Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05640
Gene name
Locationscaffold_06:1492206..1492531
Strand-
Gene length (bp)325
Transcript length (bp)222
Coding sequence length (bp)222
Protein length (aa) 74

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

Domain # Start End Length
1 5 24 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 396.25 172.29 620.21
Alive In ants, during behavior modification 335.61 133.88 537.34
Dead In ants, recently dead 225.85 80.03 371.67

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.564252 no
Alive Dead 0.091442 no
Dead Fungus 0.028350 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05640
MASRIAIPSLVAMMLFTGVCNTLLTKYQDNQCVRNCERNNAGRSVRFEQPVLQTAQMFVGEIGCWLVDEGMKR*
Coding >Ophcf2|05640
ATGGCGTCGAGGATTGCCATACCGTCTCTGGTGGCCATGATGCTATTTACCGGCGTTTGCAACACTCTTTTGACC
AAATACCAGGATAATCAATGTGTTCGAAATTGCGAGCGGAATAATGCTGGCCGAAGCGTTCGTTTCGAACAACCT
GTGCTTCAGACAGCACAAATGTTTGTCGGCGAGATAGGGTGCTGGCTTGTTGACGAGGGTATGAAGCGGTAA
Transcript >Ophcf2|05640
ATGGCGTCGAGGATTGCCATACCGTCTCTGGTGGCCATGATGCTATTTACCGGCGTTTGCAACACTCTTTTGACC
AAATACCAGGATAATCAATGTGTTCGAAATTGCGAGCGGAATAATGCTGGCCGAAGCGTTCGTTTCGAACAACCT
GTGCTTCAGACAGCACAAATGTTTGTCGGCGAGATAGGGTGCTGGCTTGTTGACGAGGGTATGAAGCGGTAA
Gene >Ophcf2|05640
ATGGCGTCGAGGATTGCCATACCGTCTCTGGTGGCCATGATGCTATTTACCGGCGTTTGCAACACTCTTTTGACC
AAATACCAGGTTTGACGACGCTAGTTCTGAACATAATTAATAAGACGCTGACTGTTTCAGGATAATCAATGTGTT
CGAAATTGCGAGCGGAATAATGCTGGCCGAAGCGTTCGTTTCGAACAACCTGTGCTTCAGACAGCACAAATGTTT
GTCGGCGAGATAGGGTGCTGGCTTGTTGTGGGTGTCGCAAATCTGTATCGCAAACTGAGGTCGAGGTATTCACCC
ACAGGACGAGGGTATGAAGCGGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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