Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05513
Gene name
Locationscaffold_06:445099..446816
Strand+
Gene length (bp)1717
Transcript length (bp)1575
Coding sequence length (bp)1575
Protein length (aa) 525

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07690 MFS_1 Major Facilitator Superfamily 1.2E-12 69 399
PF00083 Sugar_tr Sugar (and other) transporter 1.4E-09 103 512

GO

GO Term Description Terminal node
GO:0022857 transmembrane transporter activity Yes
GO:0055085 transmembrane transport Yes
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0051179 localization No
GO:0008150 biological_process No
GO:0031224 intrinsic component of membrane No
GO:0006810 transport No
GO:0009987 cellular process No
GO:0003674 molecular_function No
GO:0005215 transporter activity No
GO:0110165 cellular anatomical entity No
GO:0051234 establishment of localization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 44 0.45

Transmembrane Domains

Domain # Start End Length
1 67 89 22
2 104 123 19
3 136 158 22
4 232 254 22
5 339 361 22
6 376 398 22
7 410 428 18
8 432 454 22
9 467 489 22
10 494 516 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 9.77 4.05 15.49
Alive In ants, during behavior modification 4.28 1.22 7.33
Dead In ants, recently dead 11.82 4.73 18.91

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.003749 yes
Alive Dead 0.000238 yes
Dead Fungus 0.507340 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05513
MGVENAVDEVVTSPHDPPIYSSSIELASDGDSAIIPKGAIDPVYEAKARLLNRAIRDMGMGWYQWQLFVVVGFGW
ASDNLWPVVTALIFTPIAQEFHPDRPPLFTLAQNIGLLAGAAFWGFGCDVFGRKLGFNLTLGLTAFWGLVAASAP
SFAAIGFFACMWSFGVGGNLPVDSAVFLEFLPQSHQYLLTVLSIDWSLAQVIANLIAWPLLTKFTCSQEQAQSCS
RRDNMGWRYFTLAMGGLTLIMFITRFVFFTIYESPKYLVGKGRDADAVRVLHEVARRNGTTVTLTLEDLKACEPD
GYVARTDTSAAVKRYMEKVDTQHVKALFAGRRLATSTGLIMAIWALIGLGYPLYNAFLPFIQATRGVQFQDGSNN
ITYRNSLIIAVLGVPGAILGGFLVELPRMGRKGTLSLFTLLTGVFLFCSTTAANSTALLGWNCAFNFCSNVMYAV
LYGYTPEIFPTPQRGTGNALCASCNRVFGIMAPIVAMFANLQTAAPVYGSGALFLSAGALVLFLPFESQGREAL*
Coding >Ophcf2|05513
ATGGGTGTTGAGAACGCTGTCGACGAGGTCGTCACCTCGCCCCACGACCCCCCAATTTACAGCAGCAGCATCGAG
CTGGCCTCGGATGGGGACTCGGCCATTATCCCCAAGGGCGCCATCGATCCCGTTTACGAGGCCAAGGCTCGACTG
CTCAACCGCGCCATCCGTGATATGGGCATGGGATGGTATCAATGGCAGCTCTTCGTCGTCGTCGGCTTCGGCTGG
GCCAGCGACAATCTGTGGCCCGTCGTCACCGCCCTCATCTTCACCCCCATCGCTCAGGAATTCCATCCGGACCGG
CCACCGCTCTTTACGCTGGCCCAAAACATCGGCCTCCTCGCCGGCGCCGCCTTTTGGGGCTTCGGCTGTGACGTC
