Protein ID | Ophcf2|05307 |
Gene name | |
Location | scaffold_05:3204725..3206596 |
Strand | + |
Gene length (bp) | 1871 |
Transcript length (bp) | 1701 |
Coding sequence length (bp) | 1701 |
Protein length (aa) | 567 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00324 | AA_permease | Amino acid permease | 5.3E-133 | 63 | 524 |
PF13520 | AA_permease_2 | Amino acid permease | 9.2E-30 | 62 | 496 |
GO Term | Description | Terminal node |
---|---|---|
GO:0022857 | transmembrane transporter activity | Yes |
GO:0016020 | membrane | Yes |
GO:0055085 | transmembrane transport | Yes |
GO:0005575 | cellular_component | No |
GO:0051179 | localization | No |
GO:0008150 | biological_process | No |
GO:0006810 | transport | No |
GO:0009987 | cellular process | No |
GO:0003674 | molecular_function | No |
GO:0005215 | transporter activity | No |
GO:0110165 | cellular anatomical entity | No |
GO:0051234 | establishment of localization | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 44 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 64 | 86 | 22 |
2 | 93 | 115 | 22 |
3 | 144 | 166 | 22 |
4 | 173 | 195 | 22 |
5 | 199 | 221 | 22 |
6 | 290 | 309 | 19 |
7 | 344 | 366 | 22 |
8 | 387 | 409 | 22 |
9 | 419 | 441 | 22 |
10 | 461 | 483 | 22 |
11 | 503 | 520 | 17 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Fungus | Fungus in pure culture | 302.28 | 143.93 | 460.64 |
Alive | In ants, during behavior modification | 431.29 | 16.70 | 845.87 |
Dead | In ants, recently dead | 196.17 | 89.74 | 302.59 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Alive | Fungus | 0.290922 | no |
Alive | Dead | 0.012565 | yes |
Dead | Fungus | 0.063325 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|05307 MTDPEKSGVGVEESKVLEASPAFAATFQDEDKWTRCGLSLKSFQKRHYGRGVVELDRSIKTRHLHMIAIGGSIGA GFFVGSGSALSKGGPASLLLCFAIVGFMVFNIVFALGELAIMYPISGGFYTYATRFVDPSFGFAVGWNYLFLWLS VLPLELTVCSLVIQYWDEKTSVAVWITIFLVAVIVINIFGGLGFAEEEFVASMIKLTAITSFLIIALVLVLGGGP