Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05632
Gene name
Locationscaffold_06:1262176..1263752
Strand+
Gene length (bp)1576
Transcript length (bp)525
Coding sequence length (bp)525
Protein length (aa) 175

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03348 Serinc Serine incorporator (Serinc) 5.9E-51 23 162

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.5

Transmembrane Domains

Domain # Start End Length
1 15 37 22
2 49 71 22
3 96 118 22
4 131 150 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05632
MGGVLSLPLIALPSLAPIISFAATCCGAATCSVFCRACGKCGNSVATRVAYALLLLVNSTLAWIMLTPWAVRKLQ
HLTFDYVKINCPTGQCYGWLAVHRINFALGLFHLLLAGLLLGVHTSKNPRAVLQNGYWGPKLITWLSLMVVAFLI
PDKFFMFYGNYVKHEWHSVSHKSL*
Coding >Ophcf2|05632
ATGGGAGGGGTTCTGTCACTGCCATTAATCGCGCTGCCGAGTTTGGCACCAATTATCTCCTTCGCGGCAACCTGC
TGCGGGGCTGCGACATGTTCTGTGTTTTGTCGCGCGTGCGGCAAATGCGGCAACAGCGTGGCCACCCGTGTCGCT
TACGCTCTCCTACTCCTCGTTAATTCTACATTAGCCTGGATCATGCTCACGCCTTGGGCCGTCAGAAAGCTTCAA
CATCTTACATTCGACTACGTCAAAATAAATTGCCCCACTGGCCAATGCTACGGCTGGCTCGCCGTTCATCGCATC
AACTTTGCCCTTGGTCTTTTCCATCTACTCCTGGCCGGACTGCTACTGGGCGTCCACACCTCAAAGAATCCACGT
GCTGTTCTGCAGAATGGTTACTGGGGCCCCAAGCTGATTACTTGGCTGTCTTTGATGGTCGTTGCATTCTTGATT
CCCGACAAGTTCTTCATGTTTTATGGAAATTATGTCAAGCACGAATGGCACTCTGTAAGCCATAAGAGTCTCTAG
Transcript >Ophcf2|05632
ATGGGAGGGGTTCTGTCACTGCCATTAATCGCGCTGCCGAGTTTGGCACCAATTATCTCCTTCGCGGCAACCTGC
TGCGGGGCTGCGACATGTTCTGTGTTTTGTCGCGCGTGCGGCAAATGCGGCAACAGCGTGGCCACCCGTGTCGCT
TACGCTCTCCTACTCCTCGTTAATTCTACATTAGCCTGGATCATGCTCACGCCTTGGGCCGTCAGAAAGCTTCAA
CATCTTACATTCGACTACGTCAAAATAAATTGCCCCACTGGCCAATGCTACGGCTGGCTCGCCGTTCATCGCATC
AACTTTGCCCTTGGTCTTTTCCATCTACTCCTGGCCGGACTGCTACTGGGCGTCCACACCTCAAAGAATCCACGT
GCTGTTCTGCAGAATGGTTACTGGGGCCCCAAGCTGATTACTTGGCTGTCTTTGATGGTCGTTGCATTCTTGATT
CCCGACAAGTTCTTCATGTTTTATGGAAATTATGTCAAGCACGAATGGCACTCTGTAAGCCATAAGAGTCTCTAG
Gene >Ophcf2|05632
ATGGGAGGGGTTCTGTCACTGCCATTAATCGCGCTGCCGAGTTTGGCACCAGTACGTCGTGTCGCCGCTGTTCTA
TGCGAGTCCTATTGACGCCGTTACTAGATTATCTCCTTCGCGGCAACCTGCTGCGGGGCTGCGACATGTTCTGTG
TTTTGTCGCGCGTGCGGCAAATGCGGCAACAGGTGTGATGAGTCTCGCTGTCTCTGGCCTTGCTAATCAGTTCCC
CCCAGCGTGGCCACCCGTGTCGCTTACGCTCTCCTACTCCTCGTTAATTCTACATTAGCCTGGATCATGCTCACG
CCTTGGGCCGTCAGAAAGCTTCAACATCTTACATTCGACTACGTCAAAATAAATTGCCCCACTGGCCAATGCTAC
GGCTGGCTCGCCGTTCATCGCATCAACTTTGCCCTTGGTCTTTTCCATCTACTCCTGGCCGGACTGCTACTGGGC
GTCCACACCTCAAAGAATCCACGTGCTGTTCTGCAGAATGGTTACTGGGGCCCCAAGCTGATTACTTGGCTGTCT
TTGATGGTCGTTGCATTCTTGATTCCCGACAAGTTCTTCATGTTTTATGGAAATTATGTGTCCCTCATCTGTGCA
ATGATTTTTCTTCTTCTCGGTCTCGTTTTGTTAGTTGACCTTGCACATAACTGGGCAGAATACTGCCTATTGCAG
ATTGAGAACCAGGATTCGAAATTTTGGCGCTTTACTCTCATCGGTTCAACACTCGGAATGTACTTCGCGTCCATC
GCAATGACGGTGGTTCAATATGTCTTCTTCGCTAAAGGAGATTGCGCAATGAACCAGGCTGTGATAAGCATTAAC
TTACTACTCTGGGTCTTTGTGTCCTTTCTGTCTGTCAATCCGACGGTTCAAGAGCACAACCCCCGCGCAGGATTA
GCTCAGGCGGCCATGGTTGCTGCGTATTGCACTTACCTTATCATGTCGGCCGTGTCAATGGAGCCCGATGGTGAC
AATCAATGCAATCCCTTGATTCGGGGACAAGAGACAAGGACAACCTCGGTTATCATTGGTGCTGTTGTAACTATG
CTAACTATAGCATATACCACCACACGCGCTGCTACTCAGAGTTTGGGTCTTGGATCTTCCGATGGTGTTATCCGG
CTTCCTGAAGACGATAATCAGCATGGCCCGGTCACCCAACAACCCACCGCTCGAGGTCAGATGAGGGCCGAGGCA
CTACGACGCGCGATTGAGGAAGGAAGTTTGCCTGCAGATGCGGAGCTTGACAGCGAGTTAGACATCGCTGAAAGA
CCAGAGCACGATGACGAGCGCTCTTGCACTCAGTACAATTACACCATTTTTCACGTTATTTTCTTTCTCGCTACT
GCATGGGTGTCAACTTTACTCACGCTGAAGTTTGAGGAAACAATTCAAGACGGAGATTTTGCAACTGTTGGCCGG
ACGTACGCCGCAAGTTGGGTGAAAATCATTAGCGCGTGGATATGCTATGGCCTGTATATCTGGACTTTGATGGCT
CCGGTTATTCTGCCTGAAAGGTTTGACTCGTTATAGCAAGCACGAATGGCACTCTGTAAGCCATAAGAGTCTCTA
G

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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