Protein ID | Ophcf2|05400 |
Gene name | |
Location | scaffold_06:9693..10659 |
Strand | + |
Gene length (bp) | 966 |
Transcript length (bp) | 966 |
Coding sequence length (bp) | 966 |
Protein length (aa) | 322 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05368 | NmrA | NmrA-like family | 7.3E-15 | 11 | 238 |
PF13460 | NAD_binding_10 | NAD(P)H-binding | 5.8E-11 | 14 | 176 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | Peroxisomal targeting signal | 0.4782 | 0.2691 | 0.0989 | 0.0356 | 0.2075 | 0.0019 | 0.0647 | 0.0721 | 0.1374 | 0.0929 |
Orthofinder run ID | 4 |
Orthogroup | 686 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|05400 MAVNGQIKKVCLIGANGLVGSVILDYLIQAATFDVSILRRTNSTSSTKAAHESLVTEIPISPELGLEELTHAFKG QDAVVLSVPLKDINMHMRIAEAACTAGVRRFIPAEFGSDSTHPLAIEHLQLFRDKTKVRQWCDELVEKSTLSGGC FSWTAVACGLLFDDGLREGYWFFDLNKRTARIMDGGTIRASTCTIPRAAQAVVAILQKPEATPNSLAFVQSFCPT QLEVLDALEKVTGCTWTREPFESTTFLEQERQKLATGELSLGAHVGSAGPVVSILVGQNWAAKKDFAMGPLGLED EVLDEVVAGVVASHEKAKTTK* |
Coding | >Ophcf2|05400 ATGGCCGTCAACGGACAGATCAAAAAGGTCTGTCTCATCGGTGCTAATGGACTTGTTGGTTCAGTTATCCTAGAC TATCTCATCCAAGCCGCAACGTTCGATGTCTCGATTCTACGTCGCACCAACTCTACCTCTTCAACTAAAGCTGCT CACGAATCTCTGGTCACCGAGATTCCCATCTCGCCTGAGTTGGGGCTCGAGGAGCTCACTCACGCTTTTAAAGGG CAGGATGCTGTCGTTCTCTCAGTTCCTCTCAAAGACATAAATATGCATATGCGCATCGCCGAAGCAGCTTGCACG GCTGGCGTCCGACGCTTCATCCCAGCCGAGTTTGGCAGTGATTCAACTCACCCTCTGGCGATAGAACATTTACAG CTGTTCCGTGATAAGACTAAAGTGCGGCAATGGTGTGACGAGTTGGTAGAGAAGAGCACTCTTTCAGGCGGGTGC TTCTCCTGGACCGCTGTTGCGTGTGGCCTTCTTTTTGATGATGGCCTTCGCGAGGGCTACTGGTTCTTTGACCTC AACAAGAGAACGGCTCGCATCATGGACGGGGGAACCATACGCGCTTCTACCTGTACCATTCCCCGTGCTGCCCAG GCAGTCGTCGCCATCTTGCAGAAGCCCGAAGCAACGCCAAATAGCCTTGCTTTCGTCCAGAGCTTCTGTCCGACG CAGCTAGAGGTCCTTGATGCGCTAGAAAAGGTCACGGGTTGCACATGGACCAGAGAGCCGTTTGAGTCCACTACG TTTCTCGAGCAGGAGCGGCAAAAGCTCGCAACCGGAGAGCTTAGTCTGGGGGCACACGTCGGCAGTGCTGGACCT GTTGTGAGCATCCTAGTGGGCCAGAACTGGGCCGCCAAGAAAGACTTCGCTATGGGACCGTTGGGGCTTGAAGAC GAGGTGTTGGACGAAGTTGTGGCTGGAGTGGTGGCGTCTCATGAGAAGGCGAAGACAACGAAGTAG |
Transcript | >Ophcf2|05400 ATGGCCGTCAACGGACAGATCAAAAAGGTCTGTCTCATCGGTGCTAATGGACTTGTTGGTTCAGTTATCCTAGAC TATCTCATCCAAGCCGCAACGTTCGATGTCTCGATTCTACGTCGCACCAACTCTACCTCTTCAACTAAAGCTGCT CACGAATCTCTGGTCACCGAGATTCCCATCTCGCCTGAGTTGGGGCTCGAGGAGCTCACTCACGCTTTTAAAGGG CAGGATGCTGTCGTTCTCTCAGTTCCTCTCAAAGACATAAATATGCATATGCGCATCGCCGAAGCAGCTTGCACG GCTGGCGTCCGACGCTTCATCCCAGCCGAGTTTGGCAGTGATTCAACTCACCCTCTGGCGATAGAACATTTACAG CTGTTCCGTGATAAGACTAAAGTGCGGCAATGGTGTGACGAGTTGGTAGAGAAGAGCACTCTTTCAGGCGGGTGC TTCTCCTGGACCGCTGTTGCGTGTGGCCTTCTTTTTGATGATGGCCTTCGCGAGGGCTACTGGTTCTTTGACCTC AACAAGAGAACGGCTCGCATCATGGACGGGGGAACCATACGCGCTTCTACCTGTACCATTCCCCGTGCTGCCCAG GCAGTCGTCGCCATCTTGCAGAAGCCCGAAGCAACGCCAAATAGCCTTGCTTTCGTCCAGAGCTTCTGTCCGACG CAGCTAGAGGTCCTTGATGCGCTAGAAAAGGTCACGGGTTGCACATGGACCAGAGAGCCGTTTGAGTCCACTACG TTTCTCGAGCAGGAGCGGCAAAAGCTCGCAACCGGAGAGCTTAGTCTGGGGGCACACGTCGGCAGTGCTGGACCT GTTGTGAGCATCCTAGTGGGCCAGAACTGGGCCGCCAAGAAAGACTTCGCTATGGGACCGTTGGGGCTTGAAGAC GAGGTGTTGGACGAAGTTGTGGCTGGAGTGGTGGCGTCTCATGAGAAGGCGAAGACAACGAAGTAG |
Gene | >Ophcf2|05400 ATGGCCGTCAACGGACAGATCAAAAAGGTCTGTCTCATCGGTGCTAATGGACTTGTTGGTTCAGTTATCCTAGAC TATCTCATCCAAGCCGCAACGTTCGATGTCTCGATTCTACGTCGCACCAACTCTACCTCTTCAACTAAAGCTGCT CACGAATCTCTGGTCACCGAGATTCCCATCTCGCCTGAGTTGGGGCTCGAGGAGCTCACTCACGCTTTTAAAGGG CAGGATGCTGTCGTTCTCTCAGTTCCTCTCAAAGACATAAATATGCATATGCGCATCGCCGAAGCAGCTTGCACG GCTGGCGTCCGACGCTTCATCCCAGCCGAGTTTGGCAGTGATTCAACTCACCCTCTGGCGATAGAACATTTACAG CTGTTCCGTGATAAGACTAAAGTGCGGCAATGGTGTGACGAGTTGGTAGAGAAGAGCACTCTTTCAGGCGGGTGC TTCTCCTGGACCGCTGTTGCGTGTGGCCTTCTTTTTGATGATGGCCTTCGCGAGGGCTACTGGTTCTTTGACCTC AACAAGAGAACGGCTCGCATCATGGACGGGGGAACCATACGCGCTTCTACCTGTACCATTCCCCGTGCTGCCCAG GCAGTCGTCGCCATCTTGCAGAAGCCCGAAGCAACGCCAAATAGCCTTGCTTTCGTCCAGAGCTTCTGTCCGACG CAGCTAGAGGTCCTTGATGCGCTAGAAAAGGTCACGGGTTGCACATGGACCAGAGAGCCGTTTGAGTCCACTACG TTTCTCGAGCAGGAGCGGCAAAAGCTCGCAACCGGAGAGCTTAGTCTGGGGGCACACGTCGGCAGTGCTGGACCT GTTGTGAGCATCCTAGTGGGCCAGAACTGGGCCGCCAAGAAAGACTTCGCTATGGGACCGTTGGGGCTTGAAGAC GAGGTGTTGGACGAAGTTGTGGCTGGAGTGGTGGCGTCTCATGAGAAGGCGAAGACAACGAAGTAG |