RDGRYNEYWGARYWFEPGAFRNGLRGFCSVFVTAAFSLTGTELVGLAAAETRNPVKSLPGAVKRVFWRIVVFYIL GLFFVGLLISSEDSRLLANKAITDVKASPWVLIGLYARLKGLDHFMNAIILVSVLSIGVSSVYGGSRTLTALAQQ GYAPKLFTYIDRSGRPLPAVILIILTGPLAYVNLNASGPVVFEWLQALSGLAVMFSWAAICLAHIRFRKAWAYNG HSLDEIPFQALLGVWGSWISLTLCFLVLAAQFYTAIKPVGKPGFNTVEGFFKNWLAFPVVIAFWICGSVWKRSGW LRIDQIDVDTGRRELDWEEVRAYRDHVQRLPAWRRVLHKLF* |
Coding | >Ophcf2|05307 ATGACGGATCCGGAGAAGAGCGGCGTGGGCGTGGAAGAGTCCAAGGTGCTCGAAGCCAGCCCTGCGTTCGCGGCC ACGTTCCAGGATGAGGACAAGTGGACGAGATGCGGCCTCAGCCTCAAGTCGTTCCAGAAGCGACATTATGGCCGC GGCGTGGTCGAGCTGGATCGGTCCATCAAGACGCGTCATCTGCATATGATTGCCATCGGAGGTTCCATAGGCGCT GGTTTCTTCGTCGGCTCCGGCAGTGCTCTCAGCAAAGGCGGTCCTGCTTCTCTGTTGCTGTGCTTCGCCATTGTC GGCTTCATGGTCTTCAATATCGTATTCGCTCTCGGTGAACTCGCCATCATGTATCCCATCTCGGGCGGCTTCTAC ACCTACGCGACCCGTTTCGTCGACCCTTCATTCGGCTTCGCCGTCGGTTGGAACTACCTCTTCCTATGGCTCAGC GTGCTGCCGCTTGAACTGACCGTCTGCTCGCTCGTGATACAATACTGGGACGAAAAGACGAGCGTGGCGGTCTGG ATAACCATCTTCCTCGTTGCCGTCATCGTCATCAACATATTTGGCGGCCTAGGCTTCGCCGAGGAGGAGTTTGTC GCCTCTATGATCAAGTTGACGGCCATTACCTCGTTCCTCATCATCGCTCTCGTCCTGGTACTCGGAGGAGGGCCT CGAGATGGCCGCTATAACGAGTACTGGGGCGCGCGCTATTGGTTCGAGCCCGGCGCGTTTCGCAACGGCCTTCGA GGCTTCTGCTCCGTCTTCGTCACCGCTGCCTTTTCGCTGACCGGCACGGAGCTCGTTGGCCTCGCGGCGGCTGAG ACGCGGAATCCGGTCAAATCGTTGCCTGGCGCCGTGAAGCGCGTCTTCTGGCGCATCGTCGTCTTCTACATCCTC GGTCTGTTCTTCGTCGGATTGCTTATTTCCTCAGAAGACTCTCGGCTCCTGGCCAACAAGGCTATTACCGATGTC AAGGCCTCACCTTGGGTCCTGATCGGACTCTATGCCCGTCTTAAGGGTCTCGACCACTTTATGAACGCCATCATT CTCGTCTCCGTCCTGTCCATCGGCGTCTCCAGCGTGTACGGCGGGTCCCGGACACTCACGGCGCTCGCTCAGCAA GGTTACGCTCCGAAGCTGTTCACCTACATTGATCGATCAGGACGACCGCTGCCCGCCGTCATACTCATCATCTTG ACAGGGCCTCTCGCCTATGTCAACCTCAACGCCTCGGGCCCCGTCGTCTTTGAATGGTTACAGGCTCTCTCCGGG CTGGCCGTCATGTTCTCTTGGGCCGCTATCTGCCTGGCTCATATCCGCTTCCGCAAAGCCTGGGCCTATAATGGG CACTCGCTCGACGAGATTCCCTTCCAGGCGCTTCTCGGCGTCTGGGGTTCCTGGATTTCTCTCACCCTGTGCTTC TTGGTCCTCGCCGCTCAATTCTACACGGCCATCAAGCCCGTCGGGAAGCCGGGCTTCAACACGGTCGAGGGCTTC TTCAAGAACTGGCTCGCCTTTCCCGTCGTCATCGCTTTCTGGATTTGCGGCTCCGTTTGGAAACGATCCGGCTGG CTCCGCATCGATCAGATCGACGTCGACACCGGCCGCCGCGAGCTGGACTGGGAGGAGGTCAGGGCGTACCGCGAT CATGTCCAACGGCTACCGGCATGGCGTCGGGTTTTGCACAAGCTCTTTTGA |
