Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05291
Gene name
Locationscaffold_05:3162113..3163670
Strand-
Gene length (bp)1557
Transcript length (bp)1512
Coding sequence length (bp)1512
Protein length (aa) 504

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11931 SF3a60_Prp9_C SF3a60/Prp9 C-terminal 2.4E-54 384 503
PF16837 SF3A3 Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 2.9E-17 129 175
PF12108 SF3a60_bindingd Splicing factor SF3a60 binding domain 6.3E-08 74 100
PF12874 zf-met Zinc-finger of C2H2 type 7.2E-06 252 275

GO

GO Term Description Terminal node
GO:0005681 spliceosomal complex Yes
GO:0000398 mRNA splicing, via spliceosome Yes
GO:0003723 RNA binding Yes
GO:0008152 metabolic process No
GO:0032991 protein-containing complex No
GO:0043170 macromolecule metabolic process No
GO:0005488 binding No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0000375 RNA splicing, via transesterification reactions No
GO:0046483 heterocycle metabolic process No
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0009987 cellular process No
GO:0006396 RNA processing No
GO:0044237 cellular metabolic process No
GO:0097159 organic cyclic compound binding No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044238 primary metabolic process No
GO:0005575 cellular_component No
GO:1990904 ribonucleoprotein complex No
GO:0006807 nitrogen compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0140513 nuclear protein-containing complex No
GO:0003674 molecular_function No
GO:0008380 RNA splicing No
GO:0090304 nucleic acid metabolic process No
GO:0006397 mRNA processing No
GO:0016071 mRNA metabolic process No
GO:0008150 biological_process No
GO:0034641 cellular nitrogen compound metabolic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.5583 0.7938 0.0255 0.0155 0.0923 0.0016 0.1645 0.0547 0.0771 0.0025

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup3278
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|3171
Ophiocordyceps australis map64 (Brazil) OphauB2|1733
Ophiocordyceps camponoti-floridani Ophcf2|05291 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|373
Ophiocordyceps kimflemingae Ophio5|8282
Ophiocordyceps subramaniannii Hirsu2|5998

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05291
MLTVLEEERYIHEDLERIEQGIADRMRDEPNHIRNRLNRDHEVAQLLEQMQQQSTNLIAIHEDKTRSAARELEQL
NTSDPFGLFYANLNELREHHSRYPNEQAENPELRYKPKPATDADGLVPTIVDSLFSGEEAYGRFFDLNTCHEAFL
NLPNVKRLNYLQYLENFDDFTPGHGGVKRAEKLSDQYLQYVGQLSEYLISFRKRTKPLDDTEKVLREFDQEFDKA
WETDSVKGWQLDKPSEATKTSEETIIWCDDCEKEFRNPNTYRCHLSGKKHVKAAERRKQRKADGEQRTQTRKIGT
VSTTRTKERAIAEREHRVKRLASSMSTERSDTRVNVERRQGMTERERQQELENLLNASETAKGNGEEAAEEGEDG
EEKIYNPLKLPLAWDGKPIPFWLYRLHGLGVEFHCEICGNFVYMGRRAFDKHFGEPRHIYGLKCLGITNVTLFRD
ITKIEEAMKLWDRLQKEQKKNKVDEGSIVQMEDAEGNVMPEKVYIDLQKQGLL*
Coding >Ophcf2|05291
ATGCTCACAGTTCTCGAGGAGGAGAGATACATACACGAAGATCTCGAGCGCATCGAACAAGGCATAGCCGACCGC
ATGCGCGACGAGCCAAACCATATCCGAAATCGCCTCAACCGAGACCATGAAGTGGCTCAGCTACTCGAGCAGATG
CAGCAGCAGTCGACAAATCTCATCGCAATTCACGAGGACAAGACCCGCTCGGCGGCGCGCGAGCTCGAGCAATTA
AACACATCCGACCCTTTCGGCCTTTTCTACGCGAACCTCAACGAGCTCCGCGAGCATCACTCCAGATATCCCAAC
GAGCAGGCCGAAAACCCGGAGCTTCGATACAAGCCAAAGCCGGCGACCGATGCCGATGGACTCGTTCCAACCATC
GTCGACTCTCTCTTCTCCGGAGAGGAGGCTTACGGCCGTTTCTTCGATCTCAACACCTGCCACGAAGCATTTCTG
AACCTTCCCAACGTCAAGCGTCTTAACTATTTGCAGTATCTTGAGAACTTTGATGACTTTACTCCCGGCCACGGC
GGCGTCAAGCGAGCTGAGAAACTTTCGGACCAATATCTCCAGTACGTCGGTCAGCTTTCCGAGTATCTGATCTCG
TTCCGGAAGCGCACCAAACCACTGGATGATACAGAAAAGGTCTTGAGGGAGTTTGACCAAGAGTTCGACAAGGCC
TGGGAAACCGATAGCGTCAAGGGATGGCAGTTGGACAAGCCGTCGGAGGCGACCAAGACGTCAGAGGAAACCATC
ATCTGGTGCGACGACTGCGAGAAGGAGTTCAGAAATCCAAATACCTACAGATGCCACTTGAGCGGCAAAAAGCAC
GTCAAGGCCGCGGAGAGGAGAAAGCAGCGCAAGGCGGACGGCGAGCAACGTACCCAGACACGCAAGATCGGCACC
GTCTCGACCACGCGCACCAAGGAGCGAGCCATTGCCGAGCGCGAGCATCGAGTGAAGCGGCTGGCCAGCTCTATG
AGCACCGAGCGCAGCGACACGCGCGTCAATGTGGAGCGCAGACAGGGCATGACAGAACGCGAGCGTCAGCAAGAG
CTCGAAAATCTCCTCAACGCGTCCGAGACGGCCAAGGGCAACGGCGAGGAAGCGGCCGAAGAGGGCGAGGATGGC
GAAGAAAAGATCTACAACCCTCTCAAGCTCCCGCTCGCGTGGGACGGAAAGCCGATTCCCTTTTGGCTATATCGA
CTGCACGGTCTGGGCGTTGAGTTCCACTGCGAAATCTGCGGCAATTTTGTGTACATGGGGCGCCGGGCCTTCGAC
AAGCACTTTGGTGAGCCGCGGCACATTTACGGTCTCAAGTGTCTGGGCATCACAAACGTTACCCTCTTCAGGGAC
ATTACCAAGATTGAGGAGGCCATGAAGCTGTGGGACCGACTGCAGAAGGAGCAGAAGAAGAACAAGGTGGATGAG
GGTAGCATCGTGCAGATGGAGGACGCCGAGGGCAACGTGATGCCGGAGAAGGTGTACATTGACCTGCAGAAGCAG
GGGCTGCTGTAA
Transcript >Ophcf2|05291
ATGCTCACAGTTCTCGAGGAGGAGAGATACATACACGAAGATCTCGAGCGCATCGAACAAGGCATAGCCGACCGC
ATGCGCGACGAGCCAAACCATATCCGAAATCGCCTCAACCGAGACCATGAAGTGGCTCAGCTACTCGAGCAGATG
CAGCAGCAGTCGACAAATCTCATCGCAATTCACGAGGACAAGACCCGCTCGGCGGCGCGCGAGCTCGAGCAATTA
AACACATCCGACCCTTTCGGCCTTTTCTACGCGAACCTCAACGAGCTCCGCGAGCATCACTCCAGATATCCCAAC
GAGCAGGCCGAAAACCCGGAGCTTCGATACAAGCCAAAGCCGGCGACCGATGCCGATGGACTCGTTCCAACCATC
GTCGACTCTCTCTTCTCCGGAGAGGAGGCTTACGGCCGTTTCTTCGATCTCAACACCTGCCACGAAGCATTTCTG
AACCTTCCCAACGTCAAGCGTCTTAACTATTTGCAGTATCTTGAGAACTTTGATGACTTTACTCCCGGCCACGGC
GGCGTCAAGCGAGCTGAGAAACTTTCGGACCAATATCTCCAGTACGTCGGTCAGCTTTCCGAGTATCTGATCTCG
TTCCGGAAGCGCACCAAACCACTGGATGATACAGAAAAGGTCTTGAGGGAGTTTGACCAAGAGTTCGACAAGGCC
TGGGAAACCGATAGCGTCAAGGGATGGCAGTTGGACAAGCCGTCGGAGGCGACCAAGACGTCAGAGGAAACCATC
ATCTGGTGCGACGACTGCGAGAAGGAGTTCAGAAATCCAAATACCTACAGATGCCACTTGAGCGGCAAAAAGCAC
GTCAAGGCCGCGGAGAGGAGAAAGCAGCGCAAGGCGGACGGCGAGCAACGTACCCAGACACGCAAGATCGGCACC
GTCTCGACCACGCGCACCAAGGAGCGAGCCATTGCCGAGCGCGAGCATCGAGTGAAGCGGCTGGCCAGCTCTATG
AGCACCGAGCGCAGCGACACGCGCGTCAATGTGGAGCGCAGACAGGGCATGACAGAACGCGAGCGTCAGCAAGAG
CTCGAAAATCTCCTCAACGCGTCCGAGACGGCCAAGGGCAACGGCGAGGAAGCGGCCGAAGAGGGCGAGGATGGC
GAAGAAAAGATCTACAACCCTCTCAAGCTCCCGCTCGCGTGGGACGGAAAGCCGATTCCCTTTTGGCTATATCGA
CTGCACGGTCTGGGCGTTGAGTTCCACTGCGAAATCTGCGGCAATTTTGTGTACATGGGGCGCCGGGCCTTCGAC
AAGCACTTTGGTGAGCCGCGGCACATTTACGGTCTCAAGTGTCTGGGCATCACAAACGTTACCCTCTTCAGGGAC
ATTACCAAGATTGAGGAGGCCATGAAGCTGTGGGACCGACTGCAGAAGGAGCAGAAGAAGAACAAGGTGGATGAG
GGTAGCATCGTGCAGATGGAGGACGCCGAGGGCAACGTGATGCCGGAGAAGGTGTACATTGACCTGCAGAAGCAG
GGGCTGCTGTAA
Gene >Ophcf2|05291
ATGCTCACAGTTCTCGAGGAGGAGAGATACATACACGAAGATCTCGAGCGCATCGAACAAGGCATAGCCGACCGC
ATGCGCGACGAGCCAAACCATGTGAGCATTGGCTGCCTTGAAAAGGATAGCCAAACTGATTTGCAGATCCGAAAT
CGCCTCAACCGAGACCATGAAGTGGCTCAGCTACTCGAGCAGATGCAGCAGCAGTCGACAAATCTCATCGCAATT
CACGAGGACAAGACCCGCTCGGCGGCGCGCGAGCTCGAGCAATTAAACACATCCGACCCTTTCGGCCTTTTCTAC
GCGAACCTCAACGAGCTCCGCGAGCATCACTCCAGATATCCCAACGAGCAGGCCGAAAACCCGGAGCTTCGATAC
AAGCCAAAGCCGGCGACCGATGCCGATGGACTCGTTCCAACCATCGTCGACTCTCTCTTCTCCGGAGAGGAGGCT
TACGGCCGTTTCTTCGATCTCAACACCTGCCACGAAGCATTTCTGAACCTTCCCAACGTCAAGCGTCTTAACTAT
TTGCAGTATCTTGAGAACTTTGATGACTTTACTCCCGGCCACGGCGGCGTCAAGCGAGCTGAGAAACTTTCGGAC
CAATATCTCCAGTACGTCGGTCAGCTTTCCGAGTATCTGATCTCGTTCCGGAAGCGCACCAAACCACTGGATGAT
ACAGAAAAGGTCTTGAGGGAGTTTGACCAAGAGTTCGACAAGGCCTGGGAAACCGATAGCGTCAAGGGATGGCAG
TTGGACAAGCCGTCGGAGGCGACCAAGACGTCAGAGGAAACCATCATCTGGTGCGACGACTGCGAGAAGGAGTTC
AGAAATCCAAATACCTACAGATGCCACTTGAGCGGCAAAAAGCACGTCAAGGCCGCGGAGAGGAGAAAGCAGCGC
AAGGCGGACGGCGAGCAACGTACCCAGACACGCAAGATCGGCACCGTCTCGACCACGCGCACCAAGGAGCGAGCC
ATTGCCGAGCGCGAGCATCGAGTGAAGCGGCTGGCCAGCTCTATGAGCACCGAGCGCAGCGACACGCGCGTCAAT
GTGGAGCGCAGACAGGGCATGACAGAACGCGAGCGTCAGCAAGAGCTCGAAAATCTCCTCAACGCGTCCGAGACG
GCCAAGGGCAACGGCGAGGAAGCGGCCGAAGAGGGCGAGGATGGCGAAGAAAAGATCTACAACCCTCTCAAGCTC
CCGCTCGCGTGGGACGGAAAGCCGATTCCCTTTTGGCTATATCGACTGCACGGTCTGGGCGTTGAGTTCCACTGC
GAAATCTGCGGCAATTTTGTGTACATGGGGCGCCGGGCCTTCGACAAGCACTTTGGTGAGCCGCGGCACATTTAC
GGTCTCAAGTGTCTGGGCATCACAAACGTTACCCTCTTCAGGGACATTACCAAGATTGAGGAGGCCATGAAGCTG
TGGGACCGACTGCAGAAGGAGCAGAAGAAGAACAAGGTGGATGAGGGTAGCATCGTGCAGATGGAGGACGCCGAG
GGCAACGTGATGCCGGAGAAGGTGTACATTGACCTGCAGAAGCAGGGGCTGCTGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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