGGCGTCGTCAAGTATCACCAGGACCGGCCCAA GGAGGCGGTGCAGTATTTCTCGGCGGCACTCAAGATGGCCGACGAGATTGACAGCGAGCCGTCGGCCTGGCTGGC GGCGCGGACGAACCTCGGTCACGCGTATCGGCGGCTGGGGCACTTTAACCGGGCGCTGGCCGAGTTTGACGAGGT GCTGCGGTTAGGGGGCAAGGACGCGGCCGTCTTCAGCGCCAAGGCCCTGATCCTGATGGAGCAGAACCGGCCGGG AGAGGCGGTCGGGATCCTGCACCAGGCGCTTGCCATCAGCCCGCAGGACGGCATCGCGACGGAGCTGCTCAACCG GGCGCTGGACGAGACGGCGCTTGACGAGACGAGGTGCGAGACGGATGAGGGGCTGGCCGAGTTCGAGCAGCGGCT GGAGAGGAGCAAAGCGGAAGCGGCGCGGAGGGTCAACGGCGGCCGCGGTAAGGGGAAGGGAAGGGAGAGGGCATC GCTGGAGGAGGACGAGGAGGATGGAGAGGAAGAAGAGGATGACAGGGATGAGCAGGACGATAGCCTGATGGAGAT GACGGACGACGAGTGAGGCGGTCGTAGGTGTTTGGAGTACGGAGAACCTAGGTCAGTCAGCAGGCAGGATTGGGA AGGGGATCGACTCTTTGAGGAGTCTCATACAGCCCACGGGCAAGACGGCGTGGGTGAGGATGGGTATAGCCGTAT AGGGTAGGTACGCTTGTAGGGTAGGTACGCTTGTAGGGTAGGTACGCTTGTAGGGTAGGTACGCTTGTAGGGTAG GTACGCTTGTAGGGTAGGTAGGTTCGTAGTATTCGTAAGCGGTGGAGGCGAGGAGATGGATTGTGACGACAGCCA TCGAGGAAGTTGTGTATCGTGGAAGACCCAGTTTCGGCAAGCCGCTTGTGGATGACGTCCGAGGACTACCGAGGT ATGTATTACGAATTTACGATGCATGTGAAGGTAAGCATTGGATCAGCCGTCGTCTTATCTGGTAATGGGAGATGC AGTATCTTACGTGTGACAGGGTTATCTCGTGGAGATTGGGCGACCGGGTACGCTCGTTACTCGGGGGCTTCCACC TCAGCTTCCACCTCAGCTTCGTCCAGCTCTGGGAGCGGTCCAGGCTCAACAACACTCAAGTCCATCTATCTCTTA AATACGGCCATCTCTCAGACTTCAGAACAGCTTTAG |