Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|05373
Gene name
Location	scaffold_05:3431274..3432020
Strand	-
Gene length (bp)	746
Transcript length (bp)	684
Coding sequence length (bp)	684
Protein length (aa)	228

PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 34	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	172	194	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	0.00	0.00	0.00
Alive	In ants, during behavior modification	10.07	1.81	18.32
Dead	In ants, recently dead	2.93	0.25	5.62

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.000238	yes
Alive	Dead	0.000238	yes
Dead	Fungus	0.000238	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|05373 MACFYKDGRPAINGAYYPCRNGVVFNATSATAAFNATGLRMCCEPKGPDRCLPNGLCDIPGERGYLYRGACDNPR GDGCRSICPEVNPYSWTEVKLCEPGVYCCGPDKNAERARDCCSNRSARFLLPDLEVMSGSKLNGFTGSPSTASST TQASSPTSSPNTSKPSSPSAAVIAGPVVGGAVALALLVVAILLFRRSRQKRRQWTPSEQKSPPVEVDGRLRPGEL AG*
Coding	>Ophcf2\|05373 ATGGCTTGCTTCTACAAGGACGGCAGGCCGGCCATCAACGGAGCCTACTACCCGTGCCGCAACGGTGTCGTCTTC AACGCTACTTCCGCGACGGCCGCCTTCAACGCTACGGGGTTGCGCATGTGCTGTGAGCCCAAGGGGCCTGATCGC TGCTTGCCGAATGGGCTTTGCGACATTCCGGGGGAGAGGGGATATCTCTACCGCGGGGCGTGTGATAATCCCCGA GGCGATGGCTGTCGCAGTATCTGTCCTGAGGTCAATCCATATTCTTGGACAGAGGTCAAGCTCTGCGAGCCTGGA GTCTACTGCTGCGGCCCAGACAAGAACGCCGAGAGGGCTAGAGACTGCTGTTCCAACCGCTCAGCTCGCTTTCTA CTACCCGACCTCGAGGTCATGTCGGGCTCCAAGTTAAACGGCTTCACCGGCTCTCCATCAACAGCCTCCTCTACC ACCCAGGCTTCGTCACCGACGTCCTCTCCAAACACGTCAAAACCTTCGTCCCCTTCCGCAGCCGTCATTGCCGGG CCCGTTGTCGGAGGCGCCGTTGCTCTCGCTCTACTTGTCGTCGCCATATTGCTCTTTCGGAGATCACGGCAAAAG AGGAGGCAGTGGACGCCGTCGGAGCAAAAGTCACCACCGGTCGAGGTGGATGGAAGGCTGCGGCCAGGCGAGTTG GCTGGTTGA
Transcript	>Ophcf2\|05373 ATGGCTTGCTTCTACAAGGACGGCAGGCCGGCCATCAACGGAGCCTACTACCCGTGCCGCAACGGTGTCGTCTTC AACGCTACTTCCGCGACGGCCGCCTTCAACGCTACGGGGTTGCGCATGTGCTGTGAGCCCAAGGGGCCTGATCGC TGCTTGCCGAATGGGCTTTGCGACATTCCGGGGGAGAGGGGATATCTCTACCGCGGGGCGTGTGATAATCCCCGA GGCGATGGCTGTCGCAGTATCTGTCCTGAGGTCAATCCATATTCTTGGACAGAGGTCAAGCTCTGCGAGCCTGGA GTCTACTGCTGCGGCCCAGACAAGAACGCCGAGAGGGCTAGAGACTGCTGTTCCAACCGCTCAGCTCGCTTTCTA CTACCCGACCTCGAGGTCATGTCGGGCTCCAAGTTAAACGGCTTCACCGGCTCTCCATCAACAGCCTCCTCTACC ACCCAGGCTTCGTCACCGACGTCCTCTCCAAACACGTCAAAACCTTCGTCCCCTTCCGCAGCCGTCATTGCCGGG CCCGTTGTCGGAGGCGCCGTTGCTCTCGCTCTACTTGTCGTCGCCATATTGCTCTTTCGGAGATCACGGCAAAAG AGGAGGCAGTGGACGCCGTCGGAGCAAAAGTCACCACCGGTCGAGGTGGATGGAAGGCTGCGGCCAGGCGAGTTG GCTGGTTGA
Gene	>Ophcf2\|05373 ATGGCTTGCTTCTACAAGGACGGCAGGCCGGCCATCAACGGAGCCTACTACCCGTGCCGCAACGGTGTCGTCTTC AACGCTACTTCCGCGACGGCCGCCTTCAACGCTACGGGGTTGCGCATGTGCTGTGAGCCCAAGGGGCCTGATCGC TGCTTGCCGAATGGGCTTTGCGACATTCCGGGGGAGAGGGGATATCTCTACCGCGGGGCGTGTGATAATCCCCGA GGCGATGGCTGTCGCAGTATCTGTCCTGAGGGTTCGTACCTCTTATCTTCTTCTTGTTTAAATTACCCCTAACGT TGTTCTCGTCGGTTGCAGTCAATCCATATTCTTGGACAGAGGTCAAGCTCTGCGAGCCTGGAGTCTACTGCTGCG GCCCAGACAAGAACGCCGAGAGGGCTAGAGACTGCTGTTCCAACCGCTCAGCTCGCTTTCTACTACCCGACCTCG AGGTCATGTCGGGCTCCAAGTTAAACGGCTTCACCGGCTCTCCATCAACAGCCTCCTCTACCACCCAGGCTTCGT CACCGACGTCCTCTCCAAACACGTCAAAACCTTCGTCCCCTTCCGCAGCCGTCATTGCCGGGCCCGTTGTCGGAG GCGCCGTTGCTCTCGCTCTACTTGTCGTCGCCATATTGCTCTTTCGGAGATCACGGCAAAAGAGGAGGCAGTGGA CGCCGTCGGAGCAAAAGTCACCACCGGTCGAGGTGGATGGAAGGCTGCGGCCAGGCGAGTTGGCTGGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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