© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05435 |
| Gene name | |
| Location | scaffold_06:129776..131011 |
| Strand | - |
| Gene length (bp) | 1235 |
| Transcript length (bp) | 1050 |
| Coding sequence length (bp) | 1050 |
| Protein length (aa) | 350 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01435 | Peptidase_M48 | Peptidase family M48 | 4.8E-30 | 114 | 300 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004222 | metalloendopeptidase activity | Yes |
| GO:0006508 | proteolysis | Yes |
| GO:0008233 | peptidase activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0003674 | molecular_function | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0003824 | catalytic activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008237 | metallopeptidase activity | No |
| GO:0008152 | metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.1859 | 0.098 | 0.1291 | 0.0538 | 0.9489 | 0.2226 | 0.3699 | 0.0535 | 0.1205 | 0.1707 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 205 | 227 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5297 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05435 MSIARLPLKITREASRYSRQRAQFRTARPLIPDSLLEPFTRLRISSRTRIASASACAVVAVAFYLYNSDTVPETG RRRFNFFSDGLLARLFAWEEKHLESLIGEFVLGERDWRSRAVKRVMARLVPLCGSHEPWRCSVVAGRGMINALVS PGRKIVMHASLVDLCGTDDAIAAVLAHEIAHHRAQHHGERYSTLTAITMTSSCAVLASGAVKGLMVFSLGLLFGG IYLRRVLFELPMSRRQETEADYIGLMMMADACYDPRAAVGLWRRLDRALDEGGVVHEMLRTHPTNKNRITRLREW LPTAMERRSLRGCPALGWRSFISSRKVRRLPSAQPVSIHDVIRDIRPPA* |
| Coding | >Ophcf2|05435 ATGAGTATCGCCCGCCTCCCCCTCAAAATCACCCGTGAAGCCTCCCGCTATAGCCGCCAACGAGCCCAGTTCCGC ACCGCCCGTCCCCTCATCCCAGACTCCCTCCTCGAGCCCTTCACACGCCTTCGCATCTCCTCGAGAACACGCATC GCCTCTGCCTCGGCCTGCGCCGTCGTCGCCGTCGCCTTCTATCTGTACAACTCGGACACCGTTCCGGAAACGGGG AGGCGACGCTTCAACTTCTTCTCCGATGGCCTCCTCGCTCGTCTCTTCGCGTGGGAAGAGAAGCATCTGGAGAGC CTCATTGGGGAGTTTGTGCTCGGGGAGAGGGATTGGCGGTCTCGGGCGGTGAAGAGGGTCATGGCTCGTCTCGTG CCCTTGTGCGGTAGTCATGAGCCCTGGCGTTGCTCCGTCGTTGCCGGTCGTGGTATGATAAACGCCTTGGTCTCG CCGGGTCGCAAAATCGTCATGCACGCAAGCCTCGTCGACCTCTGCGGTACCGACGACGCCATCGCCGCCGTCCTC GCCCACGAAATCGCCCACCATCGCGCCCAACACCATGGCGAGCGCTACTCCACCCTGACCGCCATCACCATGACG AGCAGCTGCGCCGTCTTGGCTTCCGGCGCGGTCAAGGGTCTGATGGTATTCTCGCTGGGGCTCCTCTTTGGGGGT ATCTATCTTCGCCGAGTCCTCTTCGAACTGCCGATGAGTCGCAGGCAGGAGACCGAGGCGGATTACATTGGGTTG ATGATGATGGCGGATGCTTGTTATGATCCCCGTGCTGCCGTCGGCCTTTGGCGGAGGCTCGATCGGGCGCTTGAT GAGGGGGGGGTGGTGCATGAAATGCTGAGGACGCACCCTACTAACAAGAACAGAATCACCAGACTCAGAGAATGG CTTCCCACAGCCATGGAACGCCGCTCCCTCCGCGGCTGTCCCGCTCTAGGCTGGCGCAGCTTCATATCAAGTCGC AAGGTCCGGCGCCTACCCTCGGCGCAGCCTGTCTCTATCCATGACGTCATTCGCGACATCCGTCCTCCCGCGTGA |
| Transcript | >Ophcf2|05435 ATGAGTATCGCCCGCCTCCCCCTCAAAATCACCCGTGAAGCCTCCCGCTATAGCCGCCAACGAGCCCAGTTCCGC ACCGCCCGTCCCCTCATCCCAGACTCCCTCCTCGAGCCCTTCACACGCCTTCGCATCTCCTCGAGAACACGCATC GCCTCTGCCTCGGCCTGCGCCGTCGTCGCCGTCGCCTTCTATCTGTACAACTCGGACACCGTTCCGGAAACGGGG AGGCGACGCTTCAACTTCTTCTCCGATGGCCTCCTCGCTCGTCTCTTCGCGTGGGAAGAGAAGCATCTGGAGAGC CTCATTGGGGAGTTTGTGCTCGGGGAGAGGGATTGGCGGTCTCGGGCGGTGAAGAGGGTCATGGCTCGTCTCGTG CCCTTGTGCGGTAGTCATGAGCCCTGGCGTTGCTCCGTCGTTGCCGGTCGTGGTATGATAAACGCCTTGGTCTCG CCGGGTCGCAAAATCGTCATGCACGCAAGCCTCGTCGACCTCTGCGGTACCGACGACGCCATCGCCGCCGTCCTC GCCCACGAAATCGCCCACCATCGCGCCCAACACCATGGCGAGCGCTACTCCACCCTGACCGCCATCACCATGACG AGCAGCTGCGCCGTCTTGGCTTCCGGCGCGGTCAAGGGTCTGATGGTATTCTCGCTGGGGCTCCTCTTTGGGGGT ATCTATCTTCGCCGAGTCCTCTTCGAACTGCCGATGAGTCGCAGGCAGGAGACCGAGGCGGATTACATTGGGTTG ATGATGATGGCGGATGCTTGTTATGATCCCCGTGCTGCCGTCGGCCTTTGGCGGAGGCTCGATCGGGCGCTTGAT GAGGGGGGGGTGGTGCATGAAATGCTGAGGACGCACCCTACTAACAAGAACAGAATCACCAGACTCAGAGAATGG CTTCCCACAGCCATGGAACGCCGCTCCCTCCGCGGCTGTCCCGCTCTAGGCTGGCGCAGCTTCATATCAAGTCGC AAGGTCCGGCGCCTACCCTCGGCGCAGCCTGTCTCTATCCATGACGTCATTCGCGACATCCGTCCTCCCGCGTGA |
| Gene | >Ophcf2|05435 ATGAGTATCGCCCGCCTCCCCCTCAAAATCACCCGTGAAGCCTCCCGCTATAGCCGCCAACGAGCCCAGTTCCGC ACCGCCCGTCCCCTCATCCCAGACTCCCTCCTCGAGCCCTTCACACGCCTTCGCATCTCCTCGAGAACACGCATC GCCTCTGCCTCGGCCTGCGCCGTCGTCGCCGTCGCCTTCTATCTGTACAACTCGGACACCGTTCCGGAAACGGGG AGGCGACGCTTCAACTTCTTCTCCGATGGCCTCCTCGCTCGTCTCTTCGCGTGGGAAGAGAAGCATCTGGAGAGC CTCATTGGGGAGTTTGTGCTCGGGGAGAGGGATTGGCGGTCTCGGGCGGTGAAGAGGGTCATGGCTCGTCTCGTG CCCTTGTGCGGTAGTCATGAGCCCTGGCGTTGCTCCGTCGTTGCCGGTCGTGGTAGGTTCCCCCTCTCTCTCTCC GAGAATAATCACCAGAGTCTTTCGTTCTGACGATAGATGCAGGTATGATAAACGCCTTGGTCTCGCCGGGTCGCA AAATCGTCATGCACGCAAGCCTCGTCGACCTCTGCGGTACCGACGACGCCATCGCCGCCGTCCTCGCCCACGAAA TCGCCCACCATCGCGCCCAACACCATGGCGAGCGCTACTCCACCCTGACCGCCATCACCATGACGAGCAGCTGCG CCGTCTTGGCTTCCGGCGCGGTCAAGGGTCTGATGGTATTCTCGCTGGGGCTCCTCTTTGGGGGTATCTATCTTC GCCGAGTCCTCTTCGAACTGCCGATGAGTCGCAGGCAGGAGACCGAGGCGGATTACATTGGGTTGATGATGATGG CGGATGCTTGTTATGATCCCCGTGCTGCCGTCGGCCTTTGGCGGAGGCTCGATCGGGCGCTTGATGAGGGGGGGG TGGTGCATGAAATGCTGAGGACGCACCCTACTGTGAGTTCCTCCGTCTGTCCGTTTACCTGCTGATGTCAGGCTG AGTCGAACAGAACAAGAACAGAATCACCAGACTCAGAGAATGGCTTCCCACAGCCATGGAACGCCGCTCCCTCCG CGGCTGTCCCGCTCTAGGCTGGCGCAGCTTCATATCAAGTCGCAAGGTCCGGCGCCTACGTTCGTCACCCCGTCG TCCTTTTTTTCCGTAGGTAAGGAATTCAATACAGTCTGACGATGCATCTAGCCTCGGCGCAGCCTGTCTCTATCC ATGACGTCATTCGCGACATCCGTCCTCCCGCGTGA |