TTCGGACGCAAGCTCGGCTTCAACCTGACGCTGGGCCTCACCGCATTCTGGGGTCTCGTGGCTGCCAGCGCGCCC
AGCTTCGCCGCCATTGGCTTCTTTGCCTGCATGTGGTCGTTTGGCGTCGGAGGCAACCTGCCCGTCGACTCGGCC
GTCTTTCTCGAGTTCCTGCCGCAGAGCCACCAGTACCTGCTGACGGTGCTGTCCATTGACTGGTCCCTGGCCCAG
GTCATTGCCAATCTCATCGCCTGGCCACTCCTTACCAAGTTCACGTGCTCCCAGGAACAGGCCCAGTCGTGCTCA
CGTCGCGACAACATGGGATGGCGGTACTTTACCCTGGCCATGGGCGGCCTGACCCTCATCATGTTCATCACCCGC
TTCGTCTTCTTCACCATTTACGAGTCTCCCAAGTATTTGGTTGGCAAGGGCCGCGACGCTGACGCCGTCCGCGTC
CTGCACGAGGTGGCCCGGCGCAATGGCACGACGGTGACGCTGACGCTGGAGGACCTAAAGGCCTGCGAGCCCGAC
GGCTACGTGGCCCGGACGGACACGTCGGCGGCTGTCAAGAGGTACATGGAAAAGGTGGACACGCAGCACGTCAAG
GCCCTGTTCGCGGGCCGCCGTTTGGCCACGAGCACGGGCCTCATCATGGCCATCTGGGCCCTCATCGGCCTCGGC
TACCCCCTCTACAACGCCTTCCTGCCATTCATCCAGGCCACTCGGGGCGTCCAGTTCCAGGACGGGAGCAACAAC
ATCACGTATCGCAACAGCCTCATCATCGCCGTCCTCGGAGTTCCGGGCGCCATCCTCGGCGGCTTCTTGGTGGAG
CTACCACGCATGGGCCGCAAGGGCACCCTCTCCCTCTTCACCCTCCTCACAGGCGTCTTTCTCTTTTGCTCGACG
ACGGCCGCCAACAGTACCGCCCTTCTCGGCTGGAACTGCGCCTTTAACTTTTGCAGCAACGTCATGTACGCCGTC
CTCTACGGCTACACGCCCGAGATCTTCCCCACGCCCCAGCGCGGCACGGGCAACGCGCTGTGCGCCTCGTGCAAC
CGCGTCTTTGGCATCATGGCTCCCATTGTAGCCATGTTTGCCAACCTGCAGACGGCGGCCCCGGTCTACGGTAGC
GGCGCGCTGTTTCTCTCCGCAGGCGCCCTCGTCTTGTTTCTTCCGTTTGAGTCTCAAGGGAGAGAGGCCCTGTGA
Transcript >Ophcf2|05513
ATGGGTGTTGAGAACGCTGTCGACGAGGTCGTCACCTCGCCCCACGACCCCCCAATTTACAGCAGCAGCATCGAG
CTGGCCTCGGATGGGGACTCGGCCATTATCCCCAAGGGCGCCATCGATCCCGTTTACGAGGCCAAGGCTCGACTG
CTCAACCGCGCCATCCGTGATATGGGCATGGGATGGTATCAATGGCAGCTCTTCGTCGTCGTCGGCTTCGGCTGG
GCCAGCGACAATCTGTGGCCCGTCGTCACCGCCCTCATCTTCACCCCCATCGCTCAGGAATTCCATCCGGACCGG
CCACCGCTCTTTACGCTGGCCCAAAACATCGGCCTCCTCGCCGGCGCCGCCTTTTGGGGCTTCGGCTGTGACGTC
TTCGGACGCAAGCTCGGCTTCAACCTGACGCTGGGCCTCACCGCATTCTGGGGTCTCGTGGCTGCCAGCGCGCCC
AGCTTCGCCGCCATTGGCTTCTTTGCCTGCATGTGGTCGTTTGGCGTCGGAGGCAACCTGCCCGTCGACTCGGCC
GTCTTTCTCGAGTTCCTGCCGCAGAGCCACCAGTACCTGCTGACGGTGCTGTCCATTGACTGGTCCCTGGCCCAG
GTCATTGCCAATCTCATCGCCTGGCCACTCCTTACCAAGTTCACGTGCTCCCAGGAACAGGCCCAGTCGTGCTCA
CGTCGCGACAACATGGGATGGCGGTACTTTACCCTGGCCATGGGCGGCCTGACCCTCATCATGTTCATCACCCGC
TTCGTCTTCTTCACCATTTACGAGTCTCCCAAGTATTTGGTTGGCAAGGGCCGCGACGCTGACGCCGTCCGCGTC
CTGCACGAGGTGGCCCGGCGCAATGGCACGACGGTGACGCTGACGCTGGAGGACCTAAAGGCCTGCGAGCCCGAC
GGCTACGTGGCCCGGACGGACACGTCGGCGGCTGTCAAGAGGTACATGGAAAAGGTGGACACGCAGCACGTCAAG
GCCCTGTTCGCGGGCCGCCGTTTGGCCACGAGCACGGGCCTCATCATGGCCATCTGGGCCCTCATCGGCCTCGGC
TACCCCCTCTACAACGCCTTCCTGCCATTCATCCAGGCCACTCGGGGCGTCCAGTTCCAGGACGGGAGCAACAAC
ATCACGTATCGCAACAGCCTCATCATCGCCGTCCTCGGAGTTCCGGGCGCCATCCTCGGCGGCTTCTTGGTGGAG
CTACCACGCATGGGCCGCAAGGGCACCCTCTCCCTCTTCACCCTCCTCACAGGCGTCTTTCTCTTTTGCTCGACG
ACGGCCGCCAACAGTACCGCCCTTCTCGGCTGGAACTGCGCCTTTAACTTTTGCAGCAACGTCATGTACGCCGTC
CTCTACGGCTACACGCCCGAGATCTTCCCCACGCCCCAGCGCGGCACGGGCAACGCGCTGTGCGCCTCGTGCAAC
CGCGTCTTTGGCATCATGGCTCCCATTGTAGCCATGTTTGCCAACCTGCAGACGGCGGCCCCGGTCTACGGTAGC
GGCGCGCTGTTTCTCTCCGCAGGCGCCCTCGTCTTGTTTCTTCCGTTTGAGTCTCAAGGGAGAGAGGCCCTGTGA
Gene >Ophcf2|05513
ATGGGTGTTGAGAACGCTGTCGACGAGGTCGTCACCTCGCCCCACGACCCCCCAATTTACAGCAGCAGCATCGAG
CTGGCCTCGGATGGGGACTCGGCCATTATCCCCAAGGGCGCCATCGATCCCGTTTACGAGGCCAAGGCTCGACTG
CTCAACCGCGCCGTGCGTCTCTTGTTCCCCCCCCCCACGCTCGCCCCGCCATCCCGCCCTCATCCCGCCCCTGCT
GACGGTACCCTTCAGATCCGTGATATGGGCATGGGATGGTATCAATGGCAGCTCTTCGTCGTCGTCGGCTTCGGC
TGGGCCAGCGACAATCTGTGGCCCGTCGTCACCGCCCTCATCTTCACCCCCATCGCTCAGGAATTCCATCCGGAC
CGGCCACCGCTCTTTACGCTGGCCCAAAACATCGGCCTCCTCGCCGGCGCCGCCTTTTGGGGCTTCGGCTGTGAC
GTCTTCGGACGCAAGCTCGGCTTCAACCTGACGCTGGGCCTCACCGCATTCTGGGGTCTCGTGGCTGCCAGCGCG
CCCAGCTTCGCCGCCATTGGCTTCTTTGCCTGCATGTGGTCGTTTGGCGTCGGAGGCAACCTGCCCGTCGACTCG
GCCGTCTTTCTCGAGTTCCTGCCGCAGAGCCACCAGTACCTGCTGACGGTGCTGTCCATTGACTGGTCCCTGGCC
CAGGTCATTGCCAATCTCATCGCCTGGCCACTCCTTACCAAGTTCACGTGCTCCCAGGAACAGGCCCAGTCGTGC
TCACGTCGCGACAACATGGGATGGCGGTACTTTACCCTGGCCATGGGCGGCCTGACCCTCATCATGTTCATCACC
CGCTTCGTCTTCTTCACCATTTACGAGTCTCCCAAGTATTTGGTTGGCAAGGGCCGCGACGCTGACGCCGTCCGC
GTCCTGCACGAGGTGGCCCGGCGCAATGGCACGACGGTGACGCTGACGCTGGAGGACCTAAAGGCCTGCGAGCCC
GACGGCTACGTGGCCCGGACGGACACGTCGGCGGCTGTCAAGAGGTACATGGAAAAGGTGGACACGCAGCACGTC
AAGGCCCTGTTCGCGGGCCGCCGTTTGGCCACGAGCACGGGCCTCATCATGGCCATCTGGGCCCTCATCGGCCTC
GGCTACCCCCTCTACAACGCCTTCCTGCCATTCATCCAGGCCACTCGGGGCGTCCAGTTCCAGGACGGGAGCAAC
AACATCACGTATCGCAACAGCCTCATCATCGCCGTCCTCGGAGTTCCGGGCGCCATCCTCGGCGGCTTCTTGGTG
GAGCTACCACGCATGGGCCGCAAGGGCACCCTCTCCCTCTTCACCCTCCTCACAGGCGTCTTTCTCTTTTGCTCG
ACGACGGCCGCCAACAGTACCGCCCTTCTCGGCTGGAACTGCGCCTTTAACTTTTGCAGCAACGTCATGTACGCC
GTCCTCTACGGCTACACGCCCGAGATCTTCCCCACGCCCCAGCGCGGCACGGGCAACGCGCTGTGCGCCTCGTGC
AACCGCGTCTTTGGCATCATGGCTGTGAGTCGCCGCGTCTTGGAATGACGGGAGACAGTTGAGAGACTGACAATT
CTTCCCCTTCCAGCCCATTGTAGCCATGTTTGCCAACCTGCAGACGGCGGCCCCGGTCTACGGTAGCGGCGCGCT
GTTTCTCTCCGCAGGCGCCCTCGTCTTGTTTCTTCCGTTTGAGTCTCAAGGGAGAGAGGCCCTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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