Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05281
Gene name
Locationscaffold_05:3089696..3091458
Strand-
Gene length (bp)1762
Transcript length (bp)1236
Coding sequence length (bp)1236
Protein length (aa) 412

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00682 HMGL-like HMGL-like 9.7E-77 36 295

GO

GO Term Description Terminal node
GO:0003824 catalytic activity Yes
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 16 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 296.34 150.61 442.08
Alive In ants, during behavior modification 162.49 86.29 238.68
Dead In ants, recently dead 136.45 75.65 197.24

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.002625 yes
Alive Dead 0.330348 no
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05281
MCSEPASNGSVQPPRTAPRSNPYQSVGDFLSNTNRFQIIESTLREGEQFANAFFNTETKIKIATALSDFGVEYIE
LTSPAASEQSRLDCEAIAKLGLKAKILTHTRCTLEDAKLACDCGVHGVDVVIGTSSFLREHSHGKDMVAITKQAL
EVIEYIKSRGCEVRFSSEDSFRSDLVDLLQLYRAVDKAGVNRVGVADTVGCATPRQVYDLVRTLRGVVSTDIETH
FHNDTGCAIANAHAALEAGATHIDTSVLGIGERNGITPLGGLMARMIVGSRDYVTSRYKLHKLKEIEDLVAESVQ
VNIPFNSPITGTCAFTHKAGIHAKAILNEPSTYEIIDPADFGMSRYIHVTSRLTGWNAIRSRVEQLGLRMTDEQV
KLLTSKIKAMADIRPLAIDDTDSIIRSFHLELQEDK*
Coding >Ophcf2|05281
ATGTGCTCCGAACCAGCGTCAAACGGCTCCGTCCAGCCGCCTCGAACCGCTCCCCGGTCTAACCCGTATCAGTCT
GTTGGCGACTTTCTCTCCAACACCAACAGATTCCAGATCATCGAGAGCACGCTGCGAGAAGGCGAGCAGTTTGCC
AATGCCTTTTTCAACACTGAAACCAAGATCAAAATAGCCACGGCCCTATCCGACTTTGGCGTCGAATACATCGAA
CTCACGTCCCCTGCTGCGTCGGAGCAATCCCGTCTCGACTGCGAGGCCATCGCCAAGCTCGGTCTCAAGGCCAAG
ATCCTCACCCATACCCGATGCACGCTCGAAGACGCCAAGCTGGCCTGCGACTGTGGCGTCCACGGAGTCGATGTT
GTCATTGGGACCTCGAGCTTCCTCAGAGAACATTCTCACGGCAAGGACATGGTGGCCATTACCAAGCAGGCCCTC
GAGGTCATTGAGTACATCAAGAGCCGGGGCTGCGAAGTCCGCTTCTCGTCCGAAGACTCGTTCCGCTCCGATCTC
GTCGACCTGCTGCAACTGTACCGCGCCGTCGACAAGGCTGGCGTCAATCGCGTCGGTGTTGCGGACACGGTCGGA
TGTGCCACGCCTCGTCAGGTCTACGATCTCGTCAGGACACTTCGAGGCGTCGTCTCGACCGATATCGAGACTCAT
TTCCACAACGACACCGGATGTGCCATCGCCAACGCCCACGCTGCGCTGGAAGCCGGCGCGACTCATATTGACACG
TCGGTACTTGGCATAGGCGAGAGGAACGGCATCACGCCCTTGGGTGGTCTCATGGCCCGCATGATTGTCGGCAGT
CGTGACTACGTCACCTCGAGATATAAGCTTCACAAGCTCAAGGAGATTGAAGACCTAGTGGCCGAGTCGGTGCAG
GTCAACATTCCCTTCAACTCGCCCATTACCGGAACCTGTGCCTTTACCCACAAGGCCGGCATACACGCCAAGGCG
ATTCTTAACGAGCCGTCGACGTACGAAATCATCGATCCGGCGGATTTCGGCATGTCACGATACATCCACGTCACG
TCGAGGCTCACGGGCTGGAACGCCATCCGGAGCCGTGTGGAGCAGCTCGGTCTCCGCATGACGGATGAGCAGGTG
AAGCTGCTGACATCCAAGATCAAGGCCATGGCCGACATCCGGCCTTTGGCGATTGACGATACGGATTCCATCATT
CGGTCGTTCCATCTCGAGCTGCAGGAGGACAAGTAG
Transcript >Ophcf2|05281
ATGTGCTCCGAACCAGCGTCAAACGGCTCCGTCCAGCCGCCTCGAACCGCTCCCCGGTCTAACCCGTATCAGTCT
GTTGGCGACTTTCTCTCCAACACCAACAGATTCCAGATCATCGAGAGCACGCTGCGAGAAGGCGAGCAGTTTGCC
AATGCCTTTTTCAACACTGAAACCAAGATCAAAATAGCCACGGCCCTATCCGACTTTGGCGTCGAATACATCGAA
CTCACGTCCCCTGCTGCGTCGGAGCAATCCCGTCTCGACTGCGAGGCCATCGCCAAGCTCGGTCTCAAGGCCAAG
ATCCTCACCCATACCCGATGCACGCTCGAAGACGCCAAGCTGGCCTGCGACTGTGGCGTCCACGGAGTCGATGTT
GTCATTGGGACCTCGAGCTTCCTCAGAGAACATTCTCACGGCAAGGACATGGTGGCCATTACCAAGCAGGCCCTC
GAGGTCATTGAGTACATCAAGAGCCGGGGCTGCGAAGTCCGCTTCTCGTCCGAAGACTCGTTCCGCTCCGATCTC
GTCGACCTGCTGCAACTGTACCGCGCCGTCGACAAGGCTGGCGTCAATCGCGTCGGTGTTGCGGACACGGTCGGA
TGTGCCACGCCTCGTCAGGTCTACGATCTCGTCAGGACACTTCGAGGCGTCGTCTCGACCGATATCGAGACTCAT
TTCCACAACGACACCGGATGTGCCATCGCCAACGCCCACGCTGCGCTGGAAGCCGGCGCGACTCATATTGACACG
TCGGTACTTGGCATAGGCGAGAGGAACGGCATCACGCCCTTGGGTGGTCTCATGGCCCGCATGATTGTCGGCAGT
CGTGACTACGTCACCTCGAGATATAAGCTTCACAAGCTCAAGGAGATTGAAGACCTAGTGGCCGAGTCGGTGCAG
GTCAACATTCCCTTCAACTCGCCCATTACCGGAACCTGTGCCTTTACCCACAAGGCCGGCATACACGCCAAGGCG
ATTCTTAACGAGCCGTCGACGTACGAAATCATCGATCCGGCGGATTTCGGCATGTCACGATACATCCACGTCACG
TCGAGGCTCACGGGCTGGAACGCCATCCGGAGCCGTGTGGAGCAGCTCGGTCTCCGCATGACGGATGAGCAGGTG
AAGCTGCTGACATCCAAGATCAAGGCCATGGCCGACATCCGGCCTTTGGCGATTGACGATACGGATTCCATCATT
CGGTCGTTCCATCTCGAGCTGCAGGAGGACAAGTAG
Gene >Ophcf2|05281
ATGTGCTCCGAACCAGCGTCAAACGGCTCCGTCCAGCCGCCTCGAACCGCTCCCCGGTCTAACCCGTATCAGTCT
GTTGGCGACTTTCTCTCCAACACCAACAGATTCCAGATCATCGAGAGCACGCTGCGAGAAGGCGAGCAGTTTGCC
AATGCCTTTTTCAACACTGGTAAGAAAGCCTGAGATTTGGTTCCCTAATTGGTCTTTTTTTTTTTTTTCTAACGT
CTCGCTCGTCTTCTAGAAACCAAGATCAAAATGTGCCACATTCCCACATTTCCTTTCCCTTTCTTCGACGGCCTC
GACTAATCCGCCGCCCGCAGAGCCACGGCCCTATCCGACTTTGGCGTCGAATACATCGAACTCACGTCCCCTGCT
GCGTCGGAGCAATCCCGTCTCGACTGCGAGGCCATCGCCAAGCTCGGTCTCAAGGCCAAGATCCTCACCCATACC
CGATGCACGCTCGAAGACGCCAAGCTGGCCTGCGACTGTGGCGTCCACGGAGTCGATGTTGTCATTGGGACCTCG
AGGTGGGCTGCTTCCGCTGCATGGATGATGTAAAAGGCTGACTTGGCCCCAGCTTCCTCAGAGAACATTCTCACG
GCAAGGACATGGTGGCCATTACCAAGCAGGCCCTCGAGGTCATTGAGTACATCAAGAGGTAGGGCTTTCTCGCTT
CTCGTGCCGCTGGATCCTGACACATCGTCTAGCCGGGGCTGCGAAGTCCGCTTCTCGTCCGAAGACTCGTTCCGC
TCCGATCTCGTCGACCTGCTGCAACTGTACCGCGCCGTCGACAAGGCTGGCGTCAATCGCGTCGGTGTTGCGGAC
ACGGTCGGATGTGCCACGCCTCGTCAGGTCTACGATCTCGTCAGGACACTTCGAGGCGTCGTCTCGACCGATATC
GAGACTCATTTGTGAGAGCGAATTCCGTCTTCGTCTTGACGCCTCTAACGGGAGGCAGCCACAACGACACCGGAT
GTGCCATCGCCAACGCCCACGCTGCGCTGGAAGCCGGCGCGACTCATATTGACACGTCGGTACTTGGCATAGGTG
AGACGGTCTCTGTCCCCTTCTTCGCTCCAAGCTAATACTGTTCTAGGCGAGAGGAACGGCATCACGGTGAGCATG
ACGGGTATCGCGTACTGGCGCTTGTTCTGACTCATTCAGCCCTTGGGTGGTCTCATGGCCCGCATGATTGTCGGC
AGTCGTGACTACGTCACCTCGAGATATAAGCTTCACAAGCTCAAGGAGATTGAAGACCTAGTGGCCGAGTCGGTG
CAGGTCAACATTCCCTTCAACTCGCCCATTACCGGTGAGTCGGAAGCGGGCCGGTGGATTGAGTCTGTTGCCAAC
GCACGATAGGAACCTGTGCCTTTACCCACAAGGCCGGCATACACGCCAAGGCGATTCTTAACGAGGTAGGTATTC
GAGATGGGCTGATGCGACGGCTACTGACGACAAGCAGCCGTCGACGTACGAAATCATCGATCCGGCGGATTTCGG
CATGTCACGATACATCCACGTCACGTCGAGGCTCACGGGCTGGAACGCCATCCGGAGCCGTGTGGAGCAGCTCGG
TCTCCGCATGACGGATGAGCAGGTGAAGCTGCTGTGAGTAGTCTGTCGCTTACGGCCTGACGCGGACTGACGAAA
GTTGGGTAGGACATCCAAGATCAAGGCCATGGCCGACATCCGGCCTTTGGCGATTGACGATACGGATTCCATCAT
TCGGTCGTTCCATCTCGAGCTGCAGGAGGACAAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail