© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05632 |
| Gene name | |
| Location | scaffold_06:1262176..1263752 |
| Strand | + |
| Gene length (bp) | 1576 |
| Transcript length (bp) | 525 |
| Coding sequence length (bp) | 525 |
| Protein length (aa) | 175 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03348 | Serinc | Serine incorporator (Serinc) | 5.9E-51 | 23 | 162 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane|Endoplasmic reticulum|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.0993 | 0.0858 | 0.1089 | 0.6689 | 0.2228 | 0.0247 | 0.7424 | 0.5761 | 0.3992 | 0.0093 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 49 | 71 | 22 |
| 3 | 96 | 118 | 22 |
| 4 | 131 | 150 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 5132 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05632 MGGVLSLPLIALPSLAPIISFAATCCGAATCSVFCRACGKCGNSVATRVAYALLLLVNSTLAWIMLTPWAVRKLQ HLTFDYVKINCPTGQCYGWLAVHRINFALGLFHLLLAGLLLGVHTSKNPRAVLQNGYWGPKLITWLSLMVVAFLI PDKFFMFYGNYVKHEWHSVSHKSL* |
| Coding | >Ophcf2|05632 ATGGGAGGGGTTCTGTCACTGCCATTAATCGCGCTGCCGAGTTTGGCACCAATTATCTCCTTCGCGGCAACCTGC TGCGGGGCTGCGACATGTTCTGTGTTTTGTCGCGCGTGCGGCAAATGCGGCAACAGCGTGGCCACCCGTGTCGCT TACGCTCTCCTACTCCTCGTTAATTCTACATTAGCCTGGATCATGCTCACGCCTTGGGCCGTCAGAAAGCTTCAA CATCTTACATTCGACTACGTCAAAATAAATTGCCCCACTGGCCAATGCTACGGCTGGCTCGCCGTTCATCGCATC AACTTTGCCCTTGGTCTTTTCCATCTACTCCTGGCCGGACTGCTACTGGGCGTCCACACCTCAAAGAATCCACGT GCTGTTCTGCAGAATGGTTACTGGGGCCCCAAGCTGATTACTTGGCTGTCTTTGATGGTCGTTGCATTCTTGATT CCCGACAAGTTCTTCATGTTTTATGGAAATTATGTCAAGCACGAATGGCACTCTGTAAGCCATAAGAGTCTCTAG |
| Transcript | >Ophcf2|05632 ATGGGAGGGGTTCTGTCACTGCCATTAATCGCGCTGCCGAGTTTGGCACCAATTATCTCCTTCGCGGCAACCTGC TGCGGGGCTGCGACATGTTCTGTGTTTTGTCGCGCGTGCGGCAAATGCGGCAACAGCGTGGCCACCCGTGTCGCT TACGCTCTCCTACTCCTCGTTAATTCTACATTAGCCTGGATCATGCTCACGCCTTGGGCCGTCAGAAAGCTTCAA CATCTTACATTCGACTACGTCAAAATAAATTGCCCCACTGGCCAATGCTACGGCTGGCTCGCCGTTCATCGCATC AACTTTGCCCTTGGTCTTTTCCATCTACTCCTGGCCGGACTGCTACTGGGCGTCCACACCTCAAAGAATCCACGT GCTGTTCTGCAGAATGGTTACTGGGGCCCCAAGCTGATTACTTGGCTGTCTTTGATGGTCGTTGCATTCTTGATT CCCGACAAGTTCTTCATGTTTTATGGAAATTATGTCAAGCACGAATGGCACTCTGTAAGCCATAAGAGTCTCTAG |
| Gene | >Ophcf2|05632 ATGGGAGGGGTTCTGTCACTGCCATTAATCGCGCTGCCGAGTTTGGCACCAGTACGTCGTGTCGCCGCTGTTCTA TGCGAGTCCTATTGACGCCGTTACTAGATTATCTCCTTCGCGGCAACCTGCTGCGGGGCTGCGACATGTTCTGTG TTTTGTCGCGCGTGCGGCAAATGCGGCAACAGGTGTGATGAGTCTCGCTGTCTCTGGCCTTGCTAATCAGTTCCC CCCAGCGTGGCCACCCGTGTCGCTTACGCTCTCCTACTCCTCGTTAATTCTACATTAGCCTGGATCATGCTCACG CCTTGGGCCGTCAGAAAGCTTCAACATCTTACATTCGACTACGTCAAAATAAATTGCCCCACTGGCCAATGCTAC GGCTGGCTCGCCGTTCATCGCATCAACTTTGCCCTTGGTCTTTTCCATCTACTCCTGGCCGGACTGCTACTGGGC GTCCACACCTCAAAGAATCCACGTGCTGTTCTGCAGAATGGTTACTGGGGCCCCAAGCTGATTACTTGGCTGTCT TTGATGGTCGTTGCATTCTTGATTCCCGACAAGTTCTTCATGTTTTATGGAAATTATGTGTCCCTCATCTGTGCA ATGATTTTTCTTCTTCTCGGTCTCGTTTTGTTAGTTGACCTTGCACATAACTGGGCAGAATACTGCCTATTGCAG ATTGAGAACCAGGATTCGAAATTTTGGCGCTTTACTCTCATCGGTTCAACACTCGGAATGTACTTCGCGTCCATC GCAATGACGGTGGTTCAATATGTCTTCTTCGCTAAAGGAGATTGCGCAATGAACCAGGCTGTGATAAGCATTAAC TTACTACTCTGGGTCTTTGTGTCCTTTCTGTCTGTCAATCCGACGGTTCAAGAGCACAACCCCCGCGCAGGATTA GCTCAGGCGGCCATGGTTGCTGCGTATTGCACTTACCTTATCATGTCGGCCGTGTCAATGGAGCCCGATGGTGAC AATCAATGCAATCCCTTGATTCGGGGACAAGAGACAAGGACAACCTCGGTTATCATTGGTGCTGTTGTAACTATG CTAACTATAGCATATACCACCACACGCGCTGCTACTCAGAGTTTGGGTCTTGGATCTTCCGATGGTGTTATCCGG CTTCCTGAAGACGATAATCAGCATGGCCCGGTCACCCAACAACCCACCGCTCGAGGTCAGATGAGGGCCGAGGCA CTACGACGCGCGATTGAGGAAGGAAGTTTGCCTGCAGATGCGGAGCTTGACAGCGAGTTAGACATCGCTGAAAGA CCAGAGCACGATGACGAGCGCTCTTGCACTCAGTACAATTACACCATTTTTCACGTTATTTTCTTTCTCGCTACT GCATGGGTGTCAACTTTACTCACGCTGAAGTTTGAGGAAACAATTCAAGACGGAGATTTTGCAACTGTTGGCCGG ACGTACGCCGCAAGTTGGGTGAAAATCATTAGCGCGTGGATATGCTATGGCCTGTATATCTGGACTTTGATGGCT CCGGTTATTCTGCCTGAAAGGTTTGACTCGTTATAGCAAGCACGAATGGCACTCTGTAAGCCATAAGAGTCTCTA G |