Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|05664
Gene name
Location	scaffold_06:1931408..1932541
Strand	+
Gene length (bp)	1133
Transcript length (bp)	738
Coding sequence length (bp)	738
Protein length (aa)	246

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00153	Mito_carr	Mitochondrial carrier protein	2.7E-20	5	96
PF00153	Mito_carr	Mitochondrial carrier protein	1.3E-17	108	202

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 22	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	4	26	22
2	67	89	22
3	109	131	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	42.92	20.40	65.44
Alive	In ants, during behavior modification	36.58	16.32	56.84
Dead	In ants, recently dead	49.84	24.00	75.69

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.547860	no
Alive	Dead	0.133672	no
Dead	Fungus	0.565972	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|05664 MSTTLGAFIAGGIAACGAVTATHPFETVKIRMQLQGELQSKGHQPHHYRGPFHGVSVIVKHEGVRGLYRGLGCAY VYQILLNGCRLGFYDPMRNCLGSLIFNDKNAQNLAINMFCGASSGVIGAAAGSPFFLVKTRLQSYSPFLPVGTQH QYRNAWDGMSKIYRSEGLAGLYRGAGAAMIRTGFGSSVQLPTYFFAKRRLIQHAGMEEGPALHLASSTVSGFVVC CVMHPPDTIMSRLYNQNAKA*
Coding	>Ophcf2\|05664 ATGTCCACTACATTAGGGGCCTTCATCGCCGGTGGCATTGCGGCCTGTGGTGCCGTTACCGCGACTCACCCTTTC GAGACAGTCAAGATCCGTATGCAATTGCAAGGCGAGCTCCAATCCAAGGGCCATCAGCCGCATCATTATCGTGGA CCCTTCCACGGCGTCAGTGTCATTGTGAAGCACGAGGGAGTTCGGGGCTTATATCGCGGTCTGGGCTGCGCATAC GTCTACCAAATACTCCTCAACGGCTGCCGGCTCGGCTTTTACGATCCCATGCGCAATTGTCTGGGATCCCTAATC TTCAACGACAAGAATGCGCAAAACCTGGCCATCAACATGTTCTGCGGCGCCTCCTCGGGCGTCATCGGAGCCGCA GCCGGGAGCCCCTTTTTTCTGGTCAAAACACGCCTCCAGAGCTATTCGCCTTTTCTTCCTGTCGGCACGCAGCAC CAATATCGGAACGCATGGGATGGCATGTCGAAGATCTACCGCAGCGAGGGTCTCGCCGGCCTCTACCGCGGTGCC GGTGCAGCCATGATTCGCACCGGTTTTGGAAGCTCCGTCCAGCTACCGACTTATTTCTTCGCCAAGCGACGACTC ATTCAACACGCCGGAATGGAAGAAGGGCCGGCCTTGCACCTCGCCAGTAGCACCGTCAGCGGATTCGTCGTCTGC TGCGTCATGCATCCTCCTGACACAATAATGTCTCGTCTGTACAATCAGAATGCCAAAGCATAG
Transcript	>Ophcf2\|05664 ATGTCCACTACATTAGGGGCCTTCATCGCCGGTGGCATTGCGGCCTGTGGTGCCGTTACCGCGACTCACCCTTTC GAGACAGTCAAGATCCGTATGCAATTGCAAGGCGAGCTCCAATCCAAGGGCCATCAGCCGCATCATTATCGTGGA CCCTTCCACGGCGTCAGTGTCATTGTGAAGCACGAGGGAGTTCGGGGCTTATATCGCGGTCTGGGCTGCGCATAC GTCTACCAAATACTCCTCAACGGCTGCCGGCTCGGCTTTTACGATCCCATGCGCAATTGTCTGGGATCCCTAATC TTCAACGACAAGAATGCGCAAAACCTGGCCATCAACATGTTCTGCGGCGCCTCCTCGGGCGTCATCGGAGCCGCA GCCGGGAGCCCCTTTTTTCTGGTCAAAACACGCCTCCAGAGCTATTCGCCTTTTCTTCCTGTCGGCACGCAGCAC CAATATCGGAACGCATGGGATGGCATGTCGAAGATCTACCGCAGCGAGGGTCTCGCCGGCCTCTACCGCGGTGCC GGTGCAGCCATGATTCGCACCGGTTTTGGAAGCTCCGTCCAGCTACCGACTTATTTCTTCGCCAAGCGACGACTC ATTCAACACGCCGGAATGGAAGAAGGGCCGGCCTTGCACCTCGCCAGTAGCACCGTCAGCGGATTCGTCGTCTGC TGCGTCATGCATCCTCCTGACACAATAATGTCTCGTCTGTACAATCAGAATGCCAAAGCATAG
Gene	>Ophcf2\|05664 ATGTCCACTACATTAGGGTTTGTTTGAGGATATAGCTGTACTCGCTGTGCAACCGACTTAAATTGTCTTTCTTCT CCAGGGCCTTCATCGCCGGTGGCATTGCGGCCTGTGGTGCCGTTACCGCGACTCACCCTTTCGAGACAGTCAAGA TCCGGTAATTGGGCGCCGCCAGATCCCCCCCTTGCGTGGATTTGGCGACCTGACAGCGGCTTTGACCGGCAGTAT GCAATTGCAAGGCGAGCTCCAATCCAAGGGCCATCAGCCGCATCATTATCGTGGACCCTTCCACGGCGTCAGTGT CATTGTGAAGCACGAGGGAGTTCGGGGCTTATATCGCGGTCTGGGCTGCGCATACGTCTACCAAATACTCCTCAA CGGCTGCCGGCTCGGCTTTTACGATCCCATGCGCAATTGTCTGGGATCCCTAATCTTCAACGACAAGAATGCGCA AAACCTGGCCATCAACATGTTCTGCGGCGCCTCCTCGGGCGTCATCGGAGCCGCAGCCGGGAGCCCCTTTTTTCT GGTCAAAACACGCCTCCAGAGCTATTCGCCTTTTCTTCCTGTCGGCACGCAGCACCAATATCGGAACGCATGGGA TGGCATGTCGAAGATCTACCGCAGCGAGGGTCTCGCCGGCCTCTACCGCGGTGCCGGTGCAGCCATGATTCGCAC CGGTTTTGGAAGCTCCGTCCAGCTACCGACTTATTTCTTCGCCAAGCGACGACTCATTCAACACGCCGGAATGGA AGAAGGGCCGGCCTTGCACCTCGCCAGTAGCACCGTCAGCGGATTCGTCGTCTGCTGCGTCATGCATCCTCCTGG TAAGAGGCCGTCATCCCTTCCGTCGTGGCCATGAAGACGGGATAGCTAACGCTCGCTGTTACTCACCCATCAAAG ACACAATAATGTCTCGTCTGTACAATCAGAATGGTAACTTGTACAAGGGAGTCTTTGACTGTCTGGCAAAGACTA TACGCACCGAAGGCTTCCTTGCGATCTATAAGGGCTTTCTCCCACATTTGGCCCGGATATTGCCACATACAATCC TCACCCTCTCCCTTGCCGAGCAAACGAATAAATTAATGAGAAGAGTCGAAGGTCGCGTTCTGCCCATGCTAGCCA AAGCATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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