© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|05397 |
| Gene name | |
| Location | scaffold_05:3579691..3581500 |
| Strand | + |
| Gene length (bp) | 1809 |
| Transcript length (bp) | 1758 |
| Coding sequence length (bp) | 1758 |
| Protein length (aa) | 586 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04113 | Gpi16 | Gpi16 subunit, GPI transamidase component | 4.6E-235 | 14 | 574 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0042765 | GPI-anchor transamidase complex | Yes |
| GO:0016255 | attachment of GPI anchor to protein | Yes |
| GO:0019538 | protein metabolic process | No |
| GO:1905368 | peptidase complex | No |
| GO:0036211 | protein modification process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0008303 | caspase complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1905369 | endopeptidase complex | No |
| GO:0043412 | macromolecule modification | No |
| GO:0098796 | membrane protein complex | No |
| GO:0008150 | biological_process | No |
| GO:1902494 | catalytic complex | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 530 | 552 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 98.42 | 55.07 | 141.77 |
| Alive | In ants, during behavior modification | 78.22 | 43.54 | 112.89 |
| Dead | In ants, recently dead | 71.79 | 40.69 | 102.88 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.255773 | no |
| Alive | Dead | 0.658901 | no |
| Dead | Fungus | 0.106397 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05397 MRCPPALLFVANLVASLASFAAAADYHEQLTLRPLPLSALLASFNFRSNTSLADFEAHHFRLFPRSLAQILQHAR TRELHLRFTLGRWDAERWGARPWGGVREGGTGVELWAWLDRDADDNWRTLTNALSGLFCASLNFIDSTRTTRPVV SFQPEGNHSNATLGTTSLLHGVLPHEVVCTENLTPFLKLLPCKGKAGIASLLDGHKLFDASFQSMAIDVRPVCDS HGVCVLQMEQTIDMVLDVERSKRPRDNPIPRPPPSQKLLCDTSKAYHGDGVCFPTDHLHGQHWKLSEIFGRAMRG VCPLTDGITPPVCLQVPDSRFVFATGASRDLRDTSGMSRCYTPDEDGVEFNFELTKPSSTDAAASKDLVRPETPL LYAERSFMGHGQEHGGVQAILTNPGDAEVEFVYMESLPWFMRIYLHTLSTRISSSSVATNASSRIIEEIYYRPAL DRTRGTQLELLMRIPPLCTVFLTYDFSKSILRYTEYPPDANRGFDVAAAVITTRAPHAGLNLRTTSLLLYLPTPD FSMPYNVIIFTSTAIALTFGGLYNILVRRLVGADEAPNTMLKTKVARLLCLLKTRLQGST* |
| Coding | >Ophcf2|05397 ATGCGTTGCCCTCCTGCACTCCTCTTCGTCGCGAATCTCGTGGCCAGCCTCGCGAGCTTCGCTGCCGCTGCCGAT TACCACGAGCAGCTCACTCTACGCCCGCTACCGCTCTCCGCTCTCCTCGCGAGCTTCAACTTTCGATCCAATACG TCTCTCGCCGACTTCGAGGCTCATCACTTTCGTCTCTTCCCCCGATCTCTGGCCCAAATTCTACAGCATGCTCGC ACACGCGAGCTCCATCTGCGCTTCACCCTCGGCCGCTGGGACGCCGAGCGATGGGGCGCTCGGCCCTGGGGAGGT GTTCGCGAGGGTGGCACCGGAGTCGAGCTGTGGGCTTGGCTGGACAGAGACGCTGACGATAACTGGCGGACACTG ACCAACGCCCTGTCTGGCCTCTTCTGCGCTTCGCTCAACTTCATCGACTCGACGCGCACGACTCGCCCCGTCGTT TCTTTTCAACCTGAGGGAAATCACTCAAACGCCACTCTCGGCACCACGAGCCTGCTTCACGGCGTGCTCCCTCAC GAGGTCGTTTGTACCGAAAATTTGACGCCCTTCCTCAAGCTGCTGCCCTGCAAGGGGAAGGCTGGAATCGCCAGT CTGCTAGATGGACACAAGCTGTTTGACGCCTCGTTCCAGAGCATGGCTATTGATGTGAGGCCCGTCTGCGACTCT CATGGCGTCTGTGTTCTTCAGATGGAACAGACCATCGACATGGTGCTGGATGTCGAACGCTCCAAGCGACCAAGA GATAACCCCATTCCGAGACCTCCCCCCAGCCAGAAGCTTCTCTGTGACACGTCCAAGGCCTACCACGGTGATGGG GTCTGCTTCCCAACCGATCATCTGCATGGCCAACATTGGAAGCTATCCGAAATCTTCGGCCGCGCCATGAGGGGC GTGTGTCCGTTGACCGACGGCATCACGCCTCCAGTGTGTTTGCAGGTCCCCGACTCCCGATTCGTGTTCGCCACC GGCGCCTCCCGCGATCTCAGAGACACCAGCGGAATGTCAAGGTGTTACACACCGGATGAAGACGGCGTCGAGTTC AACTTTGAGCTCACGAAACCAAGCTCTACTGACGCGGCGGCATCCAAGGACCTGGTCCGGCCGGAGACGCCGCTT CTTTACGCTGAACGAAGCTTCATGGGCCATGGCCAGGAACACGGCGGCGTTCAGGCCATATTGACCAACCCCGGT GACGCCGAGGTCGAGTTTGTCTATATGGAATCGCTTCCCTGGTTCATGCGAATCTACCTCCACACACTATCCACG CGTATCTCGTCCTCGTCGGTCGCCACAAACGCCTCGTCGCGCATCATCGAGGAGATCTACTACCGTCCGGCTCTC GACCGCACCCGCGGCACTCAGCTGGAGCTCCTCATGCGCATCCCCCCCCTCTGCACCGTTTTTCTCACCTACGAC TTCTCCAAGTCCATCCTGCGGTATACCGAGTATCCGCCCGACGCCAACCGCGGCTTCGACGTCGCCGCCGCCGTC ATCACCACTCGCGCTCCGCATGCTGGCCTCAACTTGCGCACTACCAGCCTGTTGCTATATCTGCCGACGCCGGAC TTTTCCATGCCGTACAATGTCATCATCTTCACCTCGACGGCTATAGCTCTGACCTTTGGCGGCTTGTACAACATC CTTGTTAGAAGGCTGGTGGGAGCAGACGAGGCGCCGAATACGATGCTCAAGACCAAGGTCGCGCGGCTTCTGTGT CTGCTTAAGACGCGTCTGCAAGGGAGCACTTGA |
| Transcript | >Ophcf2|05397 ATGCGTTGCCCTCCTGCACTCCTCTTCGTCGCGAATCTCGTGGCCAGCCTCGCGAGCTTCGCTGCCGCTGCCGAT TACCACGAGCAGCTCACTCTACGCCCGCTACCGCTCTCCGCTCTCCTCGCGAGCTTCAACTTTCGATCCAATACG TCTCTCGCCGACTTCGAGGCTCATCACTTTCGTCTCTTCCCCCGATCTCTGGCCCAAATTCTACAGCATGCTCGC ACACGCGAGCTCCATCTGCGCTTCACCCTCGGCCGCTGGGACGCCGAGCGATGGGGCGCTCGGCCCTGGGGAGGT GTTCGCGAGGGTGGCACCGGAGTCGAGCTGTGGGCTTGGCTGGACAGAGACGCTGACGATAACTGGCGGACACTG ACCAACGCCCTGTCTGGCCTCTTCTGCGCTTCGCTCAACTTCATCGACTCGACGCGCACGACTCGCCCCGTCGTT TCTTTTCAACCTGAGGGAAATCACTCAAACGCCACTCTCGGCACCACGAGCCTGCTTCACGGCGTGCTCCCTCAC GAGGTCGTTTGTACCGAAAATTTGACGCCCTTCCTCAAGCTGCTGCCCTGCAAGGGGAAGGCTGGAATCGCCAGT CTGCTAGATGGACACAAGCTGTTTGACGCCTCGTTCCAGAGCATGGCTATTGATGTGAGGCCCGTCTGCGACTCT CATGGCGTCTGTGTTCTTCAGATGGAACAGACCATCGACATGGTGCTGGATGTCGAACGCTCCAAGCGACCAAGA GATAACCCCATTCCGAGACCTCCCCCCAGCCAGAAGCTTCTCTGTGACACGTCCAAGGCCTACCACGGTGATGGG GTCTGCTTCCCAACCGATCATCTGCATGGCCAACATTGGAAGCTATCCGAAATCTTCGGCCGCGCCATGAGGGGC GTGTGTCCGTTGACCGACGGCATCACGCCTCCAGTGTGTTTGCAGGTCCCCGACTCCCGATTCGTGTTCGCCACC GGCGCCTCCCGCGATCTCAGAGACACCAGCGGAATGTCAAGGTGTTACACACCGGATGAAGACGGCGTCGAGTTC AACTTTGAGCTCACGAAACCAAGCTCTACTGACGCGGCGGCATCCAAGGACCTGGTCCGGCCGGAGACGCCGCTT CTTTACGCTGAACGAAGCTTCATGGGCCATGGCCAGGAACACGGCGGCGTTCAGGCCATATTGACCAACCCCGGT GACGCCGAGGTCGAGTTTGTCTATATGGAATCGCTTCCCTGGTTCATGCGAATCTACCTCCACACACTATCCACG CGTATCTCGTCCTCGTCGGTCGCCACAAACGCCTCGTCGCGCATCATCGAGGAGATCTACTACCGTCCGGCTCTC GACCGCACCCGCGGCACTCAGCTGGAGCTCCTCATGCGCATCCCCCCCCTCTGCACCGTTTTTCTCACCTACGAC TTCTCCAAGTCCATCCTGCGGTATACCGAGTATCCGCCCGACGCCAACCGCGGCTTCGACGTCGCCGCCGCCGTC ATCACCACTCGCGCTCCGCATGCTGGCCTCAACTTGCGCACTACCAGCCTGTTGCTATATCTGCCGACGCCGGAC TTTTCCATGCCGTACAATGTCATCATCTTCACCTCGACGGCTATAGCTCTGACCTTTGGCGGCTTGTACAACATC CTTGTTAGAAGGCTGGTGGGAGCAGACGAGGCGCCGAATACGATGCTCAAGACCAAGGTCGCGCGGCTTCTGTGT CTGCTTAAGACGCGTCTGCAAGGGAGCACTTGA |
| Gene | >Ophcf2|05397 ATGCGTTGCCCTCCTGCACTCCTCTTCGTCGCGAATCTCGTGGCCAGCCTCGCGAGCTTCGCTGCCGCTGCCGAT TACCACGAGCAGCTCACTCTACGCCCGCTACCGCTCTCCGCTCTCCTCGCGAGCTTCAACTTTCGATCCAATACG TCTCTCGCCGACTTCGAGGCTCATCACTTTCGTCTCTTCCCCCGATCTCTGGCCCAAATTCTACAGCATGCTCGC ACACGCGAGCTCCATCTGCGCTTCACCCTCGGCCGCTGGGACGCCGAGCGATGGGGCGCTCGGCCCTGGGGAGGT GTTCGCGAGGGTGGCACCGGAGTCGAGCTGTGGGCTTGGCTGGACAGAGACGCTGACGATAACTGGCGGACACTG ACCAACGCCCTGTCTGGCCTCTTCTGCGCTTCGCTCAACTTCATCGACTCGACGCGCACGACTCGCCCCGTCGTT TCTTTTCAACCTGAGGGAAATCACTCAAACGCCACTCTCGGCACCACGAGCCTGCTTCACGGCGTGCTCCCTCAC GAGGTCGTTTGTACCGAAAATTTGACGCCCTTCCTCAAGCTGCTGCCCTGCAAGGGGAAGGCTGGAATCGCCAGT CTGCTAGATGGACACAAGCTGTTTGACGCCTCGTTCCAGAGCATGGCTATTGATGTGAGGCCCGTCTGCGACTCT CATGGCGTCTGTGTTCTTCAGATGGAACAGACCATCGACATGGTGCTGGATGTCGAACGCTCCAAGCGACCAAGA GGTTCGCTCTTCTCTTCCCCACCCCGAGAGTTGCAGTCTGACTGGCTATTAGATAACCCCATTCCGAGACCTCCC CCCAGCCAGAAGCTTCTCTGTGACACGTCCAAGGCCTACCACGGTGATGGGGTCTGCTTCCCAACCGATCATCTG CATGGCCAACATTGGAAGCTATCCGAAATCTTCGGCCGCGCCATGAGGGGCGTGTGTCCGTTGACCGACGGCATC ACGCCTCCAGTGTGTTTGCAGGTCCCCGACTCCCGATTCGTGTTCGCCACCGGCGCCTCCCGCGATCTCAGAGAC ACCAGCGGAATGTCAAGGTGTTACACACCGGATGAAGACGGCGTCGAGTTCAACTTTGAGCTCACGAAACCAAGC TCTACTGACGCGGCGGCATCCAAGGACCTGGTCCGGCCGGAGACGCCGCTTCTTTACGCTGAACGAAGCTTCATG GGCCATGGCCAGGAACACGGCGGCGTTCAGGCCATATTGACCAACCCCGGTGACGCCGAGGTCGAGTTTGTCTAT ATGGAATCGCTTCCCTGGTTCATGCGAATCTACCTCCACACACTATCCACGCGTATCTCGTCCTCGTCGGTCGCC ACAAACGCCTCGTCGCGCATCATCGAGGAGATCTACTACCGTCCGGCTCTCGACCGCACCCGCGGCACTCAGCTG GAGCTCCTCATGCGCATCCCCCCCCTCTGCACCGTTTTTCTCACCTACGACTTCTCCAAGTCCATCCTGCGGTAT ACCGAGTATCCGCCCGACGCCAACCGCGGCTTCGACGTCGCCGCCGCCGTCATCACCACTCGCGCTCCGCATGCT GGCCTCAACTTGCGCACTACCAGCCTGTTGCTATATCTGCCGACGCCGGACTTTTCCATGCCGTACAATGTCATC ATCTTCACCTCGACGGCTATAGCTCTGACCTTTGGCGGCTTGTACAACATCCTTGTTAGAAGGCTGGTGGGAGCA GACGAGGCGCCGAATACGATGCTCAAGACCAAGGTCGCGCGGCTTCTGTGTCTGCTTAAGACGCGTCTGCAAGGG AGCACTTGA |