© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05454 |
| Gene name | |
| Location | scaffold_06:203341..204881 |
| Strand | + |
| Gene length (bp) | 1540 |
| Transcript length (bp) | 1359 |
| Coding sequence length (bp) | 1359 |
| Protein length (aa) | 453 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16010 | CDH-cyt | Cytochrome domain of cellobiose dehydrogenase | 2.5E-23 | 20 | 181 |
| PF03188 | Cytochrom_B561 | Eukaryotic cytochrome b561 | 4.6E-09 | 236 | 337 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Signal peptide | 0.079 | 0.0869 | 0.3397 | 0.431 | 0.102 | 0.0065 | 0.3756 | 0.6517 | 0.4107 | 0.0033 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 215 | 237 | 22 |
| 2 | 244 | 266 | 22 |
| 3 | 281 | 300 | 19 |
| 4 | 320 | 337 | 17 |
| 5 | 347 | 366 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 2468 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05454 MRLALTAALAAAAASALQSTFVSPNRDLAFALSVPDTDNTDIFFSIRAPISYAWAAVGLGSDDMKGALFLIIYRN KHRDNVTLSPRLAYGNYEPQHYPDMQYDVLPGSGIDGDHMVLNARCTQHCRSWPAADSNSGYMDVSSASGKAIFA MGPRAGFGSDSPAADLQFHREFGVFSIDIKRTLGAPDPPKLEDDSESVGTSLDYRRTGRREPRSSLHGSFMVFSV VFLLPVGAALRSSERWARFHSLCQSMAVLIMLAGVVTGVLASFRYQRSRNFRAHHQIIGFIVVGFVLAQLVLGFL HQRKMRKTNMPTNQGRYHRYLGGAIIIFGVLNAFFGFDLALDYKLGYTLCGFVLISVFVVLFLYLSRRGVRGRRQ RQTATTADGPSTGYQPQPWREEPNPPDAPPSYDAASSQYISLQPVPSRASPWRGSDVKDGGDDQPALGGLQRPRE FT* |
| Coding | >Ophcf2|05454 ATGAGGCTCGCGCTCACGGCCGCTCTGGCCGCAGCAGCGGCCTCAGCCCTCCAGTCCACCTTCGTCTCCCCTAAT CGCGACCTCGCCTTTGCCCTCTCGGTTCCAGACACAGACAATACCGACATCTTCTTCAGCATCCGAGCCCCCATC TCCTACGCCTGGGCTGCCGTCGGTCTCGGAAGCGATGACATGAAGGGTGCCCTCTTCCTCATCATCTACCGCAAC AAGCACCGCGACAACGTCACCCTCTCCCCGCGCCTCGCCTACGGCAACTACGAGCCCCAGCACTACCCAGACATG CAGTACGACGTGCTGCCGGGCTCGGGCATCGACGGCGATCACATGGTACTTAATGCCCGGTGCACGCAGCACTGT CGCAGCTGGCCGGCTGCCGACTCGAACAGCGGATATATGGATGTGTCGTCGGCGTCGGGGAAGGCTATCTTTGCC ATGGGGCCGCGTGCTGGCTTTGGGAGTGATAGCCCGGCTGCTGATTTGCAGTTCCATCGCGAGTTTGGCGTCTTC