© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05664 |
| Gene name | |
| Location | scaffold_06:1931408..1932541 |
| Strand | + |
| Gene length (bp) | 1133 |
| Transcript length (bp) | 738 |
| Coding sequence length (bp) | 738 |
| Protein length (aa) | 246 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00153 | Mito_carr | Mitochondrial carrier protein | 2.7E-20 | 5 | 96 |
| PF00153 | Mito_carr | Mitochondrial carrier protein | 1.3E-17 | 108 | 202 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Transmembrane domain|Mitochondrial transit peptide | 0.0748 | 0.1686 | 0.0092 | 0.1447 | 0.9703 | 0.1981 | 0.2007 | 0.1591 | 0.0953 | 0.0608 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 26 | 22 |
| 2 | 67 | 89 | 22 |
| 3 | 109 | 131 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5183 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05664 MSTTLGAFIAGGIAACGAVTATHPFETVKIRMQLQGELQSKGHQPHHYRGPFHGVSVIVKHEGVRGLYRGLGCAY VYQILLNGCRLGFYDPMRNCLGSLIFNDKNAQNLAINMFCGASSGVIGAAAGSPFFLVKTRLQSYSPFLPVGTQH QYRNAWDGMSKIYRSEGLAGLYRGAGAAMIRTGFGSSVQLPTYFFAKRRLIQHAGMEEGPALHLASSTVSGFVVC CVMHPPDTIMSRLYNQNAKA* |
| Coding | >Ophcf2|05664 ATGTCCACTACATTAGGGGCCTTCATCGCCGGTGGCATTGCGGCCTGTGGTGCCGTTACCGCGACTCACCCTTTC GAGACAGTCAAGATCCGTATGCAATTGCAAGGCGAGCTCCAATCCAAGGGCCATCAGCCGCATCATTATCGTGGA CCCTTCCACGGCGTCAGTGTCATTGTGAAGCACGAGGGAGTTCGGGGCTTATATCGCGGTCTGGGCTGCGCATAC GTCTACCAAATACTCCTCAACGGCTGCCGGCTCGGCTTTTACGATCCCATGCGCAATTGTCTGGGATCCCTAATC TTCAACGACAAGAATGCGCAAAACCTGGCCATCAACATGTTCTGCGGCGCCTCCTCGGGCGTCATCGGAGCCGCA GCCGGGAGCCCCTTTTTTCTGGTCAAAACACGCCTCCAGAGCTATTCGCCTTTTCTTCCTGTCGGCACGCAGCAC CAATATCGGAACGCATGGGATGGCATGTCGAAGATCTACCGCAGCGAGGGTCTCGCCGGCCTCTACCGCGGTGCC GGTGCAGCCATGATTCGCACCGGTTTTGGAAGCTCCGTCCAGCTACCGACTTATTTCTTCGCCAAGCGACGACTC ATTCAACACGCCGGAATGGAAGAAGGGCCGGCCTTGCACCTCGCCAGTAGCACCGTCAGCGGATTCGTCGTCTGC TGCGTCATGCATCCTCCTGACACAATAATGTCTCGTCTGTACAATCAGAATGCCAAAGCATAG |
| Transcript | >Ophcf2|05664 ATGTCCACTACATTAGGGGCCTTCATCGCCGGTGGCATTGCGGCCTGTGGTGCCGTTACCGCGACTCACCCTTTC GAGACAGTCAAGATCCGTATGCAATTGCAAGGCGAGCTCCAATCCAAGGGCCATCAGCCGCATCATTATCGTGGA CCCTTCCACGGCGTCAGTGTCATTGTGAAGCACGAGGGAGTTCGGGGCTTATATCGCGGTCTGGGCTGCGCATAC GTCTACCAAATACTCCTCAACGGCTGCCGGCTCGGCTTTTACGATCCCATGCGCAATTGTCTGGGATCCCTAATC TTCAACGACAAGAATGCGCAAAACCTGGCCATCAACATGTTCTGCGGCGCCTCCTCGGGCGTCATCGGAGCCGCA GCCGGGAGCCCCTTTTTTCTGGTCAAAACACGCCTCCAGAGCTATTCGCCTTTTCTTCCTGTCGGCACGCAGCAC CAATATCGGAACGCATGGGATGGCATGTCGAAGATCTACCGCAGCGAGGGTCTCGCCGGCCTCTACCGCGGTGCC GGTGCAGCCATGATTCGCACCGGTTTTGGAAGCTCCGTCCAGCTACCGACTTATTTCTTCGCCAAGCGACGACTC ATTCAACACGCCGGAATGGAAGAAGGGCCGGCCTTGCACCTCGCCAGTAGCACCGTCAGCGGATTCGTCGTCTGC TGCGTCATGCATCCTCCTGACACAATAATGTCTCGTCTGTACAATCAGAATGCCAAAGCATAG |
| Gene | >Ophcf2|05664 ATGTCCACTACATTAGGGTTTGTTTGAGGATATAGCTGTACTCGCTGTGCAACCGACTTAAATTGTCTTTCTTCT CCAGGGCCTTCATCGCCGGTGGCATTGCGGCCTGTGGTGCCGTTACCGCGACTCACCCTTTCGAGACAGTCAAGA TCCGGTAATTGGGCGCCGCCAGATCCCCCCCTTGCGTGGATTTGGCGACCTGACAGCGGCTTTGACCGGCAGTAT GCAATTGCAAGGCGAGCTCCAATCCAAGGGCCATCAGCCGCATCATTATCGTGGACCCTTCCACGGCGTCAGTGT CATTGTGAAGCACGAGGGAGTTCGGGGCTTATATCGCGGTCTGGGCTGCGCATACGTCTACCAAATACTCCTCAA CGGCTGCCGGCTCGGCTTTTACGATCCCATGCGCAATTGTCTGGGATCCCTAATCTTCAACGACAAGAATGCGCA AAACCTGGCCATCAACATGTTCTGCGGCGCCTCCTCGGGCGTCATCGGAGCCGCAGCCGGGAGCCCCTTTTTTCT GGTCAAAACACGCCTCCAGAGCTATTCGCCTTTTCTTCCTGTCGGCACGCAGCACCAATATCGGAACGCATGGGA TGGCATGTCGAAGATCTACCGCAGCGAGGGTCTCGCCGGCCTCTACCGCGGTGCCGGTGCAGCCATGATTCGCAC CGGTTTTGGAAGCTCCGTCCAGCTACCGACTTATTTCTTCGCCAAGCGACGACTCATTCAACACGCCGGAATGGA AGAAGGGCCGGCCTTGCACCTCGCCAGTAGCACCGTCAGCGGATTCGTCGTCTGCTGCGTCATGCATCCTCCTGG TAAGAGGCCGTCATCCCTTCCGTCGTGGCCATGAAGACGGGATAGCTAACGCTCGCTGTTACTCACCCATCAAAG ACACAATAATGTCTCGTCTGTACAATCAGAATGGTAACTTGTACAAGGGAGTCTTTGACTGTCTGGCAAAGACTA TACGCACCGAAGGCTTCCTTGCGATCTATAAGGGCTTTCTCCCACATTTGGCCCGGATATTGCCACATACAATCC TCACCCTCTCCCTTGCCGAGCAAACGAATAAATTAATGAGAAGAGTCGAAGGTCGCGTTCTGCCCATGCTAGCCA AAGCATAG |