Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05474
Gene name
Locationscaffold_06:283998..284793
Strand+
Gene length (bp)795
Transcript length (bp)795
Coding sequence length (bp)795
Protein length (aa) 265

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 16 0.45

Transmembrane Domains

Domain # Start End Length
1 241 263 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 1043.64 473.55 1613.73
Alive In ants, during behavior modification 239.40 112.47 366.34
Dead In ants, recently dead 259.40 135.13 383.67

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.719000 no
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05474
MKSALILSTLTLITAQQQPPCSRECHQVAATESSCSEGKSLSQHATCMCREKPFFKEWTDCRLCLRDDKKEISAD
EFRAYSSVLDSARAALCGPSPTASFQALFTQASAARNKVPQGVVSSSVPSGVSSVGHSRVDAEAEAGAAAGRYTD
GNTYASASGAASAEATGETSAAARAQAEARAGSEGASASAGATAEADGQILSTSTQAGFTAPTDGTRTSSSLSPS
STSLSRGNSTTGLPSVSGASAVTVAGGLVMVVVAAALAI*
Coding >Ophcf2|05474
ATGAAGTCAGCCCTCATCCTCTCAACCCTCACCCTCATCACCGCCCAACAACAACCCCCCTGCTCGCGAGAATGC
CACCAAGTGGCCGCAACCGAGAGCTCATGCAGCGAGGGCAAGTCCCTCTCCCAGCACGCAACCTGCATGTGTCGC
GAGAAGCCCTTCTTCAAAGAATGGACCGACTGCCGGCTCTGCCTCCGCGACGACAAGAAGGAGATCTCGGCGGAT
GAGTTCCGCGCCTACAGCTCCGTCCTCGACTCTGCTCGCGCCGCGCTCTGCGGTCCGTCTCCCACGGCTAGCTTC
CAGGCGCTCTTTACCCAGGCTTCGGCTGCGCGCAATAAGGTTCCTCAGGGGGTGGTGTCGTCTTCTGTGCCTTCT
GGCGTCTCCTCGGTCGGGCATTCGCGTGTCGATGCCGAGGCCGAAGCCGGAGCCGCGGCCGGAAGATACACCGAC
GGCAACACGTACGCCTCGGCCTCCGGAGCCGCCAGCGCCGAAGCCACGGGCGAAACAAGCGCGGCAGCGAGAGCC
CAAGCCGAAGCCCGAGCCGGATCCGAAGGCGCATCAGCGTCCGCGGGGGCAACCGCCGAAGCCGACGGCCAAATC
TTGTCGACTTCAACTCAGGCTGGCTTCACGGCTCCCACGGACGGCACCCGCACTTCGTCCTCTCTCTCGCCTTCT
TCCACGAGTCTTTCTCGCGGGAACTCGACGACCGGGCTGCCGTCTGTTAGCGGGGCTTCTGCTGTGACGGTGGCT
GGGGGGCTTGTCATGGTTGTTGTTGCTGCTGCTCTGGCTATCTGA
Transcript >Ophcf2|05474
ATGAAGTCAGCCCTCATCCTCTCAACCCTCACCCTCATCACCGCCCAACAACAACCCCCCTGCTCGCGAGAATGC
CACCAAGTGGCCGCAACCGAGAGCTCATGCAGCGAGGGCAAGTCCCTCTCCCAGCACGCAACCTGCATGTGTCGC
GAGAAGCCCTTCTTCAAAGAATGGACCGACTGCCGGCTCTGCCTCCGCGACGACAAGAAGGAGATCTCGGCGGAT
GAGTTCCGCGCCTACAGCTCCGTCCTCGACTCTGCTCGCGCCGCGCTCTGCGGTCCGTCTCCCACGGCTAGCTTC
CAGGCGCTCTTTACCCAGGCTTCGGCTGCGCGCAATAAGGTTCCTCAGGGGGTGGTGTCGTCTTCTGTGCCTTCT
GGCGTCTCCTCGGTCGGGCATTCGCGTGTCGATGCCGAGGCCGAAGCCGGAGCCGCGGCCGGAAGATACACCGAC
GGCAACACGTACGCCTCGGCCTCCGGAGCCGCCAGCGCCGAAGCCACGGGCGAAACAAGCGCGGCAGCGAGAGCC
CAAGCCGAAGCCCGAGCCGGATCCGAAGGCGCATCAGCGTCCGCGGGGGCAACCGCCGAAGCCGACGGCCAAATC
TTGTCGACTTCAACTCAGGCTGGCTTCACGGCTCCCACGGACGGCACCCGCACTTCGTCCTCTCTCTCGCCTTCT
TCCACGAGTCTTTCTCGCGGGAACTCGACGACCGGGCTGCCGTCTGTTAGCGGGGCTTCTGCTGTGACGGTGGCT
GGGGGGCTTGTCATGGTTGTTGTTGCTGCTGCTCTGGCTATCTGA
Gene >Ophcf2|05474
ATGAAGTCAGCCCTCATCCTCTCAACCCTCACCCTCATCACCGCCCAACAACAACCCCCCTGCTCGCGAGAATGC
CACCAAGTGGCCGCAACCGAGAGCTCATGCAGCGAGGGCAAGTCCCTCTCCCAGCACGCAACCTGCATGTGTCGC
GAGAAGCCCTTCTTCAAAGAATGGACCGACTGCCGGCTCTGCCTCCGCGACGACAAGAAGGAGATCTCGGCGGAT
GAGTTCCGCGCCTACAGCTCCGTCCTCGACTCTGCTCGCGCCGCGCTCTGCGGTCCGTCTCCCACGGCTAGCTTC
CAGGCGCTCTTTACCCAGGCTTCGGCTGCGCGCAATAAGGTTCCTCAGGGGGTGGTGTCGTCTTCTGTGCCTTCT
GGCGTCTCCTCGGTCGGGCATTCGCGTGTCGATGCCGAGGCCGAAGCCGGAGCCGCGGCCGGAAGATACACCGAC
GGCAACACGTACGCCTCGGCCTCCGGAGCCGCCAGCGCCGAAGCCACGGGCGAAACAAGCGCGGCAGCGAGAGCC
CAAGCCGAAGCCCGAGCCGGATCCGAAGGCGCATCAGCGTCCGCGGGGGCAACCGCCGAAGCCGACGGCCAAATC
TTGTCGACTTCAACTCAGGCTGGCTTCACGGCTCCCACGGACGGCACCCGCACTTCGTCCTCTCTCTCGCCTTCT
TCCACGAGTCTTTCTCGCGGGAACTCGACGACCGGGCTGCCGTCTGTTAGCGGGGCTTCTGCTGTGACGGTGGCT
GGGGGGCTTGTCATGGTTGTTGTTGCTGCTGCTCTGGCTATCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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