Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05415
Gene name
Locationscaffold_06:67714..68443
Strand+
Gene length (bp)729
Transcript length (bp)573
Coding sequence length (bp)573
Protein length (aa) 191

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10311 Ilm1 Increased loss of mitochondrial DNA protein 1 1.5E-63 4 178

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 22 0.5

Transmembrane Domains

Domain # Start End Length
1 9 31 22
2 57 79 22
3 86 108 22
4 150 169 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05415
MALIAAKTIITSVTLFHLTLAFFFLTDPGTIQDQILVYVLGESMGMPVARGFDGQSQPLAFLACVLAMFGLSDLF
ALSMPEELSSLYYWGVQAPLRSLFSMLLVFYSYFLGPSSPMYGASAPRSTTRPPPANTTSYRSSSWGGDGLKNRV
FFTFIFLEMITWFWIWVTLREERAGLVMRVRKQPTRAKQP*
Coding >Ophcf2|05415
ATGGCGCTCATCGCAGCAAAGACCATCATCACCTCCGTCACCCTCTTCCACCTAACGCTCGCCTTCTTCTTCCTC
ACGGATCCGGGCACGATACAGGATCAGATTCTCGTCTATGTCCTTGGCGAAAGCATGGGCATGCCCGTTGCTCGA
GGCTTCGACGGCCAATCCCAACCGCTAGCCTTCCTAGCCTGCGTCCTCGCCATGTTCGGACTCAGCGATCTCTTT
GCGCTTTCTATGCCAGAGGAGCTCTCGTCGCTATACTACTGGGGCGTCCAAGCACCCCTCCGTTCTCTATTCTCC
ATGCTCCTCGTCTTCTACTCCTACTTCCTCGGCCCCTCCTCACCCATGTACGGCGCATCGGCCCCACGATCCACA
ACCCGACCCCCACCCGCCAACACGACGAGCTACCGATCCTCATCCTGGGGCGGCGACGGGCTCAAGAACCGCGTC
TTCTTCACCTTTATCTTTCTCGAGATGATTACTTGGTTTTGGATATGGGTTACGCTCAGGGAGGAGAGGGCTGGT
CTGGTGATGAGGGTACGGAAGCAGCCGACGCGCGCGAAGCAGCCGTGA
Transcript >Ophcf2|05415
ATGGCGCTCATCGCAGCAAAGACCATCATCACCTCCGTCACCCTCTTCCACCTAACGCTCGCCTTCTTCTTCCTC
ACGGATCCGGGCACGATACAGGATCAGATTCTCGTCTATGTCCTTGGCGAAAGCATGGGCATGCCCGTTGCTCGA
GGCTTCGACGGCCAATCCCAACCGCTAGCCTTCCTAGCCTGCGTCCTCGCCATGTTCGGACTCAGCGATCTCTTT
GCGCTTTCTATGCCAGAGGAGCTCTCGTCGCTATACTACTGGGGCGTCCAAGCACCCCTCCGTTCTCTATTCTCC
ATGCTCCTCGTCTTCTACTCCTACTTCCTCGGCCCCTCCTCACCCATGTACGGCGCATCGGCCCCACGATCCACA
ACCCGACCCCCACCCGCCAACACGACGAGCTACCGATCCTCATCCTGGGGCGGCGACGGGCTCAAGAACCGCGTC
TTCTTCACCTTTATCTTTCTCGAGATGATTACTTGGTTTTGGATATGGGTTACGCTCAGGGAGGAGAGGGCTGGT
CTGGTGATGAGGGTACGGAAGCAGCCGACGCGCGCGAAGCAGCCGTGA
Gene >Ophcf2|05415
ATGGCGCTCATCGCAGCAAAGACCATCATCACCTCCGTCACCCTCTTCCACCTAACGCTCGCCTTCTTCTTCCTC
ACGGATCCGGGCACGATACAGGATCAGATTCTCGTCTATGTCCTTGGCGAAAGCATGGGCATGGTATCTACTTGC
TTCTCTTTCTCTGTCACTCTCTCTCTCTCTCTAGACTTTCAAACCCTGAAGCTCGTCGTGCTAATAAAATCTGAT
GGTACAGCCCGTTGCTCGAGGCTTCGACGGCCAATCCCAACCGCTAGCCTTCCTAGCCTGCGTCCTCGCCATGTT
CGGACTCAGCGATCTCTTTGCGCTTTCTATGCCAGAGGAGCTCTCGTCGCTATACTACTGGGGCGTCCAAGGTAC
GAACCCCCCCCCCCCCCCTTTCTCTATCCCCCAAATCACCTCCATCTAACACGCCCAGCACCCCTCCGTTCTCTA
TTCTCCATGCTCCTCGTCTTCTACTCCTACTTCCTCGGCCCCTCCTCACCCATGTACGGCGCATCGGCCCCACGA
TCCACAACCCGACCCCCACCCGCCAACACGACGAGCTACCGATCCTCATCCTGGGGCGGCGACGGGCTCAAGAAC
CGCGTCTTCTTCACCTTTATCTTTCTCGAGATGATTACTTGGTTTTGGATATGGGTTACGCTCAGGGAGGAGAGG
GCTGGTCTGGTGATGAGGGTACGGAAGCAGCCGACGCGCGCGAAGCAGCCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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