Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05347
Gene name
Locationscaffold_05:3369632..3370343
Strand+
Gene length (bp)711
Transcript length (bp)657
Coding sequence length (bp)657
Protein length (aa) 219

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13774 Longin Regulated-SNARE-like domain 5.3E-25 37 120
PF00957 Synaptobrevin Synaptobrevin 2.3E-14 136 215

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

Domain # Start End Length
1 198 215 17

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05347
MILSTQISRLDGLMLCASVDEDQTPSAPLQESKTQVRQVLRRLTRTSAPQASIECGSGHYTMHYLIDSDVIFLCI
CERSYPRKLAFTYLSDLSREFATSHPPSQTHNPALRPYAFMDFDSFIAKTRTTYADSRAAQNLDKLNDELRDVTK
VMTKNIEDLLYRGDSLDRMGEMSSRLRDDSKRYRRAAVRINWELLLKQYGPFAGVGFLVLLFVYLRFF*
Coding >Ophcf2|05347
ATGATTCTATCAACGCAAATATCCCGCCTCGACGGCCTCATGCTCTGCGCCTCAGTAGACGAAGACCAAACGCCC
TCAGCCCCCCTCCAAGAATCCAAAACCCAAGTCCGACAGGTCCTCCGCCGCCTAACGCGCACGTCAGCGCCCCAA
GCCTCCATCGAATGCGGCTCCGGCCACTACACGATGCACTACCTCATCGACTCGGACGTCATCTTCCTCTGCATC
TGCGAGAGGTCCTACCCGCGCAAGCTGGCATTCACATACCTTTCCGACCTGTCCCGCGAGTTCGCGACCAGTCAT
CCGCCCTCGCAGACGCATAATCCTGCGCTGCGTCCGTATGCGTTTATGGATTTCGATAGTTTTATTGCCAAGACG
AGGACGACGTATGCGGATTCGCGCGCGGCGCAGAACTTGGACAAGTTGAATGATGAGCTGAGGGATGTTACAAAG
GTCATGACGAAGAATATCGAGGATCTGCTCTATCGGGGGGATAGTTTGGATCGCATGGGGGAGATGAGTAGCCGG
TTGAGGGATGATAGTAAGCGGTATCGGAGAGCGGCGGTGAGGATCAACTGGGAGTTGTTGTTGAAGCAGTATGGG
CCCTTTGCGGGTGTTGGCTTCCTGGTGTTGCTGTTTGTCTATCTGCGCTTCTTCTAA
Transcript >Ophcf2|05347
ATGATTCTATCAACGCAAATATCCCGCCTCGACGGCCTCATGCTCTGCGCCTCAGTAGACGAAGACCAAACGCCC
TCAGCCCCCCTCCAAGAATCCAAAACCCAAGTCCGACAGGTCCTCCGCCGCCTAACGCGCACGTCAGCGCCCCAA
GCCTCCATCGAATGCGGCTCCGGCCACTACACGATGCACTACCTCATCGACTCGGACGTCATCTTCCTCTGCATC
TGCGAGAGGTCCTACCCGCGCAAGCTGGCATTCACATACCTTTCCGACCTGTCCCGCGAGTTCGCGACCAGTCAT
CCGCCCTCGCAGACGCATAATCCTGCGCTGCGTCCGTATGCGTTTATGGATTTCGATAGTTTTATTGCCAAGACG
AGGACGACGTATGCGGATTCGCGCGCGGCGCAGAACTTGGACAAGTTGAATGATGAGCTGAGGGATGTTACAAAG
GTCATGACGAAGAATATCGAGGATCTGCTCTATCGGGGGGATAGTTTGGATCGCATGGGGGAGATGAGTAGCCGG
TTGAGGGATGATAGTAAGCGGTATCGGAGAGCGGCGGTGAGGATCAACTGGGAGTTGTTGTTGAAGCAGTATGGG
CCCTTTGCGGGTGTTGGCTTCCTGGTGTTGCTGTTTGTCTATCTGCGCTTCTTCTAA
Gene >Ophcf2|05347
ATGATTCTATCAACGCAAATATCCCGCCTCGACGGTTCTTCCCCTTCCCTGAAACCCCCCCCCCCATCCCATCAG
CTAACCATCCCAGGCCTCATGCTCTGCGCCTCAGTAGACGAAGACCAAACGCCCTCAGCCCCCCTCCAAGAATCC
AAAACCCAAGTCCGACAGGTCCTCCGCCGCCTAACGCGCACGTCAGCGCCCCAAGCCTCCATCGAATGCGGCTCC
GGCCACTACACGATGCACTACCTCATCGACTCGGACGTCATCTTCCTCTGCATCTGCGAGAGGTCCTACCCGCGC
AAGCTGGCATTCACATACCTTTCCGACCTGTCCCGCGAGTTCGCGACCAGTCATCCGCCCTCGCAGACGCATAAT
CCTGCGCTGCGTCCGTATGCGTTTATGGATTTCGATAGTTTTATTGCCAAGACGAGGACGACGTATGCGGATTCG
CGCGCGGCGCAGAACTTGGACAAGTTGAATGATGAGCTGAGGGATGTTACAAAGGTCATGACGAAGAATATCGAG
GATCTGCTCTATCGGGGGGATAGTTTGGATCGCATGGGGGAGATGAGTAGCCGGTTGAGGGATGATAGTAAGCGG
TATCGGAGAGCGGCGGTGAGGATCAACTGGGAGTTGTTGTTGAAGCAGTATGGGCCCTTTGCGGGTGTTGGCTTC
CTGGTGTTGCTGTTTGTCTATCTGCGCTTCTTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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