TCCATTGATATCAAGAGGACGCTTGGTGCTCCTGATCCGCCCAAGTTGGAAGATGACTCTGAGTCTGTGGGAACC TCACTGGATTACCGCCGTACCGGACGTCGTGAGCCTCGGTCTAGTCTTCACGGTTCCTTCATGGTATTTTCCGTC GTCTTTCTTTTGCCTGTTGGTGCTGCTCTGCGCAGTTCAGAACGCTGGGCTCGCTTCCACTCCCTCTGCCAGTCC ATGGCCGTCCTCATCATGCTGGCTGGCGTCGTTACTGGTGTTCTGGCCAGTTTCCGCTACCAGAGGTCACGGAAC TTTCGCGCTCATCATCAGATCATTGGCTTCATCGTCGTCGGCTTCGTTCTCGCTCAGCTCGTCCTTGGCTTCCTT CACCAACGGAAGATGCGCAAGACGAATATGCCGACGAATCAGGGCCGCTATCATCGCTACCTAGGCGGTGCCATC ATCATCTTCGGCGTCCTCAACGCCTTCTTTGGCTTCGACTTAGCCCTCGATTACAAATTGGGCTACACGCTCTGC GGCTTCGTCCTCATCTCCGTCTTCGTCGTCCTCTTTCTCTACCTCAGTCGCCGCGGCGTACGCGGGAGGAGACAG CGGCAGACGGCTACCACAGCGGACGGTCCGTCGACAGGATACCAGCCGCAGCCGTGGCGCGAGGAGCCGAATCCG CCGGATGCGCCGCCCAGTTACGACGCTGCTTCGTCGCAGTATATCAGTCTGCAGCCTGTTCCCTCGCGGGCTTCG CCTTGGCGGGGCTCGGATGTCAAGGACGGGGGGGATGATCAGCCGGCTTTGGGTGGTTTGCAGCGGCCTAGGGAG TTTACGTAG |
| Transcript | >Ophcf2|05454 ATGAGGCTCGCGCTCACGGCCGCTCTGGCCGCAGCAGCGGCCTCAGCCCTCCAGTCCACCTTCGTCTCCCCTAAT CGCGACCTCGCCTTTGCCCTCTCGGTTCCAGACACAGACAATACCGACATCTTCTTCAGCATCCGAGCCCCCATC TCCTACGCCTGGGCTGCCGTCGGTCTCGGAAGCGATGACATGAAGGGTGCCCTCTTCCTCATCATCTACCGCAAC AAGCACCGCGACAACGTCACCCTCTCCCCGCGCCTCGCCTACGGCAACTACGAGCCCCAGCACTACCCAGACATG CAGTACGACGTGCTGCCGGGCTCGGGCATCGACGGCGATCACATGGTACTTAATGCCCGGTGCACGCAGCACTGT CGCAGCTGGCCGGCTGCCGACTCGAACAGCGGATATATGGATGTGTCGTCGGCGTCGGGGAAGGCTATCTTTGCC ATGGGGCCGCGTGCTGGCTTTGGGAGTGATAGCCCGGCTGCTGATTTGCAGTTCCATCGCGAGTTTGGCGTCTTC TCCATTGATATCAAGAGGACGCTTGGTGCTCCTGATCCGCCCAAGTTGGAAGATGACTCTGAGTCTGTGGGAACC TCACTGGATTACCGCCGTACCGGACGTCGTGAGCCTCGGTCTAGTCTTCACGGTTCCTTCATGGTATTTTCCGTC GTCTTTCTTTTGCCTGTTGGTGCTGCTCTGCGCAGTTCAGAACGCTGGGCTCGCTTCCACTCCCTCTGCCAGTCC ATGGCCGTCCTCATCATGCTGGCTGGCGTCGTTACTGGTGTTCTGGCCAGTTTCCGCTACCAGAGGTCACGGAAC TTTCGCGCTCATCATCAGATCATTGGCTTCATCGTCGTCGGCTTCGTTCTCGCTCAGCTCGTCCTTGGCTTCCTT CACCAACGGAAGATGCGCAAGACGAATATGCCGACGAATCAGGGCCGCTATCATCGCTACCTAGGCGGTGCCATC ATCATCTTCGGCGTCCTCAACGCCTTCTTTGGCTTCGACTTAGCCCTCGATTACAAATTGGGCTACACGCTCTGC