Transcript | >Ophcf2|05307 ATGACGGATCCGGAGAAGAGCGGCGTGGGCGTGGAAGAGTCCAAGGTGCTCGAAGCCAGCCCTGCGTTCGCGGCC ACGTTCCAGGATGAGGACAAGTGGACGAGATGCGGCCTCAGCCTCAAGTCGTTCCAGAAGCGACATTATGGCCGC GGCGTGGTCGAGCTGGATCGGTCCATCAAGACGCGTCATCTGCATATGATTGCCATCGGAGGTTCCATAGGCGCT GGTTTCTTCGTCGGCTCCGGCAGTGCTCTCAGCAAAGGCGGTCCTGCTTCTCTGTTGCTGTGCTTCGCCATTGTC GGCTTCATGGTCTTCAATATCGTATTCGCTCTCGGTGAACTCGCCATCATGTATCCCATCTCGGGCGGCTTCTAC ACCTACGCGACCCGTTTCGTCGACCCTTCATTCGGCTTCGCCGTCGGTTGGAACTACCTCTTCCTATGGCTCAGC GTGCTGCCGCTTGAACTGACCGTCTGCTCGCTCGTGATACAATACTGGGACGAAAAGACGAGCGTGGCGGTCTGG ATAACCATCTTCCTCGTTGCCGTCATCGTCATCAACATATTTGGCGGCCTAGGCTTCGCCGAGGAGGAGTTTGTC GCCTCTATGATCAAGTTGACGGCCATTACCTCGTTCCTCATCATCGCTCTCGTCCTGGTACTCGGAGGAGGGCCT CGAGATGGCCGCTATAACGAGTACTGGGGCGCGCGCTATTGGTTCGAGCCCGGCGCGTTTCGCAACGGCCTTCGA GGCTTCTGCTCCGTCTTCGTCACCGCTGCCTTTTCGCTGACCGGCACGGAGCTCGTTGGCCTCGCGGCGGCTGAG ACGCGGAATCCGGTCAAATCGTTGCCTGGCGCCGTGAAGCGCGTCTTCTGGCGCATCGTCGTCTTCTACATCCTC GGTCTGTTCTTCGTCGGATTGCTTATTTCCTCAGAAGACTCTCGGCTCCTGGCCAACAAGGCTATTACCGATGTC AAGGCCTCACCTTGGGTCCTGATCGGACTCTATGCCCGTCTTAAGGGTCTCGACCACTTTATGAACGCCATCATT CTCGTCTCCGTCCTGTCCATCGGCGTCTCCAGCGTGTACGGCGGGTCCCGGACACTCACGGCGCTCGCTCAGCAA GGTTACGCTCCGAAGCTGTTCACCTACATTGATCGATCAGGACGACCGCTGCCCGCCGTCATACTCATCATCTTG ACAGGGCCTCTCGCCTATGTCAACCTCAACGCCTCGGGCCCCGTCGTCTTTGAATGGTTACAGGCTCTCTCCGGG CTGGCCGTCATGTTCTCTTGGGCCGCTATCTGCCTGGCTCATATCCGCTTCCGCAAAGCCTGGGCCTATAATGGG CACTCGCTCGACGAGATTCCCTTCCAGGCGCTTCTCGGCGTCTGGGGTTCCTGGATTTCTCTCACCCTGTGCTTC TTGGTCCTCGCCGCTCAATTCTACACGGCCATCAAGCCCGTCGGGAAGCCGGGCTTCAACACGGTCGAGGGCTTC TTCAAGAACTGGCTCGCCTTTCCCGTCGTCATCGCTTTCTGGATTTGCGGCTCCGTTTGGAAACGATCCGGCTGG CTCCGCATCGATCAGATCGACGTCGACACCGGCCGCCGCGAGCTGGACTGGGAGGAGGTCAGGGCGTACCGCGAT CATGTCCAACGGCTACCGGCATGGCGTCGGGTTTTGCACAAGCTCTTTTGA |
Gene | >Ophcf2|05307 ATGACGGATCCGGAGAAGAGCGGCGTGGGCGTGGAAGAGTCCAAGGTGCTCGAAGCCAGCCCTGCGTTCGCGGCC ACGTTCCAGGATGAGGACAAGTGGACGAGATGCGGCCTCAGCCTCAAGTCGTTCCAGAAGCGACATTATGGCCGC GGCGTGGTCGAGCTGGATCGGTCCATCAAGACGCGTCATCTGCATATGATTGCCATCGGAGGTTCCATAGGCGCT GGTTTCTTCGTCGGCTCCGGCAGTGCTCTCAGCAAAGGCGTGAGTTAGGACTGTATGTTGTATTGGTGAAAAGAA GGCTGGCTGACGGCGTTGTCAAAGGGTCCTGCTTCTCTGTTGCTGTGCTTCGCCATTGTCGGCTTCATGGTCTTC AATATCGGTATGAAAGAAGCCAGTCGATCGTTTGGACGCCCTTGACTCACGCTTTCCAGTATTCGCTCTCGGTGA ACTCGCCATCATGTATCCCATCTCGGGCGGCTTCTACACCTACGCGACCCGTTTCGTCGACCCTTCATTCGGCTT CGCCGTCGGTTGGAACTACCTCTTCCTATGGCTCAGCGTGCTGCCGCTTGAACTGACCGTCTGCTCGCTCGTGAT ACAATACTGGGACGAAAAGACGAGCGTGGCGGTCTGGATAACCATCTTCCTCGTTGCCGTCATCGTCATCAACAT ATTTGGCGGCCTAGGCTTCGCCGAGGAGGAGTTTGTCGCCTCTATGATCAAGTTGACGGCCATTACCTCGTTCCT CATCATCGCTCTCGTCCTGGTACTCGGAGGAGGGCCTCGAGATGGCCGCTATAACGAGTACTGGGGCGCGCGCTA TTGGTTCGAGCCCGGCGCGTTTCGCAACGGCCTTCGAGGCTTCTGCTCCGTCTTCGTCACCGCTGCCTTTTCGCT GACCGGCACGGAGCTCGTTGGCCTCGCGGCGGCTGAGACGCGGAATCCGGTCAAATCGTTGCCTGGCGCCGTGAA GCGCGTCTTCTGGCGCATCGTCGTCTTCTACATCCTCGGTCTGTTCTTCGTCGGATTGCTTATTTCCTCAGAAGA CTCTCGGCTCCTGGCCAACAAGGCTATTACCGATGTCAAGGCCTCACCTTGGGTCCTGATCGGACTCTATGCCCG TCTTAAGGGTCTCGACCACTTTATGAACGCCATCATTCTCGTCTCCGTCCTGTCCATCGGCGTCTCCAGCGTGTA CGGCGGGTCCCGGACACTCACGGCGCTCGCTCAGCAAGGTTACGCTCCGAAGCTGTTCACCTACATTGATCGATC AGGACGACCGCTGCCCGCCGTCATACTCATCATCTTGACAGGGCCTCTCGCCTATGTCAACCTCAACGCCTCGGG CCCCGTCGTCTTTGAATGGTTACAGGCTCTCTCCGGGCTGGCCGTCATGTTCTCTTGGGCCGCTATCTGCCTGGC TCATATCCGCTTCCGCAAAGCCTGGGCCTATAATGGGCACTCGCTCGACGAGATTCCCTTCCAGGCGCTTCTCGG CGTCTGGGGTTCCTGGATTTCTCTCACCCTGTGCTTCTTGGTCCTCGCCGCTCAAGTAGGTCGTTAAAAATGTCT TTTAGAGAGAGGAACAGTCATTGATGAAACGTCTGCAGTTCTACACGGCCATCAAGCCCGTCGGGAAGCCGGGCT TCAACACGGTCGAGGGCTTCTTCAAGAACTGGCTCGCCTTTCCCGTCGTCATCGCTTTCTGGATTTGCGGCTCCG TTTGGAAACGATCCGGCTGGCTCCGCATCGATCAGATCGACGTCGACACCGGCCGCCGCGAGCTGGACTGGGAGG AGGTCAGGGCGTACCGCGATCATGTCCAACGGCTACCGGCATGGCGTCGGGTTTTGCACAAGCTCTTTTGA |