Protein ID | Ophcf2|05312 |
Gene name | |
Location | scaffold_05:3263602..3264512 |
Strand | + |
Gene length (bp) | 910 |
Transcript length (bp) | 783 |
Coding sequence length (bp) | 783 |
Protein length (aa) | 261 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF20238 | DUF6595 | Family of unknown function (DUF6595) | 3.9E-32 | 19 | 164 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide|Transmembrane domain | 0.1231 | 0.0934 | 0.2975 | 0.6224 | 0.1623 | 0.0075 | 0.1322 | 0.4857 | 0.275 | 0.0321 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 196 | 218 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 337 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|05312 MLLRRLGFVAAVAAQQHLGPAAFLWPPDRVWGSAAGHTAPCGSVTGVGNRTEFPLRNARVALVAQDDSWDAQIAI AFRADPKSDADFSLLTNPSFLRNSDPGHSCLAVADAAPSARAGDKATLQIRYSSGYDDANQEFLYACTDIIFVRP ERFRPPSLSCFNASVVETDYDDMPWPDGFAAPADDGDDGRLSGGAIAGIVVAAVSLTLLLLTAALLLYRRRQQRS RSLRQQNSLRAVKWDEQAAARGPDSPVNVKLRDLS* |
Coding | >Ophcf2|05312 ATGCTTCTTCGGCGTCTCGGTTTCGTCGCTGCCGTCGCTGCTCAGCAGCATCTTGGCCCTGCCGCGTTTTTGTGG CCTCCGGACCGGGTGTGGGGGTCGGCGGCCGGACATACGGCTCCGTGCGGGTCCGTAACGGGCGTGGGGAACCGG ACCGAGTTTCCGCTACGGAACGCGAGAGTCGCTCTAGTCGCTCAGGACGACTCATGGGATGCCCAAATCGCCATC GCCTTCCGAGCCGATCCCAAGTCCGACGCAGACTTCTCCCTCCTGACGAACCCATCCTTCCTCCGGAACAGCGAT CCGGGCCACAGCTGCCTCGCCGTCGCCGATGCCGCTCCCTCGGCCCGCGCCGGAGATAAGGCCACGCTCCAGATC CGGTACAGCTCCGGCTACGACGATGCGAACCAGGAGTTTCTCTACGCCTGCACCGACATCATCTTCGTTCGGCCG GAGCGCTTCCGTCCGCCGTCGCTGTCGTGCTTCAACGCCTCCGTCGTCGAGACGGATTACGACGATATGCCTTGG CCCGATGGCTTTGCTGCTCCGGCCGATGACGGAGACGACGGTCGGCTTTCGGGGGGTGCCATTGCGGGAATCGTC GTTGCGGCCGTTTCCTTGACCTTGTTGCTACTCACCGCGGCGCTGTTGCTCTATCGTCGTAGACAGCAGCGGTCA CGCAGCTTGCGGCAGCAGAACTCTCTTCGTGCTGTCAAGTGGGATGAGCAGGCTGCCGCTCGCGGGCCCGATTCC CCGGTCAACGTGAAGCTGAGGGATTTGTCGTAG |
Transcript | >Ophcf2|05312 ATGCTTCTTCGGCGTCTCGGTTTCGTCGCTGCCGTCGCTGCTCAGCAGCATCTTGGCCCTGCCGCGTTTTTGTGG CCTCCGGACCGGGTGTGGGGGTCGGCGGCCGGACATACGGCTCCGTGCGGGTCCGTAACGGGCGTGGGGAACCGG ACCGAGTTTCCGCTACGGAACGCGAGAGTCGCTCTAGTCGCTCAGGACGACTCATGGGATGCCCAAATCGCCATC GCCTTCCGAGCCGATCCCAAGTCCGACGCAGACTTCTCCCTCCTGACGAACCCATCCTTCCTCCGGAACAGCGAT CCGGGCCACAGCTGCCTCGCCGTCGCCGATGCCGCTCCCTCGGCCCGCGCCGGAGATAAGGCCACGCTCCAGATC CGGTACAGCTCCGGCTACGACGATGCGAACCAGGAGTTTCTCTACGCCTGCACCGACATCATCTTCGTTCGGCCG GAGCGCTTCCGTCCGCCGTCGCTGTCGTGCTTCAACGCCTCCGTCGTCGAGACGGATTACGACGATATGCCTTGG CCCGATGGCTTTGCTGCTCCGGCCGATGACGGAGACGACGGTCGGCTTTCGGGGGGTGCCATTGCGGGAATCGTC GTTGCGGCCGTTTCCTTGACCTTGTTGCTACTCACCGCGGCGCTGTTGCTCTATCGTCGTAGACAGCAGCGGTCA CGCAGCTTGCGGCAGCAGAACTCTCTTCGTGCTGTCAAGTGGGATGAGCAGGCTGCCGCTCGCGGGCCCGATTCC CCGGTCAACGTGAAGCTGAGGGATTTGTCGTAG |
Gene | >Ophcf2|05312 ATGCTTCTTCGGCGTCTCGGTTTCGTCGCTGCCGTCGCTGCTCAGCAGCATCTTGGCCCTGCCGCGTTTTTGTGG CCTCCGGACCGGGTGTGGGGGTCGGCGGCCGGACATACGGCTCCGTGCGGGTCCGTAACGGGCGTGGGGAACCGG ACCGAGTTTCCGCTACGTGAGGACCTCATCCCTCCCGTCGACTCCGTCTCTGTTCTCTTGACTGATGATTAAGCA CAAAACGACTCACAGGGAACGCGAGAGTCGCTCTAGTCGCTCAGGACGACTCATGGGATGCCCAAATCGCCATCG CCTTCCGAGCCGGTCCGCCTCAACCCGGACGAAAAAGACGGAGCCGGAAGCTGACAAGGGAACAGATCCCAAGTC CGACGCAGACTTCTCCCTCCTGACGAACCCATCCTTCCTCCGGAACAGCGATCCGGGCCACAGCTGCCTCGCCGT CGCCGATGCCGCTCCCTCGGCCCGCGCCGGAGATAAGGCCACGCTCCAGATCCGGTACAGCTCCGGCTACGACGA TGCGAACCAGGAGTTTCTCTACGCCTGCACCGACATCATCTTCGTTCGGCCGGAGCGCTTCCGTCCGCCGTCGCT GTCGTGCTTCAACGCCTCCGTCGTCGAGACGGATTACGACGATATGCCTTGGCCCGATGGCTTTGCTGCTCCGGC CGATGACGGAGACGACGGTCGGCTTTCGGGGGGTGCCATTGCGGGAATCGTCGTTGCGGCCGTTTCCTTGACCTT GTTGCTACTCACCGCGGCGCTGTTGCTCTATCGTCGTAGACAGCAGCGGTCACGCAGCTTGCGGCAGCAGAACTC TCTTCGTGCTGTCAAGTGGGATGAGCAGGCTGCCGCTCGCGGGCCCGATTCCCCGGTCAACGTGAAGCTGAGGGA TTTGTCGTAG |