© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05404 |
| Gene name | |
| Location | scaffold_06:35530..37016 |
| Strand | - |
| Gene length (bp) | 1486 |
| Transcript length (bp) | 1410 |
| Coding sequence length (bp) | 1410 |
| Protein length (aa) | 470 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00487 | FA_desaturase | Fatty acid desaturase | 1.8E-25 | 127 | 414 |
| PF11960 | DUF3474 | Domain of unknown function (DUF3474) | 8.3E-08 | 65 | 101 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | Yes |
| GO:0006629 | lipid metabolic process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | No |
| GO:0008152 | metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0008150 | biological_process | No |
| GO:0003674 | molecular_function | No |
| GO:0016491 | oxidoreductase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 291 | 310 | 19 |
| 2 | 317 | 339 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 348.18 | 169.29 | 527.06 |
| Alive | In ants, during behavior modification | 1021.09 | 365.34 | 1676.83 |
| Dead | In ants, recently dead | 521.98 | 227.45 | 816.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.003275 | yes |
| Dead | Fungus | 0.082311 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05404 MASPVSPSGPVLQRILSDSESSAAVSPLDSPRPSLSPSSTSLSSLASADGDSKYAGLLDTYGNAFTPPDFTIKDI RDAIPKHCFERSALTGYSYILRDMACLAITFVVFHNLVTPELIPSTPVRTALWAVYTFLQGLFGTGLWVIAHECG HGAFSPSRLINDVTGWVLHSALLVPYFSWQISHSKHHKATGNMERDMVFVPRTRDQQASRVGALVREMGELAEDT PIATLAHIIGQQLAGWPYYLITNVTGHNYHERQREGRGKGKSNGIGGGVNHFDPRSPLYESKDAKLIVLSDIGIG LAVAALYMLGNRFGWYNMAIWYFVPYLWVNSWLVGITFLQHTDPSLPHYTSEEWNFVRGAAATIDREMGFIGRHL LHGIIETHVLHHYVSSIPFYHADEATEAIRPVMGKHYRSDTEGGPLGFVRALWRSSRMCKWVEPSAEARGSAKGI LFFRNNNGLGTRPIGAKTE* |
| Coding | >Ophcf2|05404 ATGGCCTCTCCCGTCTCTCCCAGCGGCCCGGTGCTGCAGCGGATCTTGTCCGACTCGGAGTCGTCGGCTGCCGTC TCGCCGTTAGACTCGCCTCGGCCATCGCTCTCGCCTTCGTCGACGTCCCTCTCGTCGCTCGCCTCGGCTGACGGC GACTCCAAGTACGCTGGGCTCCTCGACACGTACGGAAACGCGTTTACGCCGCCCGACTTCACCATCAAGGACATC CGCGATGCCATTCCCAAGCACTGCTTCGAGCGCTCCGCCCTGACCGGCTACTCGTACATCCTCCGCGATATGGCT