© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05279 |
| Gene name | |
| Location | scaffold_05:3086684..3087768 |
| Strand | - |
| Gene length (bp) | 1084 |
| Transcript length (bp) | 846 |
| Coding sequence length (bp) | 846 |
| Protein length (aa) | 282 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00775 | Dioxygenase_C | Dioxygenase | 4.0E-45 | 100 | 279 |
| PF04444 | Dioxygenase_N | Catechol dioxygenase N terminus | 2.8E-23 | 24 | 89 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0018576 | catechol 1,2-dioxygenase activity | Yes |
| GO:0008199 | ferric iron binding | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0003824 | catalytic activity | Yes |
| GO:0006725 | cellular aromatic compound metabolic process | Yes |
| GO:0009712 | catechol-containing compound metabolic process | Yes |
| GO:0044237 | cellular metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0008152 | metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0051213 | dioxygenase activity | No |
| GO:0046872 | metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | No |
| GO:0018958 | phenol-containing compound metabolic process | No |
| GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | No |
| GO:1901615 | organic hydroxy compound metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0008150 | biological_process | No |
| GO:0019114 | catechol dioxygenase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05279 MSCTLLGADFTEGVANACGPGATPRVRTVVSSLVHHLHAFAREVNLSTEEMMHGLRLMNWAGRMSDDKRDESLLL VDVLGLETLVDDLTLGNASATATSILGPMWRADAPIRDNGTTIGFDLPPDAEVVFMHGTVTDAVSGEPLVDAEVD VWQASTNGLYEQQDPEQRDFNLRGRFRTDASGRYSFYCIRPTAYPIPSDGPAFQLLKLMDRSGYRPAHIHLKVTA KGRKPLVTQIFDVECEYLDKDVAFAVKDELKVRFVPREGDERAELELVYDIRLAGE* |
| Coding | >Ophcf2|05279 ATGTCTTGTACTCTCCTCGGCGCGGACTTTACGGAGGGGGTTGCTAACGCGTGCGGACCGGGAGCTACGCCTCGC GTTCGTACCGTCGTCTCGTCTCTTGTTCACCATCTACACGCCTTTGCGAGGGAAGTCAACCTCTCGACTGAGGAG ATGATGCACGGGTTACGATTGATGAACTGGGCGGGACGCATGAGCGATGATAAGCGTGATGAGAGCCTGCTCCTG GTCGACGTCCTCGGTCTCGAAACACTGGTAGATGACCTCACCCTCGGCAACGCCTCTGCCACAGCCACCTCCATC CTCGGTCCCATGTGGAGGGCCGATGCACCGATTCGAGATAACGGGACGACCATCGGCTTCGATCTCCCGCCGGAT GCCGAGGTGGTTTTCATGCACGGGACTGTTACGGATGCCGTGTCTGGCGAGCCGCTGGTTGATGCCGAGGTTGAT GTCTGGCAGGCTTCGACGAATGGACTCTATGAGCAGCAGGATCCGGAGCAGAGGGATTTTAATCTGAGAGGGAGG TTTAGGACGGATGCGAGCGGGAGATATTCTTTTTATTGTATTCGGCCGACGGCTTATCCTATTCCCTCTGACGGA CCGGCTTTTCAACTACTGAAGCTGATGGATCGCTCCGGCTACCGCCCAGCGCACATCCACCTCAAGGTCACTGCC AAGGGACGCAAGCCGCTCGTGACGCAAATCTTTGACGTGGAGTGCGAGTATCTGGACAAGGACGTGGCGTTTGCG GTCAAGGATGAGCTCAAGGTGCGGTTCGTGCCGAGGGAGGGTGATGAGAGGGCCGAGCTGGAGCTCGTGTACGAC ATTCGGCTGGCGGGAGAGTAG |
