Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05511
Gene name
Locationscaffold_06:441363..442407
Strand-
Gene length (bp)1044
Transcript length (bp)984
Coding sequence length (bp)984
Protein length (aa) 328

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

Domain # Start End Length
1 279 301 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 61.94 33.95 89.93
Alive In ants, during behavior modification 147.21 80.54 213.89
Dead In ants, recently dead 170.40 95.22 245.58

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.430809 no
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05511
MRSLLTLVLLLVAAASGRSYVQPSDAILTPRDAVLLPYVSFESPDGLLIRRQAGRQAAGAVQLTPDKGANNDTNF
DRAANAVCIEALKKLPKSTNPSGNCLCYNLPSLNTETGSFTADLRVFRVSEPRDNFAGIAPGEINVGVQYDGATV
TLASPQQMQQTLSQPIARRQAQARSEPEIIQSYMFIGQINPDRMNNQLALVDLEPLVTPKSFKLSAKDKTGGTVS
TEVSFNEASFLIGVFADQVVQSDFGAAQAAVDDRKAAVRNGTAAFVLPGVQIMIFPVGLIITSVWVFIGTTAYGI
GTYQRALYAKAWRRRTRSAAQAVGRSI*
Coding >Ophcf2|05511
ATGCGAAGCCTCCTGACCCTCGTCCTCTTGCTGGTAGCCGCAGCATCGGGCCGCTCCTACGTCCAGCCGTCGGAC
GCGATCCTGACGCCTCGAGATGCCGTCTTGCTGCCCTACGTCTCGTTCGAGTCTCCCGATGGGCTCCTGATTCGA
CGCCAGGCCGGACGACAAGCAGCCGGCGCCGTTCAACTCACGCCCGACAAGGGAGCCAATAACGATACGAACTTT
GACAGGGCCGCCAATGCCGTCTGTATCGAGGCCCTCAAGAAGTTGCCCAAGAGCACCAATCCGTCGGGCAACTGC
CTGTGCTACAACTTGCCGTCGCTCAACACCGAAACGGGCAGCTTCACCGCTGATCTCCGCGTCTTTCGCGTCTCC
GAGCCTCGCGACAACTTTGCCGGCATCGCTCCGGGCGAGATCAACGTCGGCGTCCAGTACGACGGCGCCACCGTC
ACCTTGGCCTCGCCCCAGCAGATGCAGCAGACGCTCTCCCAACCCATTGCTCGTCGACAGGCCCAGGCCCGGTCT
GAGCCCGAAATCATCCAATCCTACATGTTTATCGGCCAGATCAACCCCGATCGAATGAACAATCAGCTTGCCTTG
GTCGACCTTGAGCCCCTTGTCACGCCCAAGTCGTTCAAGCTCTCGGCCAAAGACAAGACGGGAGGCACCGTCAGC
ACCGAAGTCTCGTTCAACGAGGCCTCGTTTCTCATCGGCGTCTTCGCCGACCAGGTGGTTCAGTCCGACTTCGGC
GCCGCCCAGGCCGCTGTGGACGATAGAAAGGCAGCGGTCCGCAACGGCACGGCGGCCTTTGTGCTACCGGGCGTG
CAGATCATGATCTTCCCCGTCGGCCTCATCATCACCAGCGTCTGGGTTTTCATCGGCACTACCGCCTACGGTATT
GGCACTTACCAGCGGGCTCTGTACGCAAAGGCCTGGCGCCGGCGGACGAGGTCGGCGGCCCAGGCGGTTGGCAGG
TCCATTTGA
Transcript >Ophcf2|05511
ATGCGAAGCCTCCTGACCCTCGTCCTCTTGCTGGTAGCCGCAGCATCGGGCCGCTCCTACGTCCAGCCGTCGGAC
GCGATCCTGACGCCTCGAGATGCCGTCTTGCTGCCCTACGTCTCGTTCGAGTCTCCCGATGGGCTCCTGATTCGA
CGCCAGGCCGGACGACAAGCAGCCGGCGCCGTTCAACTCACGCCCGACAAGGGAGCCAATAACGATACGAACTTT
GACAGGGCCGCCAATGCCGTCTGTATCGAGGCCCTCAAGAAGTTGCCCAAGAGCACCAATCCGTCGGGCAACTGC
CTGTGCTACAACTTGCCGTCGCTCAACACCGAAACGGGCAGCTTCACCGCTGATCTCCGCGTCTTTCGCGTCTCC
GAGCCTCGCGACAACTTTGCCGGCATCGCTCCGGGCGAGATCAACGTCGGCGTCCAGTACGACGGCGCCACCGTC
ACCTTGGCCTCGCCCCAGCAGATGCAGCAGACGCTCTCCCAACCCATTGCTCGTCGACAGGCCCAGGCCCGGTCT
GAGCCCGAAATCATCCAATCCTACATGTTTATCGGCCAGATCAACCCCGATCGAATGAACAATCAGCTTGCCTTG
GTCGACCTTGAGCCCCTTGTCACGCCCAAGTCGTTCAAGCTCTCGGCCAAAGACAAGACGGGAGGCACCGTCAGC
ACCGAAGTCTCGTTCAACGAGGCCTCGTTTCTCATCGGCGTCTTCGCCGACCAGGTGGTTCAGTCCGACTTCGGC
GCCGCCCAGGCCGCTGTGGACGATAGAAAGGCAGCGGTCCGCAACGGCACGGCGGCCTTTGTGCTACCGGGCGTG
CAGATCATGATCTTCCCCGTCGGCCTCATCATCACCAGCGTCTGGGTTTTCATCGGCACTACCGCCTACGGTATT
GGCACTTACCAGCGGGCTCTGTACGCAAAGGCCTGGCGCCGGCGGACGAGGTCGGCGGCCCAGGCGGTTGGCAGG
TCCATTTGA
Gene >Ophcf2|05511
ATGCGAAGCCTCCTGACCCTCGTCCTCTTGCTGGTAGCCGCAGCATCGGGCCGCTCCTACGTCCAGCCGTCGGAC
GCGATCCTGACGCCTCGAGATGCCGTCTTGCTGCCCTACGTCTCGTTCGAGTCTCCCGATGGGCTCCTGATTCGA
CGCCAGGCCGGACGACAAGCAGCCGGCGCCGTTCAACTCACGCCCGACAAGGGAGCCAATAACGATACGAACTTT
GACAGGGCCGCCAATGCCGTCTGTATCGAGGCCCTCAAGAAGTTGCCCAAGAGCACCAATCCGTCGGGCAACTGC
CTGTGCTACAACTTGCCGTCGCTCAACACCGAAACGGGCAGCTTCACCGCTGATCTCCGCGTCTTTCGCGTCTCC
GAGCCTCGCGACAACTTTGCCGGCATCGCTCCGGGCGAGATCAACGTCGGCGTCCAGTACGACGGCGCCACCGTC
ACCTTGGCCTCGCCCCAGCAGATGCAGCAGACGCTCTCCCAACCCATTGCTCGTCGACAGGCCCAGGCCCGGTCT
GAGCCCGAAATCATCCAATCCTACATGTTTATCGGCCAGATCAACCCCGATCGAATGAACAATCAGCTTGCCTTG
TAAGTTTCGTGTTCTTGGGTGATGAGCTCGAGACAAGCCAACTAATCAATCACCTACAGGGTCGACCTTGAGCCC
CTTGTCACGCCCAAGTCGTTCAAGCTCTCGGCCAAAGACAAGACGGGAGGCACCGTCAGCACCGAAGTCTCGTTC
AACGAGGCCTCGTTTCTCATCGGCGTCTTCGCCGACCAGGTGGTTCAGTCCGACTTCGGCGCCGCCCAGGCCGCT
GTGGACGATAGAAAGGCAGCGGTCCGCAACGGCACGGCGGCCTTTGTGCTACCGGGCGTGCAGATCATGATCTTC
CCCGTCGGCCTCATCATCACCAGCGTCTGGGTTTTCATCGGCACTACCGCCTACGGTATTGGCACTTACCAGCGG
GCTCTGTACGCAAAGGCCTGGCGCCGGCGGACGAGGTCGGCGGCCCAGGCGGTTGGCAGGTCCATTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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