© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05466 |
| Gene name | |
| Location | scaffold_06:228437..229980 |
| Strand | - |
| Gene length (bp) | 1543 |
| Transcript length (bp) | 1323 |
| Coding sequence length (bp) | 1323 |
| Protein length (aa) | 441 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01222 | ERG4_ERG24 | Ergosterol biosynthesis ERG4/ERG24 family | 1.0E-73 | 17 | 440 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | Yes |
| GO:0016020 | membrane | Yes |
| GO:0016126 | sterol biosynthetic process | Yes |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006694 | steroid biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:1901615 | organic hydroxy compound metabolic process | No |
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | No |
| GO:0016125 | sterol metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901617 | organic hydroxy compound biosynthetic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.0975 | 0.237 | 0.0135 | 0.0988 | 0.1158 | 0.0883 | 0.9467 | 0.3812 | 0.4882 | 0.0058 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
| 2 | 68 | 90 | 22 |
| 3 | 110 | 132 | 22 |
| 4 | 142 | 161 | 19 |
| 5 | 267 | 285 | 18 |
| 6 | 300 | 319 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 6241 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05466 MYEPRATTATSIFLAEASSLAIIVGSPLFFFLFYYIAYNDFHASLSAAATALLSQGPLTFFPSRLPRPTTASVTA YAIWLASQAVLYRHLPGRLHVGPRTPGGRRLAYRLNGLRAWMVTVGFSLVVVYLGLVDGAFVARCWGELLATANL YCFLLIFVFYVKARVEPDNEGETLLTGHFWYDLFNGGELHPRTGDLFDWKHFNASRTGGLLAWTLIDLSFVALQF QLHGSVTNSMVLATAFRVVIVVEYFYYEEWFFETLDGAHERFSFYNIYGFAAIMPQIWTLQTHYLALHPVQLSNF TAAAVSVLFAAGWALNHYANQQKSLSRQTAGECVIWGQEARFLEARYRTADGKRHRTVLLCSGWWGVVRHANYVG SLLYTWAACLACGTSHLFPYTEAIVVTLTVLHRCFRDEARCREKYGETWDEYCQRVRWRMMPGVF* |