GGCTTCGTCCTCATCTCCGTCTTCGTCGTCCTCTTTCTCTACCTCAGTCGCCGCGGCGTACGCGGGAGGAGACAG CGGCAGACGGCTACCACAGCGGACGGTCCGTCGACAGGATACCAGCCGCAGCCGTGGCGCGAGGAGCCGAATCCG CCGGATGCGCCGCCCAGTTACGACGCTGCTTCGTCGCAGTATATCAGTCTGCAGCCTGTTCCCTCGCGGGCTTCG CCTTGGCGGGGCTCGGATGTCAAGGACGGGGGGGATGATCAGCCGGCTTTGGGTGGTTTGCAGCGGCCTAGGGAG TTTACGTAG |
| Gene | >Ophcf2|05454 ATGAGGCTCGCGCTCACGGCCGCTCTGGCCGCAGCAGGTGAGACGCCAGCTTCAGACGCAGATGACGATGACGAC GACGGCTAATCTCGAACCTCTACAGCGGCCTCAGCCCTCCAGTCCACCTTCGTCTCCCCTAATCGCGACCTCGCC TTTGCCCTCTCGGTTCCAGACACAGACAATACCGACATCTTCTTCAGCATCCGAGCCCCCATCTCCTACGCCTGG GCTGCCGTCGGTCTCGGAAGCGATGACATGAAGGGTGCCCTCTTCCTCATCATCTACCGCAACAAGCACCGCGAC AACGTCACCCTCTCCCCGCGCCTCGCCTACGGCAACTACGAGCCCCAGCACTACCCAGACATGCAGTACGACGTG CTGCCGGGCTCGGGCATCGACGGCGATCACATGGTACTTAATGCCCGGTGCACGCAGCACTGTCGCAGCTGGCCG GCTGCCGACTCGAACAGCGGATATATGGATGTGTCGTCGGCGTCGGGGAAGGCTATCTTTGCCATGGGGCCGCGT GCTGGCTTTGGGAGTGATAGCCCGGCTGCTGATTTGCAGTTCCATCGCGAGTTTGGCGTCTTCTCCATTGATATC AAGAGGACGCTTGGTGCTCCTGATCCGCCCAAGTTGGAAGATGACTCTGAGTCTGTGGGAACCTCACTGGATTAC CGCCGTACCGGACGTCGTGAGCCTCGGTCTAGTCTTCACGGTTCCTTCATGGTATTTTCCGTCGTCTTTCTTTTG CCTGTTGGTGCTGCTCTGCGCAGTTCAGAACGCTGGGCTCGCTTCCACTCCCTCTGCCAGTCCATGGCCGTCCTC ATCATGCTGGCTGGCGTCGTTACTGGTGTTCTGGCCAGTTTCCGCTACCAGAGGGTGCGCCTGATGATTGTCCTA CCCCTTCCTGCATAATGTACTCACGCGCGTCTAGTCACGGAACTTTCGCGCTCATCATCAGATCATTGGCTTCAT CGTCGTCGGCTTCGTTCTCGCTCAGCTCGTCCTTGGCTTCCTTCACCAACGGAAGATGCGCAAGACGAATATGCC GACGAATCAGGGCCGCTATCATCGCTACCTAGGCGGTGCCATCATCATCTTCGGCGTCCTCAACGCCTTCTTGTG CGTCTATTCCCCCGCTGATCCCCTTCTAAAGAGCATCTCGCTCACGCTACAGCCCCATAGTGGCTTCGACTTAGC CCTCGATTACAAATTGGGCTACACGCTCTGCGGCTTCGTCCTCATCTCCGTCTTCGTCGTCCTCTTTCTCTACCT CAGTCGCCGCGGCGTACGCGGGAGGAGACAGCGGCAGACGGCTACCACAGCGGACGGTCCGTCGACAGGATACCA GCCGCAGCCGTGGCGCGAGGAGCCGAATCCGCCGGATGCGCCGCCCAGTTACGACGCTGCTTCGTCGCAGTATAT CAGTCTGCAGCCTGTTCCCTCGCGGGCTTCGCCTTGGCGGGGCTCGGATGTCAAGGACGGGGGGGATGATCAGCC GGCTTTGGGTGGTTTGCAGCGGCCTAGGGAGTTTACGTAG |