© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05278 |
| Gene name | |
| Location | scaffold_05:3085217..3086635 |
| Strand | + |
| Gene length (bp) | 1418 |
| Transcript length (bp) | 1356 |
| Coding sequence length (bp) | 1356 |
| Protein length (aa) | 452 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01494 | FAD_binding_3 | FAD binding domain | 2.5E-08 | 165 | 368 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 4.3E-07 | 16 | 59 |
| PF01266 | DAO | FAD dependent oxidoreductase | 1.7E-07 | 13 | 55 |
| PF00890 | FAD_binding_2 | FAD binding domain | 8.7E-05 | 13 | 47 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0071949 | FAD binding | Yes |
| GO:0000166 | nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0050660 | flavin adenine dinucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05278 MASTDLPGWHQLDMAVIGGGIGGMSAAIALRRAGHVVTIYEKSDFAGEVGASVSCAANGTRWLHEWAVDVRRGDP VVLRKLISRDWKTGEPISVYSLDDYEQRWGHVYNLFHRQDMHAMLREAALSDEGEGVPAVLVVNHKCTWIDIEAG LIGFDNGSSSRHDVIIGADGIGSATRSALGIRPEKRPSEQSCLHANVRTEDAVRAGLVDYSLDSALEYWGGQDGS WDKIVLSPCHGGRLLSYYCFFPRERGDYAAQAWAAEDRPVDELLGPYPELDGRVRAHLGIGYEIRPWRLWLHEPY PYLYRGNVCLLGDAGHPMMPHQSQGACLAIEDAAALGILFGRDCFAGDVDEALAVYQEVRLPRVTRVQAAAARAS YNINERIGFSANKELPTYKVEDASKILTIEEMNAYHLKMDIEERLAARRGVIFRGGFIHGLPIGLQLPNGRRIGS T* |
| Coding | >Ophcf2|05278 ATGGCTTCCACCGACCTCCCAGGCTGGCATCAGCTCGACATGGCCGTCATAGGCGGCGGCATCGGCGGAATGTCA GCGGCCATCGCCCTCCGTCGAGCCGGCCACGTGGTGACGATATACGAAAAGTCGGATTTCGCAGGCGAGGTCGGC GCATCGGTATCATGCGCGGCCAACGGAACGCGCTGGCTGCATGAATGGGCCGTCGATGTCCGCCGCGGAGACCCC GTCGTCCTCCGCAAGCTCATAAGCCGAGACTGGAAGACGGGAGAGCCCATCAGCGTATACAGCCTCGACGACTAT GAGCAGCGATGGGGTCACGTGTATAACCTCTTCCACCGACAGGATATGCACGCCATGCTACGAGAGGCGGCCTTG TCCGACGAGGGAGAAGGCGTCCCGGCTGTCCTAGTAGTGAACCACAAGTGTACATGGATCGATATCGAAGCCGGC CTCATCGGATTCGACAACGGCTCTTCCTCCCGGCATGACGTCATCATCGGCGCCGACGGCATCGGCTCCGCGACC CGCTCCGCTCTCGGCATCCGACCGGAGAAGCGACCATCGGAACAAAGCTGTCTCCACGCCAACGTCCGTACCGAA GACGCGGTACGAGCCGGACTGGTCGACTATTCCCTCGATAGCGCGCTGGAGTACTGGGGCGGACAGGACGGTAGC TGGGATAAGATTGTGCTATCACCCTGTCACGGGGGCCGTCTCCTCTCCTATTACTGCTTCTTCCCTCGCGAACGG GGAGATTACGCCGCTCAGGCATGGGCCGCCGAGGACCGGCCCGTGGACGAGCTGCTGGGGCCGTATCCGGAGCTT GACGGTCGGGTGAGGGCCCATCTGGGCATCGGGTACGAGATCCGACCGTGGAGACTATGGCTTCACGAGCCGTAC CCGTATCTATACCGCGGGAACGTCTGTCTTCTCGGTGACGCGGGACATCCGATGATGCCGCATCAGAGTCAGGGC GCGTGTCTGGCCATCGAGGACGCGGCCGCGTTGGGGATCCTGTTCGGGAGGGATTGCTTTGCTGGTGATGTCGAT GAGGCGCTGGCCGTCTATCAGGAGGTGAGGTTACCGCGCGTCACACGCGTTCAGGCTGCCGCGGCCAGGGCGTCG TACAACATCAACGAGAGGATCGGCTTCTCGGCCAACAAGGAGCTTCCGACGTACAAGGTCGAAGACGCCAGCAAG ATACTGACCATCGAAGAGATGAACGCCTACCATCTCAAGATGGACATCGAGGAGAGACTGGCGGCAAGACGAGGC GTCATCTTCCGAGGCGGCTTCATCCACGGCCTTCCCATCGGATTACAACTCCCCAACGGAAGACGGATAGGCAGC ACCTAA |
