© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|05528 |
| Gene name | |
| Location | scaffold_06:483977..485974 |
| Strand | + |
| Gene length (bp) | 1997 |
| Transcript length (bp) | 1599 |
| Coding sequence length (bp) | 1599 |
| Protein length (aa) | 533 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 7.0E-21 | 74 | 476 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 8.3E-13 | 93 | 236 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 56 | 78 | 22 |
| 2 | 93 | 115 | 22 |
| 3 | 122 | 139 | 17 |
| 4 | 154 | 176 | 22 |
| 5 | 183 | 205 | 22 |
| 6 | 209 | 231 | 22 |
| 7 | 312 | 334 | 22 |
| 8 | 354 | 376 | 22 |
| 9 | 397 | 419 | 22 |
| 10 | 491 | 513 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05528 MAMSVNPAGSGPPPGTVELLAAHGGTGEDGSIVLNPTPSDDPEDPLRWPMWRKCLNYTIIIALSTANFTALSTQP LFWVDMAKDMTKTTLEDLANAQAAQLVGLAVGCIIFMPLATKYGLRSNYIIMNMFACAASWWSAYMNTVPELYGS NFLFGIAGSINQTTIAMTINDIWFVHQRGTANGMFFLGTTVGAFLVPIAAGLQSIRDGWRLSYASLAIALTVLLV ITIIALEETKFIRPLQTEMTIQDKDAMFKLESFESELARGPSNEKLHIPRNKRGCFVFGFLRRAKLQFITKSDES IWKVLYSPLKSWWFPHVLFASIELGSSICWLVTMGSMSSILFSAPPYNFDAAGLGYMTLGPFVGAVLGSIYGGYL TDKAIIWLSKRNKGWFEPEMRLWLYPLPALTMAGGLILFGISAARGMHFIVPSVGGALFGFSFGAISDIATGIVI DSFPDIVPQTFVVLTFLRNVISMASPFSVVPWFDSMGASNMFIMSGCLSLAINLLALPMGIWGKKSRAAVAGRYY HLTATVA* |
| Coding | >Ophcf2|05528 ATGGCCATGAGCGTGAATCCGGCTGGGTCCGGGCCTCCGCCTGGGACGGTTGAACTGCTGGCGGCGCATGGAGGC ACCGGCGAGGATGGAAGCATCGTCCTCAACCCTACGCCTTCGGATGACCCGGAGGATCCTCTGAGATGGCCCATG TGGCGCAAGTGTCTCAACTATACCATCATCATCGCCTTGTCGACAGCCAACTTCACCGCCCTCTCAACTCAGCCT CTCTTCTGGGTCGACATGGCCAAGGACATGACCAAGACAACTCTCGAGGATCTAGCCAACGCTCAGGCCGCCCAA CTCGTCGGCCTCGCCGTTGGCTGCATCATCTTCATGCCCCTGGCCACCAAGTACGGGCTTCGATCGAACTACATC ATCATGAACATGTTCGCCTGTGCTGCGTCCTGGTGGTCTGCTTACATGAATACCGTCCCCGAGCTGTACGGTTCG AATTTCCTCTTCGGCATCGCCGGCTCCATCAATCAGACCACCATTGCCATGACTATCAACGACATCTGGTTCGTT CATCAACGAGGCACCGCCAATGGCATGTTCTTTCTCGGCACCACGGTTGGCGCCTTTCTCGTCCCCATTGCCGCC GGCCTCCAGAGCATCAGAGACGGCTGGCGTCTCTCTTACGCATCGCTGGCGATAGCCCTTACCGTTCTTCTAGTC ATAACCATAATAGCCCTCGAGGAAACCAAGTTCATCCGTCCGCTGCAGACTGAAATGACCATACAAGACAAAGAC GCCATGTTCAAACTCGAATCGTTCGAATCCGAGCTCGCCCGGGGACCCTCAAACGAGAAGCTACACATACCCAGA AATAAAAGGGGCTGTTTCGTCTTCGGCTTCCTCCGCCGAGCCAAACTCCAGTTCATCACCAAGTCGGACGAGTCC