| Coding | >Ophcf2|05466 ATGTACGAACCCAGAGCAACCACAGCAACCAGCATCTTCCTCGCCGAAGCATCAAGCCTGGCCATCATCGTCGGA AGCCCCCTCTTCTTCTTCCTCTTCTACTACATCGCCTACAACGACTTCCACGCCTCCCTCTCGGCCGCAGCAACC GCCCTCCTCTCCCAAGGTCCCCTGACCTTCTTCCCTTCCCGACTTCCCCGCCCGACGACAGCATCCGTAACGGCC TACGCCATCTGGCTCGCCTCGCAGGCTGTTCTGTACCGCCATCTCCCTGGTCGGCTTCATGTCGGGCCACGGACG CCCGGGGGGAGACGATTGGCTTACAGGTTGAATGGGCTGAGGGCTTGGATGGTGACTGTTGGATTTTCGTTGGTT GTCGTGTATCTTGGTCTCGTCGATGGGGCTTTTGTTGCGAGGTGTTGGGGGGAGCTTTTGGCGACGGCGAATTTG TATTGCTTTTTGCTCATCTTTGTGTTTTACGTCAAGGCGCGTGTTGAGCCGGATAACGAGGGCGAGACGCTCTTG ACAGGTCATTTCTGGTACGATCTCTTCAACGGCGGCGAACTCCATCCAAGAACTGGAGACTTGTTCGACTGGAAG CACTTCAACGCCAGTCGAACCGGGGGCTTATTGGCCTGGACCTTGATAGACTTGTCGTTTGTGGCGTTGCAGTTT CAGCTTCACGGGTCGGTTACCAACTCGATGGTTCTGGCTACGGCTTTTAGGGTTGTTATCGTGGTTGAATACTTT TACTACGAGGAGTGGTTCTTCGAGACGCTCGACGGAGCACACGAGCGCTTTTCCTTCTATAACATTTACGGCTTC GCCGCCATCATGCCGCAAATCTGGACGCTTCAGACGCATTACCTCGCCCTCCACCCCGTACAGTTGTCCAACTTT ACCGCAGCGGCCGTCTCGGTTCTCTTTGCTGCTGGCTGGGCGCTGAACCATTACGCCAACCAGCAGAAGAGCCTG TCTCGACAAACGGCGGGCGAGTGCGTCATCTGGGGACAGGAGGCGCGCTTCCTTGAGGCGAGATACCGCACTGCC GATGGGAAGAGACACAGGACGGTCCTCTTGTGCTCTGGCTGGTGGGGAGTCGTTCGTCATGCCAACTACGTAGGA AGTCTGCTGTATACCTGGGCAGCCTGCCTCGCCTGCGGAACGAGTCACTTGTTCCCCTACACCGAGGCCATCGTC GTAACTCTCACCGTTCTTCACCGCTGTTTCCGGGACGAGGCGCGGTGTCGAGAAAAATATGGCGAGACGTGGGAT GAATACTGCCAGAGGGTGAGATGGCGCATGATGCCAGGGGTTTTTTAA |
| Transcript | >Ophcf2|05466 ATGTACGAACCCAGAGCAACCACAGCAACCAGCATCTTCCTCGCCGAAGCATCAAGCCTGGCCATCATCGTCGGA AGCCCCCTCTTCTTCTTCCTCTTCTACTACATCGCCTACAACGACTTCCACGCCTCCCTCTCGGCCGCAGCAACC GCCCTCCTCTCCCAAGGTCCCCTGACCTTCTTCCCTTCCCGACTTCCCCGCCCGACGACAGCATCCGTAACGGCC TACGCCATCTGGCTCGCCTCGCAGGCTGTTCTGTACCGCCATCTCCCTGGTCGGCTTCATGTCGGGCCACGGACG CCCGGGGGGAGACGATTGGCTTACAGGTTGAATGGGCTGAGGGCTTGGATGGTGACTGTTGGATTTTCGTTGGTT GTCGTGTATCTTGGTCTCGTCGATGGGGCTTTTGTTGCGAGGTGTTGGGGGGAGCTTTTGGCGACGGCGAATTTG TATTGCTTTTTGCTCATCTTTGTGTTTTACGTCAAGGCGCGTGTTGAGCCGGATAACGAGGGCGAGACGCTCTTG ACAGGTCATTTCTGGTACGATCTCTTCAACGGCGGCGAACTCCATCCAAGAACTGGAGACTTGTTCGACTGGAAG CACTTCAACGCCAGTCGAACCGGGGGCTTATTGGCCTGGACCTTGATAGACTTGTCGTTTGTGGCGTTGCAGTTT CAGCTTCACGGGTCGGTTACCAACTCGATGGTTCTGGCTACGGCTTTTAGGGTTGTTATCGTGGTTGAATACTTT TACTACGAGGAGTGGTTCTTCGAGACGCTCGACGGAGCACACGAGCGCTTTTCCTTCTATAACATTTACGGCTTC GCCGCCATCATGCCGCAAATCTGGACGCTTCAGACGCATTACCTCGCCCTCCACCCCGTACAGTTGTCCAACTTT ACCGCAGCGGCCGTCTCGGTTCTCTTTGCTGCTGGCTGGGCGCTGAACCATTACGCCAACCAGCAGAAGAGCCTG TCTCGACAAACGGCGGGCGAGTGCGTCATCTGGGGACAGGAGGCGCGCTTCCTTGAGGCGAGATACCGCACTGCC GATGGGAAGAGACACAGGACGGTCCTCTTGTGCTCTGGCTGGTGGGGAGTCGTTCGTCATGCCAACTACGTAGGA AGTCTGCTGTATACCTGGGCAGCCTGCCTCGCCTGCGGAACGAGTCACTTGTTCCCCTACACCGAGGCCATCGTC GTAACTCTCACCGTTCTTCACCGCTGTTTCCGGGACGAGGCGCGGTGTCGAGAAAAATATGGCGAGACGTGGGAT GAATACTGCCAGAGGGTGAGATGGCGCATGATGCCAGGGGTTTTTTAA |
| Gene | >Ophcf2|05466 ATGTACGAACCCAGAGCAACCACAGCAACCAGCATCTTCCTCGCCGAAGCATCAAGCCTGGCCATCATCGTCGGA AGCCCCCTCTTCTTCTTCCTCTTCTACTACATCGCCTACAACGACTTCCACGCCTCCCTCTCGGCCGCAGCAACC GCCCTCCTCTCCCAAGGTCCCCTGACCTTCTTCCCTTCCCGACTTCCCCGCCCGACGACAGCATCCGTAACGGCC TACGCCATCTGGCTCGCCTCGCAGGCTGTTCTGTACCGCCATCTCCCTGGTCGGCTTCATGTCGGGCCACGGACG CCCGGGGGGAGACGATTGGCTTACAGGTTGAATGGGCTGAGGGCTTGGATGGTGACTGTTGGATTTTCGTTGGTT GTCGTGTATCTTGGTCTCGTCGATGGGGCTTTTGTTGCGAGGTGTTGGGGGGAGCTTTTGGCGACGGCGAATTTG TATTGCTTTTTGCTCATCTTTGTGTTTTACGTCAAGGCGCGTGTTGAGCCGGATAACGAGGGCGAGACGCTCTTG ACAGGTGAGTTTCATTTTTTCCTCCTTTTCCATCGTCTTGGATCCTCTCTTACGAGTCAGGTCATTTCTGGTACG ATCTCTTCAACGGCGGCGAACTCCATCCAAGAACTGGAGACTTGTTCGACTGGAAGCACTTCAACGCCAGTCGAA CCGGGGGCTTATTGGCCTGGACCTTGATGTTTGTCCCTGTTTCCCATCAGCCGAGTCTGAGAGCTGACGGGGCTG AAGAGACTTGTCGTTTGTGGCGTTGCAGTTTCAGCTTCACGGGTCGGTTACCAACTCGATGGTTCTGGCTACGGC TTTTAGGGTTGTTATCGTGGTTGAATACTTTTACTACGAGGAGTGGTAAGTTCACGGATGGACTGTTTTTGTATG CAGTTTATGCCGGACTCACGCGGGCAGGGCAGGTTCTTCGAGACGCTCGACGGAGCACACGAGCGCTTTTCCTTC TATAACATTTACGGCTTCGCCGCCATCATGCCGCAAATCTGGACGCTTCAGACGCATTACCTCGCCCTCCACCCC GTACAGTTGTCCAACTTTACCGCAGCGGCCGTCTCGGTTCTCTTTGCTGCTGGCTGGGCGCTGAACCATTACGCC AACCAGCAGAAGAGCCTGTCTCGACAAACGGCGGGCGAGTGCGTCATCTGGGGACAGGAGGCGCGCTTCCTTGAG GCGAGATACCGCACTGCCGATGGGAAGAGACACAGGACGGTCCTCTTGTGCTCTGGTAAGCCCCATTGTCCAACT CTGTCAACGTTTGATGCTGATCGTTGGGATAGGCTGGTGGGGAGTCGTTCGTCATGCCAACTACGTAGGAAGTCT GCTGTATACCTGGGCAGCCTGCCTCGCCTGCGGAACGAGTCACTTGTTCCCCTACACCGAGGCCATCGTCGTAAC TCTCACCGTTCTTCACCGCTGTTTCCGGGACGAGGCGCGGTGTCGAGAAAAATATGGCGAGACGTGGGATGAATA CTGCCAGAGGGTGAGATGGCGCATGATGCCAGGGGTTTTTTAA |