| Transcript | >Ophcf2|05278 ATGGCTTCCACCGACCTCCCAGGCTGGCATCAGCTCGACATGGCCGTCATAGGCGGCGGCATCGGCGGAATGTCA GCGGCCATCGCCCTCCGTCGAGCCGGCCACGTGGTGACGATATACGAAAAGTCGGATTTCGCAGGCGAGGTCGGC GCATCGGTATCATGCGCGGCCAACGGAACGCGCTGGCTGCATGAATGGGCCGTCGATGTCCGCCGCGGAGACCCC GTCGTCCTCCGCAAGCTCATAAGCCGAGACTGGAAGACGGGAGAGCCCATCAGCGTATACAGCCTCGACGACTAT GAGCAGCGATGGGGTCACGTGTATAACCTCTTCCACCGACAGGATATGCACGCCATGCTACGAGAGGCGGCCTTG TCCGACGAGGGAGAAGGCGTCCCGGCTGTCCTAGTAGTGAACCACAAGTGTACATGGATCGATATCGAAGCCGGC CTCATCGGATTCGACAACGGCTCTTCCTCCCGGCATGACGTCATCATCGGCGCCGACGGCATCGGCTCCGCGACC CGCTCCGCTCTCGGCATCCGACCGGAGAAGCGACCATCGGAACAAAGCTGTCTCCACGCCAACGTCCGTACCGAA GACGCGGTACGAGCCGGACTGGTCGACTATTCCCTCGATAGCGCGCTGGAGTACTGGGGCGGACAGGACGGTAGC TGGGATAAGATTGTGCTATCACCCTGTCACGGGGGCCGTCTCCTCTCCTATTACTGCTTCTTCCCTCGCGAACGG GGAGATTACGCCGCTCAGGCATGGGCCGCCGAGGACCGGCCCGTGGACGAGCTGCTGGGGCCGTATCCGGAGCTT GACGGTCGGGTGAGGGCCCATCTGGGCATCGGGTACGAGATCCGACCGTGGAGACTATGGCTTCACGAGCCGTAC CCGTATCTATACCGCGGGAACGTCTGTCTTCTCGGTGACGCGGGACATCCGATGATGCCGCATCAGAGTCAGGGC GCGTGTCTGGCCATCGAGGACGCGGCCGCGTTGGGGATCCTGTTCGGGAGGGATTGCTTTGCTGGTGATGTCGAT GAGGCGCTGGCCGTCTATCAGGAGGTGAGGTTACCGCGCGTCACACGCGTTCAGGCTGCCGCGGCCAGGGCGTCG TACAACATCAACGAGAGGATCGGCTTCTCGGCCAACAAGGAGCTTCCGACGTACAAGGTCGAAGACGCCAGCAAG ATACTGACCATCGAAGAGATGAACGCCTACCATCTCAAGATGGACATCGAGGAGAGACTGGCGGCAAGACGAGGC GTCATCTTCCGAGGCGGCTTCATCCACGGCCTTCCCATCGGATTACAACTCCCCAACGGAAGACGGATAGGCAGC ACCTAA |
| Gene | >Ophcf2|05278 ATGGCTTCCACCGACCTCCCAGGCTGGCATCAGCTCGACATGGCCGTCATAGGCGGCGGCATCGGCGGAATGTCA GCGGCCATCGCCCTCCGTCGAGCCGGCCACGTGGTGACGATATACGAAAAGTCGGATTTCGCAGGCGAGGTCGGC GCATCGGTATCATGCGCGGCCAACGGAACGCGCTGGCTGCATGAATGGGCCGTCGATGTCCGCCGCGGAGACCCC GTCGTCCTCCGCAAGCTCATAAGCCGAGACTGGAAGACGGGAGAGCCCATCAGCGTATACAGCCTCGACGACTAT GAGCAGCGATGGGGTCACGTGTATAACCTCTTCCACCGACAGGATATGCACGCCATGCTACGAGAGGCGGCCTTG TCCGACGAGGGAGAAGGCGTCCCGGCTGTCCTAGTAGTGAACCACAAGTGTACATGGATCGATATCGAAGCCGGC CTCATCGGATTCGACAACGGCTCTTCCTCCCGGCATGACGTCATCATCGGCGCCGACGGCATCGGCTCCGCGACC CGCTCCGCTCTCGGCATCCGACCGGAGAAGCGACCATCGGAACAAAGCTGTCTCCACGCCAACGTCCGTACCGAA GACGCGGTACGAGCCGGACTGGTCGACTATTCCCTCGATAGCGCGCTGGAGTACTGGGGCGGACAGGACGGTAGC TGGGATAAGATTGTGCTATCACCCTGTCACGGGGGCCGTCTCCTCTCCTATTACTGCTTCTTCCCTCGCGAACGG GGAGATTACGCCGCTCAGGCATGGGCCGCCGAGGACCGGCCCGTGGACGAGCTGCTGGGGCCGTATCCGGAGCTT GACGGTCGGGTGAGGGCCCATCTGGGCATCGGGTACGAGATCCGACCGTGGAGACTATGGCTTCACGAGCCGTAC CCGTATCTATACCGCGGGAACGTCTGTCTTCTCGGTGACGCGGGACATCCGATGATGCCGCATCAGAGTCAGGGC GCGTGTCTGGCCATCGAGGACGCGGCCGCGTTGGGGATCCTGTTCGGGAGGGATTGCTTTGCTGGTGATGTCGAT GAGGCGCTGGCCGTCTATCAGGAGGTGAGGTTACCGCGCGTCACACGCGTTCAGGCTGCCGCGGCCAGGGCGTCG TACAACATCAACGAGAGGATCGGCTTCTCGGCCAACAAGGAGCTTCCGACGTACAAGGTCGAAGACGCCAGCAAG ATACTGACCATCGAAGAGATGAACGCGCAAGTCTCTCTCTCTCTCTCGTCTTTTTACATCTGCCCGAGATGCTGA CCAGGATGACTAGCTACCATCTCAAGATGGACATCGAGGAGAGACTGGCGGCAAGACGAGGCGTCATCTTCCGAG GCGGCTTCATCCACGGCCTTCCCATCGGATTACAACTCCCCAACGGAAGACGGATAGGCAGCACCTAA |