© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05307 |
| Gene name | |
| Location | scaffold_05:3204725..3206596 |
| Strand | + |
| Gene length (bp) | 1871 |
| Transcript length (bp) | 1701 |
| Coding sequence length (bp) | 1701 |
| Protein length (aa) | 567 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 5.3E-133 | 63 | 524 |
| PF13520 | AA_permease_2 | Amino acid permease | 9.2E-30 | 62 | 496 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 64 | 86 | 22 |
| 2 | 93 | 115 | 22 |
| 3 | 144 | 166 | 22 |
| 4 | 173 | 195 | 22 |
| 5 | 199 | 221 | 22 |
| 6 | 290 | 309 | 19 |
| 7 | 344 | 366 | 22 |
| 8 | 387 | 409 | 22 |
| 9 | 419 | 441 | 22 |
| 10 | 461 | 483 | 22 |
| 11 | 503 | 520 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05307 MTDPEKSGVGVEESKVLEASPAFAATFQDEDKWTRCGLSLKSFQKRHYGRGVVELDRSIKTRHLHMIAIGGSIGA GFFVGSGSALSKGGPASLLLCFAIVGFMVFNIVFALGELAIMYPISGGFYTYATRFVDPSFGFAVGWNYLFLWLS VLPLELTVCSLVIQYWDEKTSVAVWITIFLVAVIVINIFGGLGFAEEEFVASMIKLTAITSFLIIALVLVLGGGP RDGRYNEYWGARYWFEPGAFRNGLRGFCSVFVTAAFSLTGTELVGLAAAETRNPVKSLPGAVKRVFWRIVVFYIL GLFFVGLLISSEDSRLLANKAITDVKASPWVLIGLYARLKGLDHFMNAIILVSVLSIGVSSVYGGSRTLTALAQQ GYAPKLFTYIDRSGRPLPAVILIILTGPLAYVNLNASGPVVFEWLQALSGLAVMFSWAAICLAHIRFRKAWAYNG HSLDEIPFQALLGVWGSWISLTLCFLVLAAQFYTAIKPVGKPGFNTVEGFFKNWLAFPVVIAFWICGSVWKRSGW LRIDQIDVDTGRRELDWEEVRAYRDHVQRLPAWRRVLHKLF* |
| Coding | >Ophcf2|05307 ATGACGGATCCGGAGAAGAGCGGCGTGGGCGTGGAAGAGTCCAAGGTGCTCGAAGCCAGCCCTGCGTTCGCGGCC ACGTTCCAGGATGAGGACAAGTGGACGAGATGCGGCCTCAGCCTCAAGTCGTTCCAGAAGCGACATTATGGCCGC GGCGTGGTCGAGCTGGATCGGTCCATCAAGACGCGTCATCTGCATATGATTGCCATCGGAGGTTCCATAGGCGCT GGTTTCTTCGTCGGCTCCGGCAGTGCTCTCAGCAAAGGCGGTCCTGCTTCTCTGTTGCTGTGCTTCGCCATTGTC GGCTTCATGGTCTTCAATATCGTATTCGCTCTCGGTGAACTCGCCATCATGTATCCCATCTCGGGCGGCTTCTAC ACCTACGCGACCCGTTTCGTCGACCCTTCATTCGGCTTCGCCGTCGGTTGGAACTACCTCTTCCTATGGCTCAGC GTGCTGCCGCTTGAACTGACCGTCTGCTCGCTCGTGATACAATACTGGGACGAAAAGACGAGCGTGGCGGTCTGG ATAACCATCTTCCTCGTTGCCGTCATCGTCATCAACATATTTGGCGGCCTAGGCTTCGCCGAGGAGGAGTTTGTC GCCTCTATGATCAAGTTGACGGCCATTACCTCGTTCCTCATCATCGCTCTCGTCCTGGTACTCGGAGGAGGGCCT CGAGATGGCCGCTATAACGAGTACTGGGGCGCGCGCTATTGGTTCGAGCCCGGCGCGTTTCGCAACGGCCTTCGA GGCTTCTGCTCCGTCTTCGTCACCGCTGCCTTTTCGCTGACCGGCACGGAGCTCGTTGGCCTCGCGGCGGCTGAG ACGCGGAATCCGGTCAAATCGTTGCCTGGCGCCGTGAAGCGCGTCTTCTGGCGCATCGTCGTCTTCTACATCCTC GGTCTGTTCTTCGTCGGATTGCTTATTTCCTCAGAAGACTCTCGGCTCCTGGCCAACAAGGCTATTACCGATGTC AAGGCCTCACCTTGGGTCCTGATCGGACTCTATGCCCGTCTTAAGGGTCTCGACCACTTTATGAACGCCATCATT CTCGTCTCCGTCCTGTCCATCGGCGTCTCCAGCGTGTACGGCGGGTCCCGGACACTCACGGCGCTCGCTCAGCAA GGTTACGCTCCGAAGCTGTTCACCTACATTGATCGATCAGGACGACCGCTGCCCGCCGTCATACTCATCATCTTG ACAGGGCCTCTCGCCTATGTCAACCTCAACGCCTCGGGCCCCGTCGTCTTTGAATGGTTACAGGCTCTCTCCGGG CTGGCCGTCATGTTCTCTTGGGCCGCTATCTGCCTGGCTCATATCCGCTTCCGCAAAGCCTGGGCCTATAATGGG CACTCGCTCGACGAGATTCCCTTCCAGGCGCTTCTCGGCGTCTGGGGTTCCTGGATTTCTCTCACCCTGTGCTTC TTGGTCCTCGCCGCTCAATTCTACACGGCCATCAAGCCCGTCGGGAAGCCGGGCTTCAACACGGTCGAGGGCTTC TTCAAGAACTGGCTCGCCTTTCCCGTCGTCATCGCTTTCTGGATTTGCGGCTCCGTTTGGAAACGATCCGGCTGG CTCCGCATCGATCAGATCGACGTCGACACCGGCCGCCGCGAGCTGGACTGGGAGGAGGTCAGGGCGTACCGCGAT CATGTCCAACGGCTACCGGCATGGCGTCGGGTTTTGCACAAGCTCTTTTGA |
| Transcript | >Ophcf2|05307 ATGACGGATCCGGAGAAGAGCGGCGTGGGCGTGGAAGAGTCCAAGGTGCTCGAAGCCAGCCCTGCGTTCGCGGCC ACGTTCCAGGATGAGGACAAGTGGACGAGATGCGGCCTCAGCCTCAAGTCGTTCCAGAAGCGACATTATGGCCGC GGCGTGGTCGAGCTGGATCGGTCCATCAAGACGCGTCATCTGCATATGATTGCCATCGGAGGTTCCATAGGCGCT GGTTTCTTCGTCGGCTCCGGCAGTGCTCTCAGCAAAGGCGGTCCTGCTTCTCTGTTGCTGTGCTTCGCCATTGTC GGCTTCATGGTCTTCAATATCGTATTCGCTCTCGGTGAACTCGCCATCATGTATCCCATCTCGGGCGGCTTCTAC ACCTACGCGACCCGTTTCGTCGACCCTTCATTCGGCTTCGCCGTCGGTTGGAACTACCTCTTCCTATGGCTCAGC GTGCTGCCGCTTGAACTGACCGTCTGCTCGCTCGTGATACAATACTGGGACGAAAAGACGAGCGTGGCGGTCTGG ATAACCATCTTCCTCGTTGCCGTCATCGTCATCAACATATTTGGCGGCCTAGGCTTCGCCGAGGAGGAGTTTGTC GCCTCTATGATCAAGTTGACGGCCATTACCTCGTTCCTCATCATCGCTCTCGTCCTGGTACTCGGAGGAGGGCCT CGAGATGGCCGCTATAACGAGTACTGGGGCGCGCGCTATTGGTTCGAGCCCGGCGCGTTTCGCAACGGCCTTCGA GGCTTCTGCTCCGTCTTCGTCACCGCTGCCTTTTCGCTGACCGGCACGGAGCTCGTTGGCCTCGCGGCGGCTGAG ACGCGGAATCCGGTCAAATCGTTGCCTGGCGCCGTGAAGCGCGTCTTCTGGCGCATCGTCGTCTTCTACATCCTC GGTCTGTTCTTCGTCGGATTGCTTATTTCCTCAGAAGACTCTCGGCTCCTGGCCAACAAGGCTATTACCGATGTC AAGGCCTCACCTTGGGTCCTGATCGGACTCTATGCCCGTCTTAAGGGTCTCGACCACTTTATGAACGCCATCATT CTCGTCTCCGTCCTGTCCATCGGCGTCTCCAGCGTGTACGGCGGGTCCCGGACACTCACGGCGCTCGCTCAGCAA GGTTACGCTCCGAAGCTGTTCACCTACATTGATCGATCAGGACGACCGCTGCCCGCCGTCATACTCATCATCTTG ACAGGGCCTCTCGCCTATGTCAACCTCAACGCCTCGGGCCCCGTCGTCTTTGAATGGTTACAGGCTCTCTCCGGG CTGGCCGTCATGTTCTCTTGGGCCGCTATCTGCCTGGCTCATATCCGCTTCCGCAAAGCCTGGGCCTATAATGGG CACTCGCTCGACGAGATTCCCTTCCAGGCGCTTCTCGGCGTCTGGGGTTCCTGGATTTCTCTCACCCTGTGCTTC TTGGTCCTCGCCGCTCAATTCTACACGGCCATCAAGCCCGTCGGGAAGCCGGGCTTCAACACGGTCGAGGGCTTC TTCAAGAACTGGCTCGCCTTTCCCGTCGTCATCGCTTTCTGGATTTGCGGCTCCGTTTGGAAACGATCCGGCTGG CTCCGCATCGATCAGATCGACGTCGACACCGGCCGCCGCGAGCTGGACTGGGAGGAGGTCAGGGCGTACCGCGAT CATGTCCAACGGCTACCGGCATGGCGTCGGGTTTTGCACAAGCTCTTTTGA |
| Gene | >Ophcf2|05307 ATGACGGATCCGGAGAAGAGCGGCGTGGGCGTGGAAGAGTCCAAGGTGCTCGAAGCCAGCCCTGCGTTCGCGGCC ACGTTCCAGGATGAGGACAAGTGGACGAGATGCGGCCTCAGCCTCAAGTCGTTCCAGAAGCGACATTATGGCCGC GGCGTGGTCGAGCTGGATCGGTCCATCAAGACGCGTCATCTGCATATGATTGCCATCGGAGGTTCCATAGGCGCT GGTTTCTTCGTCGGCTCCGGCAGTGCTCTCAGCAAAGGCGTGAGTTAGGACTGTATGTTGTATTGGTGAAAAGAA GGCTGGCTGACGGCGTTGTCAAAGGGTCCTGCTTCTCTGTTGCTGTGCTTCGCCATTGTCGGCTTCATGGTCTTC AATATCGGTATGAAAGAAGCCAGTCGATCGTTTGGACGCCCTTGACTCACGCTTTCCAGTATTCGCTCTCGGTGA ACTCGCCATCATGTATCCCATCTCGGGCGGCTTCTACACCTACGCGACCCGTTTCGTCGACCCTTCATTCGGCTT CGCCGTCGGTTGGAACTACCTCTTCCTATGGCTCAGCGTGCTGCCGCTTGAACTGACCGTCTGCTCGCTCGTGAT ACAATACTGGGACGAAAAGACGAGCGTGGCGGTCTGGATAACCATCTTCCTCGTTGCCGTCATCGTCATCAACAT ATTTGGCGGCCTAGGCTTCGCCGAGGAGGAGTTTGTCGCCTCTATGATCAAGTTGACGGCCATTACCTCGTTCCT CATCATCGCTCTCGTCCTGGTACTCGGAGGAGGGCCTCGAGATGGCCGCTATAACGAGTACTGGGGCGCGCGCTA TTGGTTCGAGCCCGGCGCGTTTCGCAACGGCCTTCGAGGCTTCTGCTCCGTCTTCGTCACCGCTGCCTTTTCGCT GACCGGCACGGAGCTCGTTGGCCTCGCGGCGGCTGAGACGCGGAATCCGGTCAAATCGTTGCCTGGCGCCGTGAA GCGCGTCTTCTGGCGCATCGTCGTCTTCTACATCCTCGGTCTGTTCTTCGTCGGATTGCTTATTTCCTCAGAAGA CTCTCGGCTCCTGGCCAACAAGGCTATTACCGATGTCAAGGCCTCACCTTGGGTCCTGATCGGACTCTATGCCCG TCTTAAGGGTCTCGACCACTTTATGAACGCCATCATTCTCGTCTCCGTCCTGTCCATCGGCGTCTCCAGCGTGTA CGGCGGGTCCCGGACACTCACGGCGCTCGCTCAGCAAGGTTACGCTCCGAAGCTGTTCACCTACATTGATCGATC AGGACGACCGCTGCCCGCCGTCATACTCATCATCTTGACAGGGCCTCTCGCCTATGTCAACCTCAACGCCTCGGG CCCCGTCGTCTTTGAATGGTTACAGGCTCTCTCCGGGCTGGCCGTCATGTTCTCTTGGGCCGCTATCTGCCTGGC TCATATCCGCTTCCGCAAAGCCTGGGCCTATAATGGGCACTCGCTCGACGAGATTCCCTTCCAGGCGCTTCTCGG CGTCTGGGGTTCCTGGATTTCTCTCACCCTGTGCTTCTTGGTCCTCGCCGCTCAAGTAGGTCGTTAAAAATGTCT TTTAGAGAGAGGAACAGTCATTGATGAAACGTCTGCAGTTCTACACGGCCATCAAGCCCGTCGGGAAGCCGGGCT TCAACACGGTCGAGGGCTTCTTCAAGAACTGGCTCGCCTTTCCCGTCGTCATCGCTTTCTGGATTTGCGGCTCCG TTTGGAAACGATCCGGCTGGCTCCGCATCGATCAGATCGACGTCGACACCGGCCGCCGCGAGCTGGACTGGGAGG AGGTCAGGGCGTACCGCGATCATGTCCAACGGCTACCGGCATGGCGTCGGGTTTTGCACAAGCTCTTTTGA |