Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05341
Gene name
Locationscaffold_05:3352265..3352710
Strand+
Gene length (bp)445
Transcript length (bp)390
Coding sequence length (bp)390
Protein length (aa) 130

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04133 Vps55 Vacuolar protein sorting 55 2.5E-44 9 126

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 4 26 22
2 33 52 19
3 72 94 22
4 101 123 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05341
MPAAGLKTIIALSFVLAVGFLLVILSCALFKVYYPLLVVATFVVAPLPNWICARCANPDDFVESSGAAVLDLGRF
FTGFFVVMGIALPIVLAHSDLIRVEAMIMSIVGGLLIYGTIISFGMFFHEDQEF*
Coding >Ophcf2|05341
ATGCCCGCTGCCGGCCTCAAGACCATCATCGCGCTATCCTTCGTCCTCGCCGTCGGCTTCCTTCTCGTCATCCTT
TCCTGCGCCCTCTTCAAGGTCTACTATCCGCTTCTCGTCGTCGCTACCTTCGTCGTCGCCCCGCTTCCGAATTGG
ATCTGCGCTCGATGCGCCAACCCGGATGATTTCGTCGAGAGTTCGGGTGCTGCTGTTCTCGATCTTGGTCGTTTC
TTCACTGGCTTCTTCGTCGTGATGGGCATTGCCCTACCTATTGTTCTCGCCCACTCGGATCTCATCAGGGTCGAA
GCCATGATCATGTCCATCGTCGGCGGCCTCTTGATCTACGGGACCATTATAAGCTTCGGCATGTTCTTTCACGAA
GACCAGGAGTTTTGA
Transcript >Ophcf2|05341
ATGCCCGCTGCCGGCCTCAAGACCATCATCGCGCTATCCTTCGTCCTCGCCGTCGGCTTCCTTCTCGTCATCCTT
TCCTGCGCCCTCTTCAAGGTCTACTATCCGCTTCTCGTCGTCGCTACCTTCGTCGTCGCCCCGCTTCCGAATTGG
ATCTGCGCTCGATGCGCCAACCCGGATGATTTCGTCGAGAGTTCGGGTGCTGCTGTTCTCGATCTTGGTCGTTTC
TTCACTGGCTTCTTCGTCGTGATGGGCATTGCCCTACCTATTGTTCTCGCCCACTCGGATCTCATCAGGGTCGAA
GCCATGATCATGTCCATCGTCGGCGGCCTCTTGATCTACGGGACCATTATAAGCTTCGGCATGTTCTTTCACGAA
GACCAGGAGTTTTGA
Gene >Ophcf2|05341
ATGCCCGCTGCCGGCCTCAAGACCATCATCGCGCTATCCTTCGTCCTCGCCGTCGGCTTCCTTCTCGTCATCCTT
TCCTGCGCCCTCTTCAAGGTCTACTATCCGCTTCTCGTCGTCGCTACCTTCGTCGTCGCCCCGCTTCCGAATTGG
ATCTGCGCTCGATGCGCCAACCCGGATGATTTCGTCGAGAGTTCGGGTGCTGCTGTTCTCGATCTTGGTCGTTTC
TTCACTGGCTTCTTCGTCGTGATGGGCATTGGTTCGTCTTTCCTCTCCCTCAACTCGGTTGATTTCCTGACTTGT
GCTTTTCGTAGCCCTACCTATTGTTCTCGCCCACTCGGATCTCATCAGGGTCGAAGCCATGATCATGTCCATCGT
CGGCGGCCTCTTGATCTACGGGACCATTATAAGCTTCGGCATGTTCTTTCACGAAGACCAGGAGTTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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