| Transcript | >Ophcf2|05279 ATGTCTTGTACTCTCCTCGGCGCGGACTTTACGGAGGGGGTTGCTAACGCGTGCGGACCGGGAGCTACGCCTCGC GTTCGTACCGTCGTCTCGTCTCTTGTTCACCATCTACACGCCTTTGCGAGGGAAGTCAACCTCTCGACTGAGGAG ATGATGCACGGGTTACGATTGATGAACTGGGCGGGACGCATGAGCGATGATAAGCGTGATGAGAGCCTGCTCCTG GTCGACGTCCTCGGTCTCGAAACACTGGTAGATGACCTCACCCTCGGCAACGCCTCTGCCACAGCCACCTCCATC CTCGGTCCCATGTGGAGGGCCGATGCACCGATTCGAGATAACGGGACGACCATCGGCTTCGATCTCCCGCCGGAT GCCGAGGTGGTTTTCATGCACGGGACTGTTACGGATGCCGTGTCTGGCGAGCCGCTGGTTGATGCCGAGGTTGAT GTCTGGCAGGCTTCGACGAATGGACTCTATGAGCAGCAGGATCCGGAGCAGAGGGATTTTAATCTGAGAGGGAGG TTTAGGACGGATGCGAGCGGGAGATATTCTTTTTATTGTATTCGGCCGACGGCTTATCCTATTCCCTCTGACGGA CCGGCTTTTCAACTACTGAAGCTGATGGATCGCTCCGGCTACCGCCCAGCGCACATCCACCTCAAGGTCACTGCC AAGGGACGCAAGCCGCTCGTGACGCAAATCTTTGACGTGGAGTGCGAGTATCTGGACAAGGACGTGGCGTTTGCG GTCAAGGATGAGCTCAAGGTGCGGTTCGTGCCGAGGGAGGGTGATGAGAGGGCCGAGCTGGAGCTCGTGTACGAC ATTCGGCTGGCGGGAGAGTAG |
| Gene | >Ophcf2|05279 ATGTCTTGTACTCTCCTCGGCGCGGACTTTACGGAGGGGGTTGCTAACGCGTGCGGACCGGGAGCTACGCCTCGC GTTCGTACCGTCGTCTCGTCTCTTGTTCACCATCTACACGCCTTTGCGAGGGAAGTCAACCTCTCGACTGAGGAG ATGATGCACGGGTTACGATTGATGAACTGGGCGGGACGCATGAGCGATGATAAGCGTGATGAGAGCCTGCTCCTG GTCGACGTCCTCGGTCTCGAAACGTGCGTCGATTTACATTCTTCATATCTCCGTGTGAGGAGAAAGAATGCAAGC TGAGATCTGAACAGACTGGTAGATGACCTCACCCTCGGCAACGCCTCTGCCACAGCCACCTCCATCCTCGGTCCC ATGTGGAGGGCCGATGCACCGATTCGAGATAACGGGACGACCATCGGCTTCGATCTCCCGCCGGATGCCGAGGTG GTTTTCATGCACGGGACTGTTACGGATGCCGTGTCTGGCGAGCCGCTGGTTGATGCCGAGGTTGATGTCTGGCAG GCTTCGACGAATGGTGAGTTTGTGAGGAGATTGGTTTGGGGTGGTATGAGTTTATTGGCTGACGGTCGTTAGGAC TCTATGAGCAGCAGGATCCGGAGCAGAGGGATTTTAATCTGAGAGGGAGGTTTAGGACGGATGCGAGCGGGAGAT ATTCTTTTTATTGTATTCGGCCGACGGCTTATCCTGTTGGTTCGCCCTTTATCCAAAGTTGATCTCTACTAACGG ACGTATAGATTCCCTCTGACGGACCGGCTTTTCAACTACTGAAGCTGATGGATCGCTCCGGCTACCGCCCAGCGC ACATCCACCTCAAGGTGAGAAGAGAAGATGCCAAAGGGGAGAAGAATAAAACGGGAGCACGGCTAAGCTACGCAT CTAGGTCACTGCCAAGGGACGCAAGCCGCTCGTGACGCAAATCTTTGACGTGGAGTGCGAGTATCTGGACAAGGA CGTGGCGTTTGCGGTCAAGGATGAGCTCAAGGTGCGGTTCGTGCCGAGGGAGGGTGATGAGAGGGCCGAGCTGGA GCTCGTGTACGACATTCGGCTGGCGGGAGAGTAG |