© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05573 |
| Gene name | |
| Location | scaffold_06:592101..592963 |
| Strand | + |
| Gene length (bp) | 862 |
| Transcript length (bp) | 801 |
| Coding sequence length (bp) | 801 |
| Protein length (aa) | 267 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13398 | Peptidase_M50B | Peptidase M50B-like | 1.1E-59 | 39 | 240 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 69 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 37 | 59 | 22 |
| 2 | 103 | 125 | 22 |
| 3 | 127 | 149 | 22 |
| 4 | 154 | 173 | 19 |
| 5 | 178 | 196 | 18 |
| 6 | 224 | 246 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 99.73 | 55.95 | 143.51 |
| Alive | In ants, during behavior modification | 11.83 | 3.75 | 19.91 |
| Dead | In ants, recently dead | 18.95 | 7.24 | 30.67 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.045988 | yes |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05573 MAPSLAFFYSGGEERHAAVFIRDLRDPTPAQRMTLSVIAVYILAIAILWNVPYLRISLWPFKMLVIAFHEFGHAI TAILTGGRVDSISLDPREGGVTHLRGGISFLTLPAGYLGSSLIGALLIFCGFNIVASKVVSLVLGLCFLATLWWG KRDWLTIVTVLMAVGLLVACWFIRHAEALRFVVLFIGVMSSLYSVWDICDDLVLRKVNSSDASVFAKRYGGSSIC WGILWGIVSLLVMAAGVIAGVATFSQSNHQMLEESKAFIPT* |
| Coding | >Ophcf2|05573 ATGGCGCCCAGCCTGGCTTTCTTCTACTCGGGAGGGGAAGAGCGTCATGCTGCCGTCTTTATTCGTGATTTGAGG GATCCGACGCCGGCGCAGAGGATGACTCTCTCCGTCATTGCAGTCTATATCCTCGCCATCGCTATCCTATGGAAC GTTCCTTACCTACGAATCTCCCTCTGGCCCTTTAAAATGCTCGTCATCGCCTTCCACGAATTCGGCCACGCCATA ACCGCCATCCTGACAGGCGGCCGCGTCGATTCCATCTCCCTCGATCCGCGCGAGGGGGGCGTGACGCACCTCCGC GGCGGAATCAGCTTCCTGACTTTACCGGCCGGCTACCTCGGGTCCTCACTCATCGGCGCGCTGCTCATCTTCTGC GGCTTCAACATCGTGGCTTCCAAAGTGGTCAGCCTCGTGCTGGGGTTGTGTTTTCTGGCGACGCTTTGGTGGGGG AAGCGCGACTGGTTGACGATTGTTACGGTTCTCATGGCTGTGGGCTTGTTGGTCGCGTGCTGGTTTATTCGTCAT GCCGAAGCGTTGCGCTTCGTCGTGCTCTTCATTGGCGTCATGAGTTCGTTGTATAGCGTGTGGGATATCTGCGAT GATTTGGTCCTGCGAAAGGTGAATTCTTCGGATGCCAGTGTCTTTGCCAAGAGGTATGGTGGTTCATCCATCTGT TGGGGGATCCTTTGGGGCATTGTTTCGCTGCTGGTCATGGCCGCGGGTGTCATTGCTGGAGTGGCCACTTTTTCG CAGTCGAATCATCAGATGTTGGAAGAGTCTAAGGCTTTTATACCGACTTGA |
| Transcript | >Ophcf2|05573 ATGGCGCCCAGCCTGGCTTTCTTCTACTCGGGAGGGGAAGAGCGTCATGCTGCCGTCTTTATTCGTGATTTGAGG GATCCGACGCCGGCGCAGAGGATGACTCTCTCCGTCATTGCAGTCTATATCCTCGCCATCGCTATCCTATGGAAC GTTCCTTACCTACGAATCTCCCTCTGGCCCTTTAAAATGCTCGTCATCGCCTTCCACGAATTCGGCCACGCCATA ACCGCCATCCTGACAGGCGGCCGCGTCGATTCCATCTCCCTCGATCCGCGCGAGGGGGGCGTGACGCACCTCCGC GGCGGAATCAGCTTCCTGACTTTACCGGCCGGCTACCTCGGGTCCTCACTCATCGGCGCGCTGCTCATCTTCTGC GGCTTCAACATCGTGGCTTCCAAAGTGGTCAGCCTCGTGCTGGGGTTGTGTTTTCTGGCGACGCTTTGGTGGGGG AAGCGCGACTGGTTGACGATTGTTACGGTTCTCATGGCTGTGGGCTTGTTGGTCGCGTGCTGGTTTATTCGTCAT GCCGAAGCGTTGCGCTTCGTCGTGCTCTTCATTGGCGTCATGAGTTCGTTGTATAGCGTGTGGGATATCTGCGAT GATTTGGTCCTGCGAAAGGTGAATTCTTCGGATGCCAGTGTCTTTGCCAAGAGGTATGGTGGTTCATCCATCTGT TGGGGGATCCTTTGGGGCATTGTTTCGCTGCTGGTCATGGCCGCGGGTGTCATTGCTGGAGTGGCCACTTTTTCG CAGTCGAATCATCAGATGTTGGAAGAGTCTAAGGCTTTTATACCGACTTGA |
| Gene | >Ophcf2|05573 ATGGCGCCCAGCCTGGCTTTCTTCTACTCGGGAGGGGAAGAGCGTCATGCTGCCGTCTTTATTCGTGATTTGAGG GATCCGACGCCGGCGCAGAGGATGACTCTCTCCGTCATTGCAGTCTATATCCTCGCCATCGCTATCCTATGGAAC GTTCCTTACCTACGAATCTCCCTCTGGCCCTTTAAAGTACGCCCTCCCCTTTCCCCCCCGAGATTCGCAAGCTCC ACCCCAGCTAACGACGACCCAGATGCTCGTCATCGCCTTCCACGAATTCGGCCACGCCATAACCGCCATCCTGAC AGGCGGCCGCGTCGATTCCATCTCCCTCGATCCGCGCGAGGGGGGCGTGACGCACCTCCGCGGCGGAATCAGCTT CCTGACTTTACCGGCCGGCTACCTCGGGTCCTCACTCATCGGCGCGCTGCTCATCTTCTGCGGCTTCAACATCGT GGCTTCCAAAGTGGTCAGCCTCGTGCTGGGGTTGTGTTTTCTGGCGACGCTTTGGTGGGGGAAGCGCGACTGGTT GACGATTGTTACGGTTCTCATGGCTGTGGGCTTGTTGGTCGCGTGCTGGTTTATTCGTCATGCCGAAGCGTTGCG CTTCGTCGTGCTCTTCATTGGCGTCATGAGTTCGTTGTATAGCGTGTGGGATATCTGCGATGATTTGGTCCTGCG AAAGGTGAATTCTTCGGATGCCAGTGTCTTTGCCAAGAGGTATGGTGGTTCATCCATCTGTTGGGGGATCCTTTG GGGCATTGTTTCGCTGCTGGTCATGGCCGCGGGTGTCATTGCTGGAGTGGCCACTTTTTCGCAGTCGAATCATCA GATGTTGGAAGAGTCTAAGGCTTTTATACCGACTTGA |