© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05417 |
| Gene name | |
| Location | scaffold_06:78535..79256 |
| Strand | + |
| Gene length (bp) | 721 |
| Transcript length (bp) | 525 |
| Coding sequence length (bp) | 525 |
| Protein length (aa) | 175 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05821 | NDUF_B8 | NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8) | 2.2E-09 | 57 | 133 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005739 | mitochondrion | Yes |
| GO:0005575 | cellular_component | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0043229 | intracellular organelle | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043226 | organelle | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 118 | 140 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 376.57 | 213.97 | 539.16 |
| Alive | In ants, during behavior modification | 237.88 | 134.52 | 341.23 |
| Dead | In ants, recently dead | 231.62 | 132.14 | 331.10 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.011210 | yes |
| Alive | Dead | 0.899559 | no |
| Dead | Fungus | 0.007753 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05417 MPLLLRQLSRAPALRHGLAASRRLPVMQRRGFLPPQYSDEKILEQKYPEPKVLSEAEDPEMNGGYVNPPRIKRQH RDPYADWFDPQERRNYGEPVHEDNDTLGMFSPYEYTWTTDGPALIMIGCFLAVAFTMSGIVYLTYPDRPAYPREF EGGLERELGGPGATRARMAGDPDP* |
| Coding | >Ophcf2|05417 ATGCCTCTGCTGCTTCGCCAGCTCTCGCGGGCGCCGGCCCTGCGCCATGGTCTGGCCGCATCTCGACGACTGCCG GTGATGCAACGCCGCGGCTTCCTGCCACCTCAGTACAGTGACGAGAAGATTTTGGAACAAAAATATCCCGAACCC AAGGTGCTGAGCGAGGCAGAGGATCCGGAAATGAACGGCGGCTACGTCAACCCGCCGCGCATCAAACGCCAGCAC CGCGATCCCTACGCCGACTGGTTTGATCCTCAAGAGCGGCGGAACTACGGTGAGCCCGTTCACGAGGATAACGAC ACGCTAGGCATGTTCTCGCCCTACGAGTATACGTGGACGACGGACGGTCCGGCGCTCATCATGATCGGTTGCTTT CTCGCCGTTGCCTTTACCATGTCCGGAATCGTCTATCTTACGTATCCCGATCGGCCCGCATACCCGAGGGAGTTT GAAGGAGGGCTGGAGCGCGAGCTGGGTGGCCCTGGAGCCACGAGGGCCCGGATGGCCGGCGATCCAGATCCTTAG |
| Transcript | >Ophcf2|05417 ATGCCTCTGCTGCTTCGCCAGCTCTCGCGGGCGCCGGCCCTGCGCCATGGTCTGGCCGCATCTCGACGACTGCCG GTGATGCAACGCCGCGGCTTCCTGCCACCTCAGTACAGTGACGAGAAGATTTTGGAACAAAAATATCCCGAACCC AAGGTGCTGAGCGAGGCAGAGGATCCGGAAATGAACGGCGGCTACGTCAACCCGCCGCGCATCAAACGCCAGCAC CGCGATCCCTACGCCGACTGGTTTGATCCTCAAGAGCGGCGGAACTACGGTGAGCCCGTTCACGAGGATAACGAC ACGCTAGGCATGTTCTCGCCCTACGAGTATACGTGGACGACGGACGGTCCGGCGCTCATCATGATCGGTTGCTTT CTCGCCGTTGCCTTTACCATGTCCGGAATCGTCTATCTTACGTATCCCGATCGGCCCGCATACCCGAGGGAGTTT GAAGGAGGGCTGGAGCGCGAGCTGGGTGGCCCTGGAGCCACGAGGGCCCGGATGGCCGGCGATCCAGATCCTTAG |
| Gene | >Ophcf2|05417 ATGCCTCTGGTACGTCGACGGCTTGTCACCTCTGGACTCGTCAGCTGCTGAAAACTCCGTCTTCTTTCCAGCTGC TTCGCCAGCTCTCGCGGGCGCCGGCCCTGCGCCATGGTCTGGCCGCATCTCGACGACTGCCGGTGATGCAACGCC GCGGCTTCCTGCCACCTCAGTACAGTGACGAGAAGATTTTGGAACAAAAATATCCCGAACCCAAGGTGCTGAGCG AGGCAGAGGATCCGGAAATGGTCAGTGTCGTAGCCCCAGCGCAGCGAGTCGGACGAGGCTAGGTAGGTAGGTAGG TAGGTACTGACAGACGACACGATAGAACGGCGGCTACGTCAACCCGCCGCGCATCAAACGCCAGCACCGCGATCC CTACGCCGACTGGTTTGATCCTCAAGAGCGGCGGAACTACGGTGAGCCCGTTCACGAGGATAACGACACGCTAGG CATGTTCTCGCCCTACGAGTATACGTGGACGACGGACGGTCCGGCGCTCATCATGATCGGTTGCTTTCTCGCCGT TGCCTTTACCATGTCCGGAATCGTCTATCTTACGTATCCCGATCGGCCCGCATACCCGAGGGAGTTTGAAGGAGG GCTGGAGCGCGAGCTGGGTGGCCCTGGAGCCACGAGGGTAGGTCCAACACCGGCAGCAACAGACGGAACTCGGCT AACAGTGACTTGGCAGGCCCGGATGGCCGGCGATCCAGATCCTTAG |