Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05684
Gene name
Locationscaffold_06:1992320..1993504
Strand+
Gene length (bp)1184
Transcript length (bp)1125
Coding sequence length (bp)1125
Protein length (aa) 375

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain 1.2E-17 10 82
PF04116 FA_hydroxylase Fatty acid hydroxylase 8.4E-12 224 366

GO

GO Term Description Terminal node
GO:0016491 oxidoreductase activity Yes
GO:0008610 lipid biosynthetic process Yes
GO:0005506 iron ion binding Yes
GO:0006629 lipid metabolic process No
GO:0043169 cation binding No
GO:0005488 binding No
GO:0009058 biosynthetic process No
GO:1901576 organic substance biosynthetic process No
GO:0046872 metal ion binding No
GO:0003674 molecular_function No
GO:0008150 biological_process No
GO:0043167 ion binding No
GO:0003824 catalytic activity No
GO:0008152 metabolic process No
GO:0046914 transition metal ion binding No
GO:0044238 primary metabolic process No
GO:0071704 organic substance metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

Domain # Start End Length
1 191 213 22
2 220 242 22
3 275 297 22
4 304 326 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 70.82 40.00 101.64
Alive In ants, during behavior modification 201.42 102.86 299.98
Dead In ants, recently dead 195.80 107.00 284.60

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.902039 no
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05684
MPSRTLPTLTRAEVQSHDSASSCYVTIGSKVFDVTDFLADHPGGPDLILEYAGKDVEDILQDYASHPHSEAAYEV
LDDSLIGFVASPKAVVPATNGAAALPVKTDSGGIPYVHPRTGMSCEDDLSKETDYSQDYNKHKFLDLGKPLFPQV
WYGGFSKEFYLDQVHRPRHYKGGRSAPLFGNFLEPLTKTPWWLIPTIWLPCVAYGTYLASQGYYGPAATASFWAF
GLFLWTLVEYGMHRFLFHVDDYLPDNRVGITAHFLLHGVHHYLPMDKYRLVMPPVLFVVLATPFWRLAHFLLSFD
WHAATAVFCGGIFGYICYDLTHYFLHHQNLPLWYKQLKKYHLQHHFLDYELGFGVTSKFWDTVFGTELQPIKMK*
Coding >Ophcf2|05684
ATGCCTTCGAGGACGCTCCCGACGCTGACTCGCGCCGAGGTGCAGTCGCACGACTCTGCCTCGTCGTGCTACGTC
ACCATTGGCTCCAAGGTCTTCGATGTCACCGATTTCCTCGCCGATCACCCCGGCGGCCCCGACCTCATCCTCGAA
TATGCCGGCAAGGACGTCGAGGATATCCTCCAGGACTACGCGTCGCACCCACACTCTGAGGCTGCCTACGAGGTT
CTCGACGACTCCTTGATCGGCTTCGTTGCCTCACCAAAGGCTGTTGTTCCCGCCACAAACGGCGCGGCGGCGTTG
CCCGTCAAGACCGACTCCGGCGGCATCCCCTACGTCCACCCGCGCACCGGCATGTCGTGTGAGGACGATTTATCG
AAAGAGACCGACTACAGCCAGGACTATAACAAGCACAAGTTTCTCGACCTCGGAAAGCCGCTCTTCCCTCAAGTC
TGGTACGGCGGGTTCAGCAAAGAATTCTATCTAGATCAGGTTCACCGCCCGCGCCATTACAAAGGTGGCAGGTCG
GCGCCCCTATTCGGCAACTTCCTCGAGCCGCTCACCAAGACCCCGTGGTGGTTGATCCCGACTATCTGGCTGCCG
TGTGTCGCATACGGCACCTATCTGGCTTCACAAGGCTACTACGGACCCGCGGCCACGGCCTCTTTCTGGGCGTTT
GGTCTCTTTCTTTGGACGCTTGTCGAGTACGGCATGCATCGGTTTCTGTTTCACGTGGATGACTATCTGCCTGAT
AACCGGGTTGGCATCACGGCGCATTTTCTGCTGCATGGCGTCCATCACTATCTCCCGATGGACAAGTATCGCCTG
GTGATGCCGCCCGTTCTCTTTGTCGTTCTGGCGACTCCGTTCTGGCGTCTGGCTCATTTTCTTCTGTCCTTCGAC
TGGCACGCAGCTACGGCCGTCTTCTGCGGCGGCATCTTCGGCTACATCTGTTACGACCTGACGCATTACTTCCTG
CACCACCAGAACCTTCCTCTGTGGTACAAGCAGCTCAAGAAGTACCACTTGCAGCATCACTTTTTGGATTACGAG
CTGGGGTTTGGGGTCACGAGCAAGTTCTGGGACACCGTCTTCGGCACAGAGCTGCAGCCCATCAAGATGAAGTAG
Transcript >Ophcf2|05684
ATGCCTTCGAGGACGCTCCCGACGCTGACTCGCGCCGAGGTGCAGTCGCACGACTCTGCCTCGTCGTGCTACGTC
ACCATTGGCTCCAAGGTCTTCGATGTCACCGATTTCCTCGCCGATCACCCCGGCGGCCCCGACCTCATCCTCGAA
TATGCCGGCAAGGACGTCGAGGATATCCTCCAGGACTACGCGTCGCACCCACACTCTGAGGCTGCCTACGAGGTT
CTCGACGACTCCTTGATCGGCTTCGTTGCCTCACCAAAGGCTGTTGTTCCCGCCACAAACGGCGCGGCGGCGTTG
CCCGTCAAGACCGACTCCGGCGGCATCCCCTACGTCCACCCGCGCACCGGCATGTCGTGTGAGGACGATTTATCG
AAAGAGACCGACTACAGCCAGGACTATAACAAGCACAAGTTTCTCGACCTCGGAAAGCCGCTCTTCCCTCAAGTC
TGGTACGGCGGGTTCAGCAAAGAATTCTATCTAGATCAGGTTCACCGCCCGCGCCATTACAAAGGTGGCAGGTCG
GCGCCCCTATTCGGCAACTTCCTCGAGCCGCTCACCAAGACCCCGTGGTGGTTGATCCCGACTATCTGGCTGCCG
TGTGTCGCATACGGCACCTATCTGGCTTCACAAGGCTACTACGGACCCGCGGCCACGGCCTCTTTCTGGGCGTTT
GGTCTCTTTCTTTGGACGCTTGTCGAGTACGGCATGCATCGGTTTCTGTTTCACGTGGATGACTATCTGCCTGAT
AACCGGGTTGGCATCACGGCGCATTTTCTGCTGCATGGCGTCCATCACTATCTCCCGATGGACAAGTATCGCCTG
GTGATGCCGCCCGTTCTCTTTGTCGTTCTGGCGACTCCGTTCTGGCGTCTGGCTCATTTTCTTCTGTCCTTCGAC
TGGCACGCAGCTACGGCCGTCTTCTGCGGCGGCATCTTCGGCTACATCTGTTACGACCTGACGCATTACTTCCTG
CACCACCAGAACCTTCCTCTGTGGTACAAGCAGCTCAAGAAGTACCACTTGCAGCATCACTTTTTGGATTACGAG
CTGGGGTTTGGGGTCACGAGCAAGTTCTGGGACACCGTCTTCGGCACAGAGCTGCAGCCCATCAAGATGAAGTAG
Gene >Ophcf2|05684
ATGCCTTCGAGGACGCTCCCGACGCTGACTCGCGCCGAGGTGCAGTCGCACGACTCTGCCTCGTCGTGCTACGTC
ACCATTGGCTCCAAGGTCTTCGATGTCACCGATTTCCTCGCCGATCACCCCGGCGGCCCCGACCTCATCCTCGAA
TATGCCGGCAAGGACGTCGAGGATATCCTCCAGGACTACGCGTCGCACCCACACTCTGAGGCTGCCTACGAGGTT
CTCGACGACTCCTTGATCGGCTTCGTTGCCTCACCAAAGGCTGTTGTTCCCGCCACAAACGGCGCGGCGGCGTTG
CCCGTCAAGACCGACTCCGGCGGCATCCCCTACGTCCACCCGCGCACCGGCATGTCGTGTGAGGACGATTTATCG
AAAGAGACCGACTACAGCCAGGACTATAACAAGCACAAGTTTCTCGACCTCGGAAAGCCGCTCTTCCCTCAAGTC
TGGTACGGCGGGTTCAGCAAAGAATTCTATCTAGATCAGGTTCACCGCCCGCGCCATTACAAAGGTGGCAGGTCG
GCGCCCCTATTCGGCAACTTCCTCGAGCCGCTCACCAAGACCCCGTGGTGGTTGATCCCGACTATCTGGCTGCCG
TGTGTCGCATACGGCACCTATCTGGCTTCACAAGGCTACTACGGACCCGCGGCCACGGCCTCTTTCTGGGCGTTT
GGTCTCTTTCTTTGGACGCTTGTCGAGTACGGCATGCATCGGTTTCTGTTTCACGTGGATGAGTACGTCTAGGCC
TGGCCATCTTTTCGCGGGGCGTTTCTTTGGCTGATGTCGAATACAGCTATCTGCCTGATAACCGGGTTGGCATCA
CGGCGCATTTTCTGCTGCATGGCGTCCATCACTATCTCCCGATGGACAAGTATCGCCTGGTGATGCCGCCCGTTC
TCTTTGTCGTTCTGGCGACTCCGTTCTGGCGTCTGGCTCATTTTCTTCTGTCCTTCGACTGGCACGCAGCTACGG
CCGTCTTCTGCGGCGGCATCTTCGGCTACATCTGTTACGACCTGACGCATTACTTCCTGCACCACCAGAACCTTC
CTCTGTGGTACAAGCAGCTCAAGAAGTACCACTTGCAGCATCACTTTTTGGATTACGAGCTGGGGTTTGGGGTCA
CGAGCAAGTTCTGGGACACCGTCTTCGGCACAGAGCTGCAGCCCATCAAGATGAAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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