ATCTGGAAGGTCCTCTACTCGCCCCTCAAGTCCTGGTGGTTCCCGCATGTCCTCTTCGCCTCCATAGAGCTGGGG TCGAGCATCTGCTGGCTCGTCACCATGGGATCCATGAGCTCCATTCTCTTCTCGGCTCCGCCCTACAACTTTGAC GCCGCTGGTCTGGGATACATGACTCTCGGCCCTTTTGTCGGCGCTGTTCTCGGCTCTATATACGGCGGCTATCTG ACGGACAAGGCCATCATCTGGCTGTCCAAGCGGAACAAGGGCTGGTTCGAGCCTGAGATGCGTCTCTGGTTGTAT CCTCTGCCGGCTCTGACCATGGCCGGAGGCTTGATTCTCTTCGGCATCTCGGCCGCAAGGGGCATGCATTTCATC GTTCCCAGCGTCGGAGGAGCCCTCTTCGGCTTCAGCTTCGGCGCCATCTCCGACATCGCCACTGGCATCGTCATC GACTCCTTCCCAGACATCGTCCCCCAAACTTTCGTCGTCCTGACCTTCCTCCGCAACGTCATCAGCATGGCCAGC CCCTTTTCCGTCGTGCCCTGGTTTGATTCCATGGGCGCCAGCAACATGTTCATCATGTCTGGCTGTCTCAGTCTC GCCATCAACCTGCTCGCTCTGCCAATGGGCATCTGGGGCAAGAAGAGCAGGGCTGCGGTAGCTGGTCGCTACTAT CACTTGACCGCTACGGTGGCATGA |
| Transcript | >Ophcf2|05528 ATGGCCATGAGCGTGAATCCGGCTGGGTCCGGGCCTCCGCCTGGGACGGTTGAACTGCTGGCGGCGCATGGAGGC ACCGGCGAGGATGGAAGCATCGTCCTCAACCCTACGCCTTCGGATGACCCGGAGGATCCTCTGAGATGGCCCATG TGGCGCAAGTGTCTCAACTATACCATCATCATCGCCTTGTCGACAGCCAACTTCACCGCCCTCTCAACTCAGCCT CTCTTCTGGGTCGACATGGCCAAGGACATGACCAAGACAACTCTCGAGGATCTAGCCAACGCTCAGGCCGCCCAA CTCGTCGGCCTCGCCGTTGGCTGCATCATCTTCATGCCCCTGGCCACCAAGTACGGGCTTCGATCGAACTACATC ATCATGAACATGTTCGCCTGTGCTGCGTCCTGGTGGTCTGCTTACATGAATACCGTCCCCGAGCTGTACGGTTCG AATTTCCTCTTCGGCATCGCCGGCTCCATCAATCAGACCACCATTGCCATGACTATCAACGACATCTGGTTCGTT CATCAACGAGGCACCGCCAATGGCATGTTCTTTCTCGGCACCACGGTTGGCGCCTTTCTCGTCCCCATTGCCGCC GGCCTCCAGAGCATCAGAGACGGCTGGCGTCTCTCTTACGCATCGCTGGCGATAGCCCTTACCGTTCTTCTAGTC ATAACCATAATAGCCCTCGAGGAAACCAAGTTCATCCGTCCGCTGCAGACTGAAATGACCATACAAGACAAAGAC GCCATGTTCAAACTCGAATCGTTCGAATCCGAGCTCGCCCGGGGACCCTCAAACGAGAAGCTACACATACCCAGA AATAAAAGGGGCTGTTTCGTCTTCGGCTTCCTCCGCCGAGCCAAACTCCAGTTCATCACCAAGTCGGACGAGTCC ATCTGGAAGGTCCTCTACTCGCCCCTCAAGTCCTGGTGGTTCCCGCATGTCCTCTTCGCCTCCATAGAGCTGGGG TCGAGCATCTGCTGGCTCGTCACCATGGGATCCATGAGCTCCATTCTCTTCTCGGCTCCGCCCTACAACTTTGAC GCCGCTGGTCTGGGATACATGACTCTCGGCCCTTTTGTCGGCGCTGTTCTCGGCTCTATATACGGCGGCTATCTG ACGGACAAGGCCATCATCTGGCTGTCCAAGCGGAACAAGGGCTGGTTCGAGCCTGAGATGCGTCTCTGGTTGTAT CCTCTGCCGGCTCTGACCATGGCCGGAGGCTTGATTCTCTTCGGCATCTCGGCCGCAAGGGGCATGCATTTCATC GTTCCCAGCGTCGGAGGAGCCCTCTTCGGCTTCAGCTTCGGCGCCATCTCCGACATCGCCACTGGCATCGTCATC GACTCCTTCCCAGACATCGTCCCCCAAACTTTCGTCGTCCTGACCTTCCTCCGCAACGTCATCAGCATGGCCAGC CCCTTTTCCGTCGTGCCCTGGTTTGATTCCATGGGCGCCAGCAACATGTTCATCATGTCTGGCTGTCTCAGTCTC GCCATCAACCTGCTCGCTCTGCCAATGGGCATCTGGGGCAAGAAGAGCAGGGCTGCGGTAGCTGGTCGCTACTAT CACTTGACCGCTACGGTGGCATGA |
| Gene | >Ophcf2|05528 ATGGCCATGAGCGTGAATCCGGCTGGGTCCGGGCCTCCGCCTGGGACGGTTGAACTGCTGGCGGGTGCGTTGTTT GCCGAGTTGGCGCCGTTCGAGCTGATGGGTTTGTCTCTTCAGCGCATGGAGGCACCGGCGAGGATGGAAGCATCG TCCTCAACCCTACGCCTTCGGATGACCCGGAGGATCCTCTGGTTCGTCATTTTTTTTATTTTTTTTTTATTTTTT TATTTTTTTTTTCAATCTGACTTGTAATTGTTGTTGCTCTTCAACTCACACACAAGTGTATAGAGATGGCCCATG TGGCGCAAGTGTCTCAACTATACCATCATCATCGCCTTGTCGACAGCCAACTTCACCGCGTAAGTCGGCTCAGTA CAAATAACCAACATGTCGCTGACAATAGCATAAAGCCTCTCAACTCAGCCTCTCTTCTGGGTCGACATGGCCAAG GACATGACCAAGACAACTCTCGAGGATCTAGCCAACGCTCAGGCCGCCCAACTCGTCGGCCTCGCCGTTGGCTGC ATCATCTTCATGCCCCTGGCCACCAAGTACGGGCTTCGATCGAACTACATCATCATGAACATGTTCGCCTGTGCT GCGTCCTGGTGGTCTGCTTACATGAATACCGTCCCCGAGCTGTACGGTTCGAATTTCCTCTTCGGCATCGCCGGC TCCATCAATCAGACCACCATTGCCATGACTGTTCGTTGCTGCTGTTCCTTTCTTCTTTAACCAAACCAACAAGAT GATTCTCCTCGACTGACAACTCTTAGATCAACGACATCTGGTTCGTTCATCAACGAGGCACCGCCAATGGCATGT TCTTTCTCGGCACCACGGTTGGCGCCTTTCTCGTCCCCATTGCCGCCGGCCTCCAGAGCATCAGAGACGGCTGGC GTCTCTCTTACGCATCGCTGGCGATAGCCCTTACCGTTCTTCTAGTCATAACCATAATAGCCCTCGAGGAAACCA AGTTCATCCGTCCGCTGCAGACTGAAATGACCATACAAGACAAAGACGCCATGTTCAAACTCGAATCGTTCGAAT CCGAGCTCGCCCGGGGACCCTCAAACGAGAAGCTACACATACCCAGAAATAAAAGGGGCTGTTTCGTCTTCGGCT TCCTCCGCCGAGCCAAACTCCAGTTCATCACCAAGTCGGACGAGTCCATCTGGAAGGTCCTCTACTCGCCCCTCA AGTCCTGGTGGTTCCCGCATGTCCTCTTCGCCTCCATAGAGCTGGGGTCGAGCATCTGCTGGCTCGTCACCATGG GATCCATGAGCTCCATTCTCTTCTCGGCTCCGCCCTACAACTTTGACGCCGCTGGTCTGGGATACATGACTCTCG GCCCTTTTGTCGGCGCTGTTCTCGGCTCTATATACGGCGGCTATCTGACGGACAAGGCCATCATCTGGCTGTCCA AGCGGAACAAGGGCTGGTTCGAGCCTGAGATGCGTCTCTGGTTGTATCCTCTGCCGGCTCTGACCATGGCCGGAG GCTTGATTCTCTTCGGCATCTCGGCCGCAAGGGTGAGAGTTCTTGCTTCAGCCATTCTTCTCTCCTTTAATGCTG GTAATCTCATGAATATCCAGGGCATGCATTTCATCGTTCCCAGCGTCGGAGGAGCCCTCTTCGGCTTCAGCTTCG GCGCCATCTCCGACATCGCCACTGGCATCGTCATCGACTCCTTCCCAGACGTCCGTCTCAAAACCCCATTCACAA CATCCATCGTCCGCTGAAGAAATCTAACGACCCAGCAGATCGTCCCCCAAACTTTCGTCGTCCTGACCTTCCTCC GCAACGTCATCAGCATGGCCAGCCCCTTTTCCGTCGTGCCCTGGTTTGATTCCATGGGCGCCAGCAACATGTTCA TCATGTCTGGCTGTCTCAGTCTCGCCATCAACCTGCTCGCTCTGCCAATGGGCATCTGGGGCAAGAAGAGCAGGG CTGCGGTAGCTGGTCGCTACTATCACTTGACCGCTACGGTGGCATGA |