TGCCTCGCCATCACCTTTGTCGTCTTCCACAACCTCGTCACGCCCGAGTTGATCCCCTCAACGCCCGTCCGTACC GCCCTCTGGGCCGTCTACACCTTCCTGCAGGGCCTGTTTGGCACGGGTCTCTGGGTTATTGCTCACGAGTGCGGA CACGGTGCATTCTCCCCCTCGCGTCTCATCAACGACGTCACGGGATGGGTGCTGCACTCTGCCCTGCTCGTCCCC TACTTCAGCTGGCAAATCTCCCACAGCAAGCACCACAAGGCCACGGGCAACATGGAACGCGACATGGTCTTCGTG CCTCGCACCAGGGATCAGCAGGCCTCGCGTGTCGGCGCTCTTGTCCGCGAAATGGGCGAGCTGGCCGAGGACACG CCCATTGCCACCCTTGCTCACATCATCGGACAGCAGCTCGCCGGCTGGCCCTACTACCTTATCACCAACGTCACC GGCCACAACTATCACGAGCGTCAACGTGAGGGACGTGGCAAGGGGAAGAGCAACGGCATCGGCGGTGGTGTCAAT CACTTTGACCCTCGCAGCCCGCTTTACGAGAGCAAGGACGCCAAGCTCATCGTCCTGAGCGACATCGGCATTGGC CTGGCCGTCGCCGCGCTCTACATGCTCGGAAATCGCTTCGGCTGGTACAACATGGCCATCTGGTACTTTGTGCCG TATCTCTGGGTCAACTCGTGGCTGGTGGGCATCACTTTCCTACAGCACACGGATCCGTCTCTGCCTCACTACACT TCTGAGGAGTGGAATTTTGTGCGCGGTGCGGCTGCCACGATTGATCGTGAGATGGGCTTCATCGGCCGTCACCTG CTGCACGGCATCATCGAGACGCATGTGCTGCACCATTATGTCAGCAGCATCCCTTTTTACCACGCAGACGAGGCC ACCGAAGCCATCCGCCCTGTCATGGGTAAACATTACCGCTCCGACACAGAAGGTGGCCCGCTGGGCTTCGTCCGC GCCTTGTGGAGGAGTTCCAGGATGTGCAAATGGGTTGAGCCCAGTGCCGAGGCTCGTGGATCGGCCAAGGGTATC CTCTTCTTCCGCAACAACAATGGCTTGGGCACGAGGCCCATCGGTGCCAAGACGGAGTAA |
| Transcript | >Ophcf2|05404 ATGGCCTCTCCCGTCTCTCCCAGCGGCCCGGTGCTGCAGCGGATCTTGTCCGACTCGGAGTCGTCGGCTGCCGTC TCGCCGTTAGACTCGCCTCGGCCATCGCTCTCGCCTTCGTCGACGTCCCTCTCGTCGCTCGCCTCGGCTGACGGC GACTCCAAGTACGCTGGGCTCCTCGACACGTACGGAAACGCGTTTACGCCGCCCGACTTCACCATCAAGGACATC CGCGATGCCATTCCCAAGCACTGCTTCGAGCGCTCCGCCCTGACCGGCTACTCGTACATCCTCCGCGATATGGCT TGCCTCGCCATCACCTTTGTCGTCTTCCACAACCTCGTCACGCCCGAGTTGATCCCCTCAACGCCCGTCCGTACC GCCCTCTGGGCCGTCTACACCTTCCTGCAGGGCCTGTTTGGCACGGGTCTCTGGGTTATTGCTCACGAGTGCGGA CACGGTGCATTCTCCCCCTCGCGTCTCATCAACGACGTCACGGGATGGGTGCTGCACTCTGCCCTGCTCGTCCCC TACTTCAGCTGGCAAATCTCCCACAGCAAGCACCACAAGGCCACGGGCAACATGGAACGCGACATGGTCTTCGTG CCTCGCACCAGGGATCAGCAGGCCTCGCGTGTCGGCGCTCTTGTCCGCGAAATGGGCGAGCTGGCCGAGGACACG CCCATTGCCACCCTTGCTCACATCATCGGACAGCAGCTCGCCGGCTGGCCCTACTACCTTATCACCAACGTCACC GGCCACAACTATCACGAGCGTCAACGTGAGGGACGTGGCAAGGGGAAGAGCAACGGCATCGGCGGTGGTGTCAAT CACTTTGACCCTCGCAGCCCGCTTTACGAGAGCAAGGACGCCAAGCTCATCGTCCTGAGCGACATCGGCATTGGC CTGGCCGTCGCCGCGCTCTACATGCTCGGAAATCGCTTCGGCTGGTACAACATGGCCATCTGGTACTTTGTGCCG TATCTCTGGGTCAACTCGTGGCTGGTGGGCATCACTTTCCTACAGCACACGGATCCGTCTCTGCCTCACTACACT TCTGAGGAGTGGAATTTTGTGCGCGGTGCGGCTGCCACGATTGATCGTGAGATGGGCTTCATCGGCCGTCACCTG CTGCACGGCATCATCGAGACGCATGTGCTGCACCATTATGTCAGCAGCATCCCTTTTTACCACGCAGACGAGGCC ACCGAAGCCATCCGCCCTGTCATGGGTAAACATTACCGCTCCGACACAGAAGGTGGCCCGCTGGGCTTCGTCCGC GCCTTGTGGAGGAGTTCCAGGATGTGCAAATGGGTTGAGCCCAGTGCCGAGGCTCGTGGATCGGCCAAGGGTATC CTCTTCTTCCGCAACAACAATGGCTTGGGCACGAGGCCCATCGGTGCCAAGACGGAGTAA |
| Gene | >Ophcf2|05404 ATGGCCTCTCCCGTCTCTCCCAGCGGCCCGGTGCTGCAGCGGATCTTGTCCGACTCGGAGTCGTCGGCTGCCGTC TCGCCGTTAGACTCGCCTCGGCCATCGCTCTCGCCTTCGTCGACGTCCCTCTCGTCGCTCGCCTCGGCTGACGGC GACTCCAAGTACGCTGGGCTCCTCGACACGTACGGAAACGCGTTTACGCCGCCCGACTTCACCATCAAGGACATC CGCGATGCCATTCCCAAGCACTGCTTCGAGCGCTCCGCCCTGACCGGCTACTCGTACATCCTCCGCGATATGGCT TGCCTCGCCATCACCTTTGTCGTCTTCCACAACCTCGTCACGCCCGAGTTGATCCCCTCAACGCCCGTCCGTACC GCCCTCTGGGCCGTCTACACCTTCCTGCAGGGCCTGTTTGGCACGGGTCTCTGGGTTATTGCTCACGAGTGCGGA CACGGTGCATTCTCCCCCTCGCGTCTCATCAACGACGTCACGGGATGGGTGCTGCACTCTGCCCTGCTCGTCCCC TACTTCAGCTGGCAAATCTCCCACAGCAAGCACCACAAGGCCACGGGCAACATGGAACGCGACATGGTCTTCGTG CCTCGCACCAGGGATCAGCAGGCCTCGCGTGTCGGCGCTCTTGTCCGCGAAATGGGCGAGCTGGCCGAGGACACG CCCATTGCCACCCTTGCTCACATCATCGGACAGCAGCTCGCCGGCTGGCCCTACTACCTTATCACCAACGTCACC GGCCACAACTATCACGAGCGTCAACGTGAGGGACGTGGCAAGGGGAAGAGCAACGGCATCGGCGGTGGTGTCAAT CACTTTGACCCTCGCAGCCCGCTTTACGAGAGCAAGGACGCCAAGCTCATCGTCCTGAGCGACATCGGCATTGGC CTGGCCGTCGCCGCGCTCTACATGCTCGGAAATCGCTTCGGCTGGTACAACATGGCCATCTGGTACTTTGTGCCG TATCTCTGGGTCAACTCGTGGCTGGGTAGGGCTCACCTCTCTCTTCTCCTTGCTCCCTCACCACATACTCGTGCT CAATGCTAACCGAAATCTCCTGTCAGTGGGCATCACTTTCCTACAGCACACGGATCCGTCTCTGCCTCACTACAC TTCTGAGGAGTGGAATTTTGTGCGCGGTGCGGCTGCCACGATTGATCGTGAGATGGGCTTCATCGGCCGTCACCT GCTGCACGGCATCATCGAGACGCATGTGCTGCACCATTATGTCAGCAGCATCCCTTTTTACCACGCAGACGAGGC CACCGAAGCCATCCGCCCTGTCATGGGTAAACATTACCGCTCCGACACAGAAGGTGGCCCGCTGGGCTTCGTCCG CGCCTTGTGGAGGAGTTCCAGGATGTGCAAATGGGTTGAGCCCAGTGCCGAGGCTCGTGGATCGGCCAAGGGTAT CCTCTTCTTCCGCAACAACAATGGCTTGGGCACGAGGCCCATCGGTGCCAAGACGGAGTAA |