Protein ID | Ophcf2|05281 |
Gene name | |
Location | scaffold_05:3089696..3091458 |
Strand | - |
Gene length (bp) | 1762 |
Transcript length (bp) | 1236 |
Coding sequence length (bp) | 1236 |
Protein length (aa) | 412 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00682 | HMGL-like | HMGL-like | 9.7E-77 | 36 | 295 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003824 | catalytic activity | Yes |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 16 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Fungus | Fungus in pure culture | 296.34 | 150.61 | 442.08 |
Alive | In ants, during behavior modification | 162.49 | 86.29 | 238.68 |
Dead | In ants, recently dead | 136.45 | 75.65 | 197.24 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Alive | Fungus | 0.002625 | yes |
Alive | Dead | 0.330348 | no |
Dead | Fungus | 0.000238 | yes |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|05281 MCSEPASNGSVQPPRTAPRSNPYQSVGDFLSNTNRFQIIESTLREGEQFANAFFNTETKIKIATALSDFGVEYIE LTSPAASEQSRLDCEAIAKLGLKAKILTHTRCTLEDAKLACDCGVHGVDVVIGTSSFLREHSHGKDMVAITKQAL EVIEYIKSRGCEVRFSSEDSFRSDLVDLLQLYRAVDKAGVNRVGVADTVGCATPRQVYDLVRTLRGVVSTDIETH FHNDTGCAIANAHAALEAGATHIDTSVLGIGERNGITPLGGLMARMIVGSRDYVTSRYKLHKLKEIEDLVAESVQ VNIPFNSPITGTCAFTHKAGIHAKAILNEPSTYEIIDPADFGMSRYIHVTSRLTGWNAIRSRVEQLGLRMTDEQV KLLTSKIKAMADIRPLAIDDTDSIIRSFHLELQEDK* |
Coding | >Ophcf2|05281 ATGTGCTCCGAACCAGCGTCAAACGGCTCCGTCCAGCCGCCTCGAACCGCTCCCCGGTCTAACCCGTATCAGTCT GTTGGCGACTTTCTCTCCAACACCAACAGATTCCAGATCATCGAGAGCACGCTGCGAGAAGGCGAGCAGTTTGCC AATGCCTTTTTCAACACTGAAACCAAGATCAAAATAGCCACGGCCCTATCCGACTTTGGCGTCGAATACATCGAA CTCACGTCCCCTGCTGCGTCGGAGCAATCCCGTCTCGACTGCGAGGCCATCGCCAAGCTCGGTCTCAAGGCCAAG ATCCTCACCCATACCCGATGCACGCTCGAAGACGCCAAGCTGGCCTGCGACTGTGGCGTCCACGGAGTCGATGTT GTCATTGGGACCTCGAGCTTCCTCAGAGAACATTCTCACGGCAAGGACATGGTGGCCATTACCAAGCAGGCCCTC GAGGTCATTGAGTACATCAAGAGCCGGGGCTGCGAAGTCCGCTTCTCGTCCGAAGACTCGTTCCGCTCCGATCTC GTCGACCTGCTGCAACTGTACCGCGCCGTCGACAAGGCTGGCGTCAATCGCGTCGGTGTTGCGGACACGGTCGGA TGTGCCACGCCTCGTCAGGTCTACGATCTCGTCAGGACACTTCGAGGCGTCGTCTCGACCGATATCGAGACTCAT TTCCACAACGACACCGGATGTGCCATCGCCAACGCCCACGCTGCGCTGGAAGCCGGCGCGACTCATATTGACACG TCGGTACTTGGCATAGGCGAGAGGAACGGCATCACGCCCTTGGGTGGTCTCATGGCCCGCATGATTGTCGGCAGT CGTGACTACGTCACCTCGAGATATAAGCTTCACAAGCTCAAGGAGATTGAAGACCTAGTGGCCGAGTCGGTGCAG GTCAACATTCCCTTCAACTCGCCCATTACCGGAACCTGTGCCTTTACCCACAAGGCCGGCATACACGCCAAGGCG ATTCTTAACGAGCCGTCGACGTACGAAATCATCGATCCGGCGGATTTCGGCATGTCACGATACATCCACGTCACG TCGAGGCTCACGGGCTGGAACGCCATCCGGAGCCGTGTGGAGCAGCTCGGTCTCCGCATGACGGATGAGCAGGTG AAGCTGCTGACATCCAAGATCAAGGCCATGGCCGACATCCGGCCTTTGGCGATTGACGATACGGATTCCATCATT CGGTCGTTCCATCTCGAGCTGCAGGAGGACAAGTAG |
Transcript | >Ophcf2|05281 ATGTGCTCCGAACCAGCGTCAAACGGCTCCGTCCAGCCGCCTCGAACCGCTCCCCGGTCTAACCCGTATCAGTCT GTTGGCGACTTTCTCTCCAACACCAACAGATTCCAGATCATCGAGAGCACGCTGCGAGAAGGCGAGCAGTTTGCC AATGCCTTTTTCAACACTGAAACCAAGATCAAAATAGCCACGGCCCTATCCGACTTTGGCGTCGAATACATCGAA CTCACGTCCCCTGCTGCGTCGGAGCAATCCCGTCTCGACTGCGAGGCCATCGCCAAGCTCGGTCTCAAGGCCAAG ATCCTCACCCATACCCGATGCACGCTCGAAGACGCCAAGCTGGCCTGCGACTGTGGCGTCCACGGAGTCGATGTT GTCATTGGGACCTCGAGCTTCCTCAGAGAACATTCTCACGGCAAGGACATGGTGGCCATTACCAAGCAGGCCCTC GAGGTCATTGAGTACATCAAGAGCCGGGGCTGCGAAGTCCGCTTCTCGTCCGAAGACTCGTTCCGCTCCGATCTC GTCGACCTGCTGCAACTGTACCGCGCCGTCGACAAGGCTGGCGTCAATCGCGTCGGTGTTGCGGACACGGTCGGA TGTGCCACGCCTCGTCAGGTCTACGATCTCGTCAGGACACTTCGAGGCGTCGTCTCGACCGATATCGAGACTCAT TTCCACAACGACACCGGATGTGCCATCGCCAACGCCCACGCTGCGCTGGAAGCCGGCGCGACTCATATTGACACG TCGGTACTTGGCATAGGCGAGAGGAACGGCATCACGCCCTTGGGTGGTCTCATGGCCCGCATGATTGTCGGCAGT CGTGACTACGTCACCTCGAGATATAAGCTTCACAAGCTCAAGGAGATTGAAGACCTAGTGGCCGAGTCGGTGCAG GTCAACATTCCCTTCAACTCGCCCATTACCGGAACCTGTGCCTTTACCCACAAGGCCGGCATACACGCCAAGGCG ATTCTTAACGAGCCGTCGACGTACGAAATCATCGATCCGGCGGATTTCGGCATGTCACGATACATCCACGTCACG TCGAGGCTCACGGGCTGGAACGCCATCCGGAGCCGTGTGGAGCAGCTCGGTCTCCGCATGACGGATGAGCAGGTG AAGCTGCTGACATCCAAGATCAAGGCCATGGCCGACATCCGGCCTTTGGCGATTGACGATACGGATTCCATCATT CGGTCGTTCCATCTCGAGCTGCAGGAGGACAAGTAG |
Gene | >Ophcf2|05281 ATGTGCTCCGAACCAGCGTCAAACGGCTCCGTCCAGCCGCCTCGAACCGCTCCCCGGTCTAACCCGTATCAGTCT GTTGGCGACTTTCTCTCCAACACCAACAGATTCCAGATCATCGAGAGCACGCTGCGAGAAGGCGAGCAGTTTGCC AATGCCTTTTTCAACACTGGTAAGAAAGCCTGAGATTTGGTTCCCTAATTGGTCTTTTTTTTTTTTTTCTAACGT CTCGCTCGTCTTCTAGAAACCAAGATCAAAATGTGCCACATTCCCACATTTCCTTTCCCTTTCTTCGACGGCCTC GACTAATCCGCCGCCCGCAGAGCCACGGCCCTATCCGACTTTGGCGTCGAATACATCGAACTCACGTCCCCTGCT GCGTCGGAGCAATCCCGTCTCGACTGCGAGGCCATCGCCAAGCTCGGTCTCAAGGCCAAGATCCTCACCCATACC CGATGCACGCTCGAAGACGCCAAGCTGGCCTGCGACTGTGGCGTCCACGGAGTCGATGTTGTCATTGGGACCTCG AGGTGGGCTGCTTCCGCTGCATGGATGATGTAAAAGGCTGACTTGGCCCCAGCTTCCTCAGAGAACATTCTCACG GCAAGGACATGGTGGCCATTACCAAGCAGGCCCTCGAGGTCATTGAGTACATCAAGAGGTAGGGCTTTCTCGCTT CTCGTGCCGCTGGATCCTGACACATCGTCTAGCCGGGGCTGCGAAGTCCGCTTCTCGTCCGAAGACTCGTTCCGC TCCGATCTCGTCGACCTGCTGCAACTGTACCGCGCCGTCGACAAGGCTGGCGTCAATCGCGTCGGTGTTGCGGAC ACGGTCGGATGTGCCACGCCTCGTCAGGTCTACGATCTCGTCAGGACACTTCGAGGCGTCGTCTCGACCGATATC GAGACTCATTTGTGAGAGCGAATTCCGTCTTCGTCTTGACGCCTCTAACGGGAGGCAGCCACAACGACACCGGAT GTGCCATCGCCAACGCCCACGCTGCGCTGGAAGCCGGCGCGACTCATATTGACACGTCGGTACTTGGCATAGGTG AGACGGTCTCTGTCCCCTTCTTCGCTCCAAGCTAATACTGTTCTAGGCGAGAGGAACGGCATCACGGTGAGCATG ACGGGTATCGCGTACTGGCGCTTGTTCTGACTCATTCAGCCCTTGGGTGGTCTCATGGCCCGCATGATTGTCGGC AGTCGTGACTACGTCACCTCGAGATATAAGCTTCACAAGCTCAAGGAGATTGAAGACCTAGTGGCCGAGTCGGTG CAGGTCAACATTCCCTTCAACTCGCCCATTACCGGTGAGTCGGAAGCGGGCCGGTGGATTGAGTCTGTTGCCAAC GCACGATAGGAACCTGTGCCTTTACCCACAAGGCCGGCATACACGCCAAGGCGATTCTTAACGAGGTAGGTATTC GAGATGGGCTGATGCGACGGCTACTGACGACAAGCAGCCGTCGACGTACGAAATCATCGATCCGGCGGATTTCGG CATGTCACGATACATCCACGTCACGTCGAGGCTCACGGGCTGGAACGCCATCCGGAGCCGTGTGGAGCAGCTCGG TCTCCGCATGACGGATGAGCAGGTGAAGCTGCTGTGAGTAGTCTGTCGCTTACGGCCTGACGCGGACTGACGAAA GTTGGGTAGGACATCCAAGATCAAGGCCATGGCCGACATCCGGCCTTTGGCGATTGACGATACGGATTCCATCAT TCGGTCGTTCCATCTCGAGCTGCAGGAGGACAAGTAG |