© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05495 |
| Gene name | |
| Location | scaffold_06:343125..343842 |
| Strand | - |
| Gene length (bp) | 717 |
| Transcript length (bp) | 717 |
| Coding sequence length (bp) | 717 |
| Protein length (aa) | 239 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06687 | SUR7 | SUR7/PalI family | 3.0E-14 | 12 | 188 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005886 | plasma membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0016020 | membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 31 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 107 | 129 | 22 |
| 3 | 136 | 158 | 22 |
| 4 | 173 | 195 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05495 MGFGTVVHHVGTLLLLVATILLIVVDVTAPVYPHLAILRVDLGRNVRGSEVTYGSWGWCHRGLGEWDECSRRHIG YNPAQVIHDIDGTRFSRAAENTSKALTRVMVLHGVGTVLCFVAFCLCLGAGVVGSVTGAAVAMLAFIINIVAMAC DFITFGIIKRNVNAHDRSIAHWASGIWCVLVAALFSLLAGLIVLTTCFAGRSKRRRERATPAATTTTTTTTTGKV PFWQRLPLMKRKA* |
| Coding | >Ophcf2|05495 ATGGGCTTCGGCACCGTCGTCCACCACGTCGGCACCCTGCTGCTGCTCGTCGCCACCATCCTCCTAATCGTCGTC GACGTCACCGCCCCCGTCTATCCTCACCTCGCCATCCTCCGCGTCGATCTCGGCCGCAACGTCCGCGGTTCCGAA GTCACCTACGGTAGCTGGGGATGGTGTCACCGCGGTCTGGGCGAGTGGGACGAGTGCTCGCGTCGACACATTGGC TATAACCCGGCTCAGGTGATTCATGATATCGACGGAACTCGCTTCAGCCGCGCGGCCGAGAACACGTCCAAGGCC CTGACGCGCGTCATGGTCTTGCACGGCGTCGGGACGGTCCTGTGCTTCGTCGCCTTTTGTCTCTGCCTCGGCGCC GGTGTCGTCGGATCTGTCACGGGAGCGGCTGTGGCCATGCTGGCTTTCATCATCAACATCGTCGCCATGGCCTGC GACTTTATAACCTTTGGCATCATCAAGAGGAACGTCAACGCACACGATCGAAGCATCGCCCATTGGGCTTCGGGA ATCTGGTGCGTTTTGGTGGCGGCCCTCTTCAGCTTGCTGGCCGGCCTCATCGTTCTCACCACCTGCTTCGCTGGA CGATCAAAGAGACGTCGTGAGAGGGCGACACCAGCGGCGACGACGACGACGACGACGACGACGACGGGCAAGGTT CCGTTTTGGCAACGTCTGCCGTTGATGAAGCGAAAGGCTTAG |
| Transcript | >Ophcf2|05495 ATGGGCTTCGGCACCGTCGTCCACCACGTCGGCACCCTGCTGCTGCTCGTCGCCACCATCCTCCTAATCGTCGTC GACGTCACCGCCCCCGTCTATCCTCACCTCGCCATCCTCCGCGTCGATCTCGGCCGCAACGTCCGCGGTTCCGAA GTCACCTACGGTAGCTGGGGATGGTGTCACCGCGGTCTGGGCGAGTGGGACGAGTGCTCGCGTCGACACATTGGC TATAACCCGGCTCAGGTGATTCATGATATCGACGGAACTCGCTTCAGCCGCGCGGCCGAGAACACGTCCAAGGCC CTGACGCGCGTCATGGTCTTGCACGGCGTCGGGACGGTCCTGTGCTTCGTCGCCTTTTGTCTCTGCCTCGGCGCC GGTGTCGTCGGATCTGTCACGGGAGCGGCTGTGGCCATGCTGGCTTTCATCATCAACATCGTCGCCATGGCCTGC GACTTTATAACCTTTGGCATCATCAAGAGGAACGTCAACGCACACGATCGAAGCATCGCCCATTGGGCTTCGGGA ATCTGGTGCGTTTTGGTGGCGGCCCTCTTCAGCTTGCTGGCCGGCCTCATCGTTCTCACCACCTGCTTCGCTGGA CGATCAAAGAGACGTCGTGAGAGGGCGACACCAGCGGCGACGACGACGACGACGACGACGACGACGGGCAAGGTT CCGTTTTGGCAACGTCTGCCGTTGATGAAGCGAAAGGCTTAG |
| Gene | >Ophcf2|05495 ATGGGCTTCGGCACCGTCGTCCACCACGTCGGCACCCTGCTGCTGCTCGTCGCCACCATCCTCCTAATCGTCGTC GACGTCACCGCCCCCGTCTATCCTCACCTCGCCATCCTCCGCGTCGATCTCGGCCGCAACGTCCGCGGTTCCGAA GTCACCTACGGTAGCTGGGGATGGTGTCACCGCGGTCTGGGCGAGTGGGACGAGTGCTCGCGTCGACACATTGGC TATAACCCGGCTCAGGTGATTCATGATATCGACGGAACTCGCTTCAGCCGCGCGGCCGAGAACACGTCCAAGGCC CTGACGCGCGTCATGGTCTTGCACGGCGTCGGGACGGTCCTGTGCTTCGTCGCCTTTTGTCTCTGCCTCGGCGCC GGTGTCGTCGGATCTGTCACGGGAGCGGCTGTGGCCATGCTGGCTTTCATCATCAACATCGTCGCCATGGCCTGC GACTTTATAACCTTTGGCATCATCAAGAGGAACGTCAACGCACACGATCGAAGCATCGCCCATTGGGCTTCGGGA ATCTGGTGCGTTTTGGTGGCGGCCCTCTTCAGCTTGCTGGCCGGCCTCATCGTTCTCACCACCTGCTTCGCTGGA CGATCAAAGAGACGTCGTGAGAGGGCGACACCAGCGGCGACGACGACGACGACGACGACGACGACGGGCAAGGTT CCGTTTTGGCAACGTCTGCCGTTGATGAAGCGAAAGGCTTAG |