Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05492
Gene name
Locationscaffold_06:338473..339148
Strand+
Gene length (bp)675
Transcript length (bp)549
Coding sequence length (bp)549
Protein length (aa) 183

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04061 ORMDL ORMDL family 6.5E-58 38 172

GO

GO Term Description Terminal node
GO:0005789 endoplasmic reticulum membrane Yes
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0031090 organelle membrane No
GO:0016020 membrane No
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 49 71 22
2 127 144 17
3 148 167 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05492
MDDTDSGSRRRRSSSILQVYHEPPETLEQISDQAALPNLNANWTNAKGAWTIHIVVIVMLKIFYDVIPGVSNETS
WTLTNMTYMFGSYLMFHYVRGVPFEFNSGAFDNLNMWEQIDNGAQYTPTKKFLLGVPIVLFLLSTHYTHYDLVYF
VINFLAVLGVIIPKLPFSHRMRFGLFSGPPDV*
Coding >Ophcf2|05492
ATGGACGATACAGACAGCGGTTCCCGTAGGAGGAGATCCAGCAGCATCCTTCAGGTCTACCATGAGCCCCCCGAG
ACGCTCGAGCAGATCAGCGACCAGGCGGCGCTGCCCAACCTCAACGCCAACTGGACAAACGCCAAAGGTGCCTGG
ACGATTCACATCGTCGTCATCGTCATGCTCAAAATCTTTTACGACGTGATCCCCGGCGTGTCCAACGAGACGTCG
TGGACGCTCACAAACATGACGTACATGTTCGGCTCCTATCTCATGTTTCACTACGTCCGCGGCGTCCCGTTCGAG
TTCAACAGTGGGGCCTTTGACAACCTCAACATGTGGGAGCAGATCGACAATGGCGCCCAGTACACGCCCACCAAG
AAGTTTCTGCTGGGCGTGCCCATTGTACTGTTTCTGCTGAGCACCCACTACACCCACTACGACCTGGTGTACTTT
GTCATAAACTTTCTCGCCGTCCTGGGTGTCATCATCCCCAAGCTTCCGTTTAGCCACAGGATGCGATTTGGTCTG
TTCTCGGGGCCGCCAGATGTGTAG
Transcript >Ophcf2|05492
ATGGACGATACAGACAGCGGTTCCCGTAGGAGGAGATCCAGCAGCATCCTTCAGGTCTACCATGAGCCCCCCGAG
ACGCTCGAGCAGATCAGCGACCAGGCGGCGCTGCCCAACCTCAACGCCAACTGGACAAACGCCAAAGGTGCCTGG
ACGATTCACATCGTCGTCATCGTCATGCTCAAAATCTTTTACGACGTGATCCCCGGCGTGTCCAACGAGACGTCG
TGGACGCTCACAAACATGACGTACATGTTCGGCTCCTATCTCATGTTTCACTACGTCCGCGGCGTCCCGTTCGAG
TTCAACAGTGGGGCCTTTGACAACCTCAACATGTGGGAGCAGATCGACAATGGCGCCCAGTACACGCCCACCAAG
AAGTTTCTGCTGGGCGTGCCCATTGTACTGTTTCTGCTGAGCACCCACTACACCCACTACGACCTGGTGTACTTT
GTCATAAACTTTCTCGCCGTCCTGGGTGTCATCATCCCCAAGCTTCCGTTTAGCCACAGGATGCGATTTGGTCTG
TTCTCGGGGCCGCCAGATGTGTAG
Gene >Ophcf2|05492
ATGGACGATACAGACAGCGGTTCCCGTAGGAGGAGATCCAGCAGCATCCTTCAGGTCTACCATGAGCCCCCCGAG
ACGCTCGAGCAGATCAGCGACCAGGCGGCGCTGCCCAACCTCAACGCCAACTGGACAAACGCCAAAGGTGAGTCG
TCCGGGTCTGACGGGGGAGAGAGGGGCTGGTGGTCGGCTGACTCGCCGGTCGAGGTGCCTGGACGATTCACATCG
TCGTCATCGTCATGCTCAAAATCTTTTACGACGTGATCCCCGGCGTGTCCAACGAGACGTCGTGGACGCTCACAA
ACATGACGTACATGTTCGGCTCCTATCTCATGTTTCACTACGTCCGCGGCGTCCCGTTCGAGTTCAACAGTGGGG
CCTTTGACAACCTCAACATGTGGGAGCAGATCGACAATGGCGCCCAGTACACGCCCACCAAGAAGTTTCTGCTGG
GCGTGCCCATTGTACTGTTTCTGCTGAGCACCCACTACACCCACTACGACCTGGTGTACTTTGTCATAAACTTTC
TCGCCGTCCTGGGTGTCATCATCCCCAAGCTTCCGTTTGTGCGTCGGCCCTGTGATGGATGCCATCCCACGCCGT
GCTGCCTCGCGTGCTGACCGTCGACAGAGCCACAGGATGCGATTTGGTCTGTTCTCGGGGCCGCCAGATGTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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