© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05710 |
| Gene name | |
| Location | scaffold_06:2070759..2071592 |
| Strand | - |
| Gene length (bp) | 833 |
| Transcript length (bp) | 765 |
| Coding sequence length (bp) | 765 |
| Protein length (aa) | 255 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03188 | Cytochrom_B561 | Eukaryotic cytochrome b561 | 2.5E-16 | 77 | 206 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1054 | 0.0733 | 0.1109 | 0.1537 | 0.0991 | 0.0115 | 0.5163 | 0.9276 | 0.66 | 0.11 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 44 | 66 | 22 |
| 2 | 71 | 93 | 22 |
| 3 | 114 | 131 | 17 |
| 4 | 146 | 168 | 22 |
| 5 | 188 | 207 | 19 |
| 6 | 212 | 234 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 1434 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05710 MASATGMPARAEAGGPEPSDTEPLLGRPGDVIQRRDTSFPRNLIMGTASLAQLGAVLGLILVWASVFNKPLILFS AHPLLQSLAVFTLIQSVLSLQPTHTAEQKRLGQRVHASLNLVALLLLIAGVTIIEYNKLSSHGPHFHSVHGYLGV IVSIIIIMQYLVGFTMWAVPALYGGEVRARSVWKYHRYSGYVVLLLLLVTVCSATETDYNRNVLHMKLWATVLAS ILVVVGVFPRIQKYKLGLGTASPARDAAR* |
| Coding | >Ophcf2|05710 ATGGCCAGCGCCACGGGCATGCCCGCGCGGGCCGAGGCTGGTGGCCCCGAGCCATCGGACACGGAGCCTCTCCTC GGACGGCCCGGCGACGTGATCCAGCGGCGCGACACGTCATTTCCCCGAAACTTGATTATGGGAACGGCCTCGCTC GCTCAACTCGGCGCCGTCCTCGGCCTGATCCTCGTCTGGGCTTCGGTCTTCAATAAGCCGCTGATTCTTTTCTCC GCCCATCCGTTGCTGCAGTCTCTTGCCGTCTTCACCCTCATCCAGTCGGTGCTGTCGCTGCAACCGACTCACACG GCCGAGCAGAAGCGGCTGGGTCAGCGCGTCCACGCGTCTCTCAACCTCGTGGCTCTCTTGCTGCTCATTGCCGGC GTCACCATCATCGAGTACAACAAGCTGTCGTCTCATGGCCCGCACTTTCACTCGGTCCACGGCTACCTCGGCGTC ATTGTCAGCATCATCATCATCATGCAGTACCTCGTCGGCTTCACCATGTGGGCAGTCCCGGCTCTGTACGGCGGC GAGGTCCGTGCCCGCTCCGTCTGGAAATACCACCGCTACTCGGGATATGTGGTGCTCCTGCTGCTGCTCGTGACG GTGTGCAGCGCCACCGAGACAGATTACAACCGCAATGTGCTGCACATGAAGCTCTGGGCCACTGTTCTGGCCTCC ATCCTCGTCGTTGTCGGCGTCTTCCCACGCATCCAGAAGTACAAGCTCGGACTCGGCACTGCGTCTCCTGCACGC GATGCTGCCCGTTAA |
| Transcript | >Ophcf2|05710 ATGGCCAGCGCCACGGGCATGCCCGCGCGGGCCGAGGCTGGTGGCCCCGAGCCATCGGACACGGAGCCTCTCCTC GGACGGCCCGGCGACGTGATCCAGCGGCGCGACACGTCATTTCCCCGAAACTTGATTATGGGAACGGCCTCGCTC GCTCAACTCGGCGCCGTCCTCGGCCTGATCCTCGTCTGGGCTTCGGTCTTCAATAAGCCGCTGATTCTTTTCTCC GCCCATCCGTTGCTGCAGTCTCTTGCCGTCTTCACCCTCATCCAGTCGGTGCTGTCGCTGCAACCGACTCACACG GCCGAGCAGAAGCGGCTGGGTCAGCGCGTCCACGCGTCTCTCAACCTCGTGGCTCTCTTGCTGCTCATTGCCGGC GTCACCATCATCGAGTACAACAAGCTGTCGTCTCATGGCCCGCACTTTCACTCGGTCCACGGCTACCTCGGCGTC ATTGTCAGCATCATCATCATCATGCAGTACCTCGTCGGCTTCACCATGTGGGCAGTCCCGGCTCTGTACGGCGGC GAGGTCCGTGCCCGCTCCGTCTGGAAATACCACCGCTACTCGGGATATGTGGTGCTCCTGCTGCTGCTCGTGACG GTGTGCAGCGCCACCGAGACAGATTACAACCGCAATGTGCTGCACATGAAGCTCTGGGCCACTGTTCTGGCCTCC ATCCTCGTCGTTGTCGGCGTCTTCCCACGCATCCAGAAGTACAAGCTCGGACTCGGCACTGCGTCTCCTGCACGC GATGCTGCCCGTTAA |
| Gene | >Ophcf2|05710 ATGGCCAGCGCCACGGGCATGCCCGCGCGGGCCGAGGCTGGTGGCCCCGAGCCATCGGACACGGAGCCTCTCCTC GGACGGCCCGGCGACGTGATCCAGCGGCGCGACACGTCATTTCCCCGAAACTTGATTATGGGTATGCTGCTGCCA GCGCTGCCTCGGCTCCTTCGTCTCGGATGATGCGCTGACCGGATGGCTCGTCAGGAACGGCCTCGCTCGCTCAAC TCGGCGCCGTCCTCGGCCTGATCCTCGTCTGGGCTTCGGTCTTCAATAAGCCGCTGATTCTTTTCTCCGCCCATC CGTTGCTGCAGTCTCTTGCCGTCTTCACCCTCATCCAGTCGGTGCTGTCGCTGCAACCGACTCACACGGCCGAGC AGAAGCGGCTGGGTCAGCGCGTCCACGCGTCTCTCAACCTCGTGGCTCTCTTGCTGCTCATTGCCGGCGTCACCA TCATCGAGTACAACAAGCTGTCGTCTCATGGCCCGCACTTTCACTCGGTCCACGGCTACCTCGGCGTCATTGTCA GCATCATCATCATCATGCAGTACCTCGTCGGCTTCACCATGTGGGCAGTCCCGGCTCTGTACGGCGGCGAGGTCC GTGCCCGCTCCGTCTGGAAATACCACCGCTACTCGGGATATGTGGTGCTCCTGCTGCTGCTCGTGACGGTGTGCA GCGCCACCGAGACAGATTACAACCGCAATGTGCTGCACATGAAGCTCTGGGCCACTGTTCTGGCCTCCATCCTCG TCGTTGTCGGCGTCTTCCCACGCATCCAGAAGTACAAGCTCGGACTCGGCACTGCGTCTCCTGCACGCGATGCTG